[Hub]/) : Traits : Verbal and Numeric Reasoning (VNR) : ← →

chr1:109,154,974-110,742,615

Best TWAS P=2.98e-08 · Best GWAS P=2.42e-08 conditioned to 0.204

Associated models

# Study Tissue Gene h2 eQTL R2 model # weights model R2 model R2 P eQTL GWAS Z TWAS Z TWAS P Top SNP corr PP3 PP4 joint
1 GTEx Brain Cerebellar Hemisphere SYPL2 0.28 0.04 lasso 5 0.09 2.7e-03 4.8 5.1 3.0e-07 0.87 0.07 0.86 FALSE
2 GTEx Muscle Skeletal CYB561D1 0.07 0.00 lasso 3 0.00 7.2e-01 5.2 -5.2 1.7e-07 -0.93 0.04 0.86 FALSE
3 GTEx Ovary SYPL2 0.39 0.44 lasso 5 0.46 8.8e-13 5.2 -5.2 2.4e-07 -0.90 0.06 0.94 FALSE
4 GTEx Ovary ATXN7L2 0.18 0.18 enet 17 0.13 5.6e-04 5.2 -5.2 2.1e-07 -0.92 0.05 0.89 FALSE
5 GTEx Testis SYPL2 0.45 0.50 enet 22 0.54 5.0e-28 5.1 -5.2 1.7e-07 -0.94 0.05 0.94 FALSE
6 GTEx Testis ATXN7L2 0.28 0.34 lasso 4 0.33 3.7e-15 5.1 -5.1 2.7e-07 -0.92 0.05 0.95 FALSE
7 NTR Blood SORT1 0.05 0.06 lasso 6 0.06 2.1e-17 5.2 5.5 3.0e-08 0.91 0.04 0.96 TRUE
8 The Cancer Genome Atlas Head and Neck Squamous Cell Carcinoma SYPL2 0.03 0.05 lasso 4 0.05 6.6e-06 5.1 5.2 2.4e-07 0.92 0.02 0.98 FALSE