TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Neuroticism
:
←
chr22:40,472,399-42,614,362
Best TWAS P=6.81e-10 · Best GWAS P=1.11e-10 conditioned to 0.0538
40.5M
41M
41.5M
42M
42.5M
0
2
4
6
8
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
GTEx
Esophagus Mucosa
RANGAP1
0.07
0.02
lasso
4
0.02
8.6e-03
6.2
-6.2
6.8e-10
-0.93
0.02
0.93
TRUE
5
The Cancer Genome Atlas
Thyroid Carcinoma
L3MBTL2
0.05
0.03
enet
9
0.04
1.8e-04
6.2
6.1
8.0e-10
0.89
0.01
0.98
FALSE
1
GTEx
Cells Transformed fibroblasts
SLC25A17
0.09
0.03
enet
10
0.06
4.2e-05
6.1
6.0
1.9e-09
0.84
0.02
0.98
FALSE
3
GTEx
Nerve Tibial
ACO2
0.06
0.05
lasso
5
0.04
8.5e-04
4.6
5.7
1.5e-08
0.80
0.58
0.34
FALSE
4
GTEx
Pituitary
L3MBTL2
0.19
0.15
enet
17
0.19
1.6e-05
-5.6
5.5
3.2e-08
0.68
0.18
0.57
FALSE