Best TWAS P=1.6e-13 · Best GWAS P=1.48e-12 conditioned to 0.0554
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | CHADL | 0.08 | 0.06 | lasso | 8 | 0.05 | 2.8e-07 | -6.6 | 6.2 | 6.2e-10 | -0.23 | 0.07 | 0.93 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | EP300 | 0.05 | 0.00 | bslmm | 289 | 0.02 | 3.2e-03 | 5.1 | -7.4 | 1.6e-13 | 0.36 | 0.16 | 0.66 | TRUE |
3 | GTEx | Artery Tibial | L3MBTL2 | 0.05 | 0.06 | lasso | 3 | 0.05 | 1.0e-04 | 5.1 | -5.4 | 6.9e-08 | 0.20 | 0.42 | 0.15 | FALSE |
4 | GTEx | Brain Cortex | RP4-756G23.5 | 0.10 | 0.12 | lasso | 7 | 0.08 | 2.8e-03 | -6.6 | 6.6 | 4.6e-11 | -0.26 | 0.06 | 0.74 | FALSE |
5 | GTEx | Brain Frontal Cortex BA9 | SLC25A17 | 0.11 | -0.01 | lasso | 5 | 0.00 | 3.5e-01 | -3.5 | -6.3 | 3.1e-10 | 0.66 | 0.06 | 0.40 | FALSE |
6 | GTEx | Cells EBV-transformed lymphocytes | RP4-756G23.5 | 0.12 | 0.10 | enet | 11 | 0.09 | 5.3e-04 | -6.6 | 6.7 | 1.8e-11 | -0.26 | 0.06 | 0.82 | FALSE |
7 | GTEx | Cells Transformed fibroblasts | RP4-756G23.5 | 0.07 | 0.06 | enet | 8 | 0.03 | 2.7e-03 | -6.6 | 6.4 | 1.7e-10 | -0.22 | 0.07 | 0.92 | FALSE |
8 | GTEx | Colon Sigmoid | RRP7A | 0.34 | 0.04 | enet | 26 | 0.13 | 1.9e-05 | 4.2 | 5.2 | 1.6e-07 | -0.01 | 0.04 | 0.16 | TRUE |
9 | GTEx | Esophagus Gastroesophageal Junction | RP4-756G23.5 | 0.12 | 0.10 | lasso | 4 | 0.08 | 7.7e-04 | -6.8 | 7.2 | 7.9e-13 | -0.26 | 0.02 | 0.96 | FALSE |
10 | GTEx | Esophagus Mucosa | RP4-756G23.5 | 0.10 | 0.09 | lasso | 5 | 0.09 | 1.9e-06 | -6.6 | 6.5 | 1.1e-10 | -0.23 | 0.06 | 0.94 | FALSE |
11 | GTEx | Heart Left Ventricle | RP4-756G23.5 | 0.09 | 0.08 | lasso | 6 | 0.07 | 9.5e-05 | -6.6 | 6.6 | 5.5e-11 | -0.26 | 0.07 | 0.92 | FALSE |
12 | GTEx | Liver | L3MBTL2 | 0.13 | 0.08 | lasso | 7 | 0.09 | 1.3e-03 | -6.6 | 6.3 | 2.5e-10 | -0.20 | 0.06 | 0.61 | FALSE |
13 | GTEx | Pituitary | L3MBTL2 | 0.19 | 0.15 | enet | 17 | 0.19 | 1.6e-05 | -6.8 | 6.3 | 2.7e-10 | -0.22 | 0.02 | 0.94 | FALSE |
14 | GTEx | Skin Not Sun Exposed Suprapubic | L3MBTL2 | 0.08 | 0.00 | lasso | 4 | 0.02 | 2.2e-02 | -6.6 | 5.8 | 8.3e-09 | -0.39 | 0.05 | 0.54 | FALSE |
15 | GTEx | Skin Sun Exposed Lower leg | L3MBTL2 | 0.08 | 0.03 | enet | 16 | 0.06 | 2.1e-05 | -6.5 | 7.3 | 3.9e-13 | -0.35 | 0.02 | 0.97 | FALSE |
16 | GTEx | Skin Sun Exposed Lower leg | RP4-756G23.5 | 0.05 | 0.07 | lasso | 6 | 0.05 | 6.9e-05 | -6.6 | 6.6 | 5.5e-11 | -0.26 | 0.07 | 0.92 | FALSE |
17 | GTEx | Thyroid | ZC3H7B | 0.11 | 0.07 | enet | 7 | 0.07 | 3.9e-06 | 5.5 | 5.7 | 1.1e-08 | -0.18 | 0.26 | 0.43 | FALSE |
18 | The Cancer Genome Atlas | Breast Invasive Carcinoma | EP300 | 0.01 | 0.00 | blup | 51 | 0.01 | 1.8e-02 | -6.6 | -6.8 | 1.0e-11 | 0.27 | 0.01 | 0.82 | FALSE |
19 | The Cancer Genome Atlas | Colon Adenocarcinoma | MKL1 | 0.05 | 0.03 | blup | 105 | 0.04 | 3.9e-03 | -6.5 | -5.6 | 2.3e-08 | 0.51 | 0.04 | 0.26 | TRUE |
20 | The Cancer Genome Atlas | Lung Adenocarcinoma | ADSL | 0.03 | 0.00 | blup | 33 | 0.01 | 8.9e-03 | -3.9 | -5.2 | 2.6e-07 | 0.52 | 0.00 | 0.05 | FALSE |
21 | The Cancer Genome Atlas | Stomach Adenocarcinoma | MKL1 | 0.05 | 0.01 | blup | 95 | 0.02 | 2.2e-02 | 3.6 | -5.9 | 2.8e-09 | 0.64 | 0.11 | 0.25 | FALSE |