Best TWAS P=9.67e-14 · Best GWAS P=1.78e-12 conditioned to 0.623
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ADCY3 | 0.16 | 0.12 | lasso | 10 | 0.14 | 3.2e-17 | 6.8 | -6.7 | 2.4e-11 | -0.83 | 0.03 | 0.97 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | CENPO | 0.07 | 0.03 | bslmm | 322 | 0.03 | 7.0e-05 | 3.7 | -6.6 | 3.2e-11 | -0.51 | 0.50 | 0.22 | FALSE |
3 | GTEx | Adipose Subcutaneous | ADCY3 | 0.07 | 0.04 | lasso | 6 | 0.01 | 3.2e-02 | 6.7 | 6.0 | 2.7e-09 | 0.95 | 0.02 | 0.98 | FALSE |
4 | GTEx | Artery Tibial | ADCY3 | 0.21 | 0.14 | lasso | 6 | 0.15 | 4.3e-12 | 6.3 | 6.6 | 4.5e-11 | 0.78 | 0.31 | 0.69 | FALSE |
5 | GTEx | Artery Tibial | RP11-443B20.1 | 0.17 | 0.08 | enet | 40 | 0.09 | 8.2e-08 | 6.3 | 5.9 | 3.6e-09 | 0.61 | 0.07 | 0.92 | FALSE |
6 | GTEx | Cells EBV-transformed lymphocytes | ADCY3 | 0.25 | 0.23 | enet | 10 | 0.12 | 9.2e-05 | 6.7 | -5.7 | 9.7e-09 | -0.87 | 0.05 | 0.94 | FALSE |
7 | GTEx | Cells EBV-transformed lymphocytes | RP11-443B20.1 | 0.13 | 0.13 | enet | 9 | 0.05 | 9.2e-03 | 6.7 | -6.7 | 2.8e-11 | -0.94 | 0.04 | 0.90 | FALSE |
8 | GTEx | Lung | NCOA1 | 0.12 | 0.04 | lasso | 7 | 0.06 | 1.9e-05 | 3.2 | 5.4 | 7.8e-08 | 0.27 | 0.52 | 0.02 | FALSE |
9 | GTEx | Nerve Tibial | ADCY3 | 0.09 | 0.05 | enet | 6 | 0.03 | 2.2e-03 | 6.3 | -7.5 | 9.7e-14 | -0.92 | 0.02 | 0.98 | TRUE |
10 | GTEx | Nerve Tibial | RP11-443B20.1 | 0.07 | 0.03 | enet | 6 | 0.02 | 1.1e-02 | 6.3 | -7.0 | 2.5e-12 | -0.86 | 0.03 | 0.96 | FALSE |
11 | GTEx | Whole Blood | DNAJC27 | 0.08 | 0.10 | lasso | 1 | 0.10 | 2.2e-09 | 6.5 | 6.5 | 7.3e-11 | 0.91 | 0.04 | 0.96 | FALSE |
12 | GTEx | Whole Blood | ADCY3 | 0.23 | 0.24 | enet | 24 | 0.27 | 5.5e-25 | 6.9 | 7.2 | 5.1e-13 | 0.96 | 0.02 | 0.98 | FALSE |
13 | GTEx | Whole Blood | RP11-443B20.1 | 0.21 | 0.17 | enet | 32 | 0.20 | 1.8e-18 | 6.5 | 7.3 | 3.9e-13 | 0.94 | 0.02 | 0.98 | FALSE |
14 | ROSMAP | Brain Pre-frontal Cortex | ADCY3 | 0.17 | 0.26 | enet | 32 | 0.26 | 6.8e-33 | 6.9 | -7.0 | 1.9e-12 | -0.95 | 0.02 | 0.98 | FALSE |
15 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ADCY3 | 0.03 | 0.02 | blup | 81 | 0.02 | 7.1e-04 | 4.6 | -5.8 | 8.9e-09 | -0.92 | 0.03 | 0.94 | FALSE |