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chr4:2,152,449-4,082,936

Best TWAS P=5.06e-17 · Best GWAS P=5.59e-19 conditioned to NaN

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	GTEx	Adipose Subcutaneous	GRK4	0.30	0.39	lasso	6	0.41	1.2e-35	-6.3	6.3	3.3e-10	-0.38	1.00	0.00	FALSE
2	GTEx	Adipose Visceral Omentum	GRK4	0.32	0.38	lasso	4	0.40	5.5e-22	-5.8	6.2	6.7e-10	-0.36	1.00	0.00	FALSE
3	GTEx	Adrenal Gland	NOP14	0.35	0.15	enet	33	0.19	1.9e-07	-5.6	5.9	3.5e-09	-0.42	0.92	0.02	FALSE
4	GTEx	Adrenal Gland	GRK4	0.38	0.25	lasso	5	0.29	5.1e-11	-6.3	6.0	2.4e-09	-0.38	0.99	0.01	FALSE
5	GTEx	Artery Aorta	GRK4	0.29	0.38	enet	11	0.40	1.3e-23	-6.3	6.3	3.0e-10	-0.37	1.00	0.00	FALSE
6	GTEx	Artery Coronary	GRK4	0.27	0.24	lasso	3	0.22	6.7e-08	-6.3	6.3	2.7e-10	-0.38	0.97	0.00	FALSE
7	GTEx	Artery Tibial	GRK4	0.34	0.35	lasso	4	0.35	1.1e-28	-6.3	6.4	1.2e-10	-0.39	1.00	0.00	FALSE
8	GTEx	Brain Cerebellum	GRK4	0.41	0.36	lasso	7	0.34	7.7e-11	-6.3	6.6	4.6e-11	-0.40	0.99	0.00	FALSE
9	GTEx	Brain Cortex	GRK4	0.25	0.26	lasso	4	0.25	1.7e-07	-6.3	6.5	7.6e-11	-0.39	0.96	0.00	FALSE
10	GTEx	Breast Mammary Tissue	GRK4	0.27	0.32	enet	11	0.32	5.3e-17	-6.3	6.3	3.4e-10	-0.38	1.00	0.00	FALSE
11	GTEx	Breast Mammary Tissue (Female)	GRK4	0.23	0.24	lasso	3	0.24	1.1e-07	-5.8	6.0	1.5e-09	-0.36	0.97	0.01	FALSE
12	GTEx	Cells Transformed fibroblasts	GRK4	0.32	0.35	lasso	7	0.37	3.1e-29	-5.8	6.2	7.5e-10	-0.37	1.00	0.00	FALSE
13	GTEx	Cells Transformed fibroblasts	HTT	0.09	0.00	enet	14	0.02	1.6e-02	-8.6	6.5	7.3e-11	-0.63	0.02	0.78	FALSE
14	GTEx	Colon Sigmoid	GRK4	0.26	0.30	lasso	2	0.28	2.6e-10	-6.3	6.3	2.1e-10	-0.38	0.99	0.00	FALSE
15	GTEx	Colon Transverse	GRK4	0.27	0.25	enet	18	0.25	2.4e-12	-5.8	6.0	2.5e-09	-0.38	1.00	0.00	FALSE
16	GTEx	Esophagus Gastroesophageal Junction	GRK4	0.37	0.23	lasso	9	0.22	2.2e-08	-5.8	5.8	4.8e-09	-0.35	0.98	0.00	FALSE
17	GTEx	Esophagus Mucosa	GRK4	0.28	0.35	lasso	4	0.34	3.1e-23	-6.3	6.3	2.7e-10	-0.37	1.00	0.00	FALSE
18	GTEx	Esophagus Muscularis	GRK4	0.29	0.30	enet	7	0.30	2.5e-18	-6.3	6.3	2.1e-10	-0.38	1.00	0.00	FALSE
19	GTEx	Lung	ADD1	0.09	0.02	enet	6	0.01	3.5e-02	5.2	6.5	1.0e-10	-0.51	0.52	0.06	FALSE
20	GTEx	Lung	GRK4	0.26	0.36	lasso	4	0.36	3.3e-29	-6.3	6.3	3.7e-10	-0.37	1.00	0.00	FALSE
21	GTEx	Lung	HTT	0.06	0.00	lasso	4	0.00	5.8e-01	-6.2	7.3	3.2e-13	-0.47	0.13	0.22	FALSE
22	GTEx	Muscle Skeletal	HTT	0.22	0.02	lasso	9	0.06	1.3e-06	-7.9	-5.9	3.9e-09	0.71	0.28	0.64	FALSE
23	GTEx	Nerve Tibial	GRK4	0.29	0.38	lasso	3	0.39	4.6e-29	-6.3	6.3	3.7e-10	-0.38	1.00	0.00	FALSE
24	GTEx	Ovary	GRK4	0.25	0.19	lasso	8	0.18	3.6e-05	-6.3	7.7	1.9e-14	-0.48	0.17	0.40	FALSE
25	GTEx	Pancreas	GRK4	0.14	0.05	lasso	9	0.03	3.0e-02	-6.3	6.4	1.6e-10	-0.39	0.46	0.12	FALSE
26	GTEx	Pituitary	GRK4	0.17	0.00	enet	6	-0.01	5.6e-01	-6.0	5.9	3.9e-09	-0.36	0.09	0.09	TRUE
27	GTEx	Skin Not Sun Exposed Suprapubic	GRK4	0.38	0.43	lasso	4	0.42	9.6e-25	-6.3	6.2	4.2e-10	-0.37	1.00	0.00	FALSE
28	GTEx	Skin Sun Exposed Lower leg	GRK4	0.37	0.45	enet	30	0.46	1.3e-41	-6.3	5.1	2.8e-07	-0.26	1.00	0.00	TRUE
29	GTEx	Spleen	GRK4	0.24	0.16	lasso	5	0.12	4.8e-04	-6.3	6.4	1.9e-10	-0.39	0.23	0.10	FALSE
30	GTEx	Stomach	GRK4	0.22	0.19	lasso	7	0.19	2.6e-09	-5.7	5.2	1.9e-07	-0.30	1.00	0.00	FALSE
31	GTEx	Testis	GRK4	0.36	0.18	enet	22	0.28	1.3e-12	-6.3	5.3	9.5e-08	-0.38	0.98	0.01	FALSE
32	GTEx	Thyroid	NOP14	0.09	0.04	lasso	5	0.03	4.5e-03	-5.5	5.7	1.4e-08	-0.32	0.76	0.04	TRUE
33	GTEx	Thyroid	MFSD10	0.15	0.11	lasso	8	0.13	3.6e-10	-5.0	5.4	7.6e-08	-0.20	1.00	0.00	FALSE
34	GTEx	Thyroid	GRK4	0.50	0.47	lasso	9	0.48	6.4e-41	-6.3	6.2	4.9e-10	-0.36	1.00	0.00	FALSE
35	GTEx	Thyroid	NOP14-AS1	0.18	0.09	lasso	8	0.11	1.3e-08	-5.8	6.4	1.4e-10	-0.42	1.00	0.00	FALSE
36	GTEx	Uterus	GRK4	0.31	0.24	enet	29	0.32	2.5e-07	-5.7	6.4	1.6e-10	-0.42	0.34	0.13	TRUE
37	GTEx	Vagina	GRK4	0.27	0.12	lasso	4	0.11	1.6e-03	-6.1	5.8	5.9e-09	-0.32	0.14	0.25	FALSE
38	GTEx	Whole Blood	GRK4	0.08	0.10	lasso	4	0.10	1.0e-09	-6.3	6.1	9.8e-10	-0.36	1.00	0.00	FALSE
39	GTEx	Whole Blood	HTT	0.10	0.00	enet	15	0.03	1.4e-03	3.6	5.5	3.3e-08	-0.48	0.09	0.48	FALSE
40	METSIM	Adipose	GRK4	0.20	0.26	lasso	6	0.25	9.9e-38	-6.3	6.3	2.6e-10	-0.38	1.00	0.00	FALSE
41	METSIM	Adipose	RGS12	0.05	0.00	blup	408	0.00	5.6e-02	2.2	-7.2	4.5e-13	0.69	0.43	0.38	FALSE
42	ROSMAP	Brain Pre-frontal Cortex	GRK4	0.12	0.14	lasso	4	0.14	1.8e-17	-6.3	6.3	3.0e-10	-0.39	1.00	0.00	FALSE
43	The Cancer Genome Atlas	Bladder Urothelial Carcinoma	GRK4	0.09	0.10	lasso	4	0.14	1.4e-11	-6.3	6.2	4.5e-10	-0.37	1.00	0.00	FALSE
44	The Cancer Genome Atlas	Breast Invasive Carcinoma	GRK4	0.11	0.17	lasso	7	0.18	6.7e-36	-6.3	6.2	5.1e-10	-0.37	1.00	0.00	FALSE
45	The Cancer Genome Atlas	Cervical Squamous Cell Carcinoma	GRK4	0.09	0.12	blup	76	0.12	1.7e-06	-6.3	6.4	1.8e-10	-0.38	0.92	0.03	FALSE
46	The Cancer Genome Atlas	Colon Adenocarcinoma	GRK4	0.18	0.23	blup	76	0.21	3.8e-12	-6.4	5.8	6.0e-09	-0.28	1.00	0.00	FALSE
47	The Cancer Genome Atlas	Colon Adenocarcinoma	RGS12	0.21	0.24	enet	9	0.27	8.9e-16	-6.7	-6.5	1.0e-10	0.52	0.02	0.98	FALSE
48	The Cancer Genome Atlas	Head and Neck Squamous Cell Carcinoma	GRK4	0.19	0.23	blup	77	0.22	4.2e-24	-6.3	5.8	7.9e-09	-0.37	1.00	0.00	FALSE
49	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	C4orf44	0.03	0.02	blup	42	0.02	8.0e-04	-8.6	8.4	6.5e-17	-0.81	0.00	0.98	FALSE
50	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	GRK4	0.09	0.18	lasso	5	0.20	1.5e-22	-6.0	6.7	2.5e-11	-0.44	1.00	0.00	FALSE
51	The Cancer Genome Atlas	Kidney Renal Papillary Cell Carcinoma	GRK4	0.16	0.18	lasso	6	0.20	1.9e-11	-5.5	6.4	1.2e-10	-0.37	0.99	0.01	FALSE
52	The Cancer Genome Atlas	Lung Adenocarcinoma	C4orf44	0.03	0.04	lasso	4	0.05	2.9e-06	-8.5	8.4	5.1e-17	-0.81	0.01	0.99	TRUE
53	The Cancer Genome Atlas	Lung Adenocarcinoma	GRK4	0.13	0.19	lasso	2	0.19	6.1e-22	-6.3	5.9	3.7e-09	-0.39	1.00	0.00	FALSE
54	The Cancer Genome Atlas	Lung Squamous Cell Carcinoma	C4orf44	0.03	0.04	lasso	1	0.03	1.0e-04	-6.2	6.2	4.5e-10	-0.62	0.20	0.76	FALSE
55	The Cancer Genome Atlas	Lung Squamous Cell Carcinoma	GRK4	0.10	0.14	enet	16	0.14	4.6e-15	-6.4	6.3	2.6e-10	-0.38	1.00	0.00	FALSE
56	The Cancer Genome Atlas	Ovarian Serous Cystadenocarcinoma	GRK4	0.13	0.10	blup	76	0.11	8.4e-08	-5.8	6.8	1.1e-11	-0.45	0.26	0.74	FALSE
57	The Cancer Genome Atlas	Pancreatic Adenocarcinoma	GRK4	0.23	0.32	lasso	5	0.31	1.0e-13	-6.3	6.4	1.8e-10	-0.38	1.00	0.00	FALSE
58	The Cancer Genome Atlas	Prostate Adenocarcinoma	GRK4	0.12	0.13	lasso	6	0.14	6.0e-15	-6.3	6.0	2.7e-09	-0.36	1.00	0.00	FALSE
59	The Cancer Genome Atlas	Rectum Adenocarcinoma	GRK4	0.27	0.10	blup	76	0.13	7.3e-04	-6.4	6.0	1.6e-09	-0.38	0.16	0.06	FALSE
60	The Cancer Genome Atlas	Rectum Adenocarcinoma	RGS12	0.58	0.10	enet	25	0.24	2.4e-06	-5.8	-5.8	8.4e-09	0.50	0.01	0.89	FALSE
61	The Cancer Genome Atlas	Soft Tissue Sarcoma	GRK4	0.08	0.07	blup	77	0.09	4.4e-06	-5.6	7.3	3.8e-13	-0.52	0.65	0.33	FALSE
62	The Cancer Genome Atlas	Stomach Adenocarcinoma	GRK4	0.17	0.24	lasso	6	0.24	1.2e-17	-6.4	6.6	3.1e-11	-0.41	1.00	0.00	FALSE
63	The Cancer Genome Atlas	Testicular Germ Cell Tumors	GRK4	0.08	0.09	lasso	1	0.06	4.2e-03	-6.3	6.3	2.8e-10	-0.38	0.09	0.21	FALSE
64	The Cancer Genome Atlas	Thyroid Carcinoma	C4orf10	0.18	0.06	lasso	3	0.07	2.2e-07	-5.7	5.8	6.4e-09	-0.45	0.09	0.90	FALSE
65	The Cancer Genome Atlas	Thyroid Carcinoma	C4orf44	0.15	0.20	lasso	4	0.20	2.9e-19	-6.2	7.1	1.6e-12	-0.69	0.91	0.09	FALSE
66	The Cancer Genome Atlas	Thyroid Carcinoma	GRK4	0.22	0.39	lasso	6	0.38	4.1e-39	-6.4	6.5	1.0e-10	-0.39	1.00	0.00	FALSE
67	The Cancer Genome Atlas	Thyroid Carcinoma	NOP14	0.09	0.12	blup	57	0.13	1.4e-12	-5.3	6.2	6.5e-10	-0.42	0.04	0.96	FALSE
68	The Cancer Genome Atlas	Uterine Corpus Endometrial Carcinoma	GRK4	0.11	0.12	lasso	1	0.10	8.4e-04	-5.8	5.8	7.2e-09	-0.36	0.13	0.29	FALSE