Best TWAS P=5.39e-13 · Best GWAS P=1.68e-26 conditioned to 3.34e-07
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | GOSR1 | 0.16 | 0.14 | blup | 315 | 0.14 | 1.2e-16 | -5.24 | -5.5 | 3.2e-08 | -0.31 | 1.00 | 0.00 | FALSE |
2 | GTEx | Artery Aorta | CRLF3 | 0.12 | 0.03 | enet | 33 | 0.06 | 3.8e-04 | -0.33 | 6.0 | 2.7e-09 | 0.53 | 0.25 | 0.70 | FALSE |
3 | GTEx | Artery Tibial | GOSR1 | 0.09 | 0.08 | enet | 15 | 0.05 | 6.9e-05 | -5.43 | -5.2 | 2.1e-07 | -0.36 | 0.92 | 0.01 | FALSE |
4 | GTEx | Artery Tibial | RP11-848P1.7 | 0.54 | 0.00 | lasso | 10 | 0.02 | 7.3e-03 | 3.41 | 6.3 | 3.0e-10 | 0.47 | 0.02 | 0.06 | FALSE |
5 | GTEx | Brain Cerebellum | CRLF3 | 0.52 | 0.12 | lasso | 27 | 0.20 | 1.3e-06 | 9.64 | 7.2 | 5.4e-13 | 0.56 | 0.09 | 0.74 | TRUE |
6 | GTEx | Brain Cortex | GOSR1 | 0.20 | 0.20 | enet | 7 | 0.18 | 1.4e-05 | -5.24 | -5.8 | 7.1e-09 | -0.34 | 0.83 | 0.03 | FALSE |
7 | GTEx | Cells EBV-transformed lymphocytes | EVI2A | 0.13 | 0.03 | lasso | 4 | 0.01 | 1.5e-01 | -4.56 | 5.3 | 1.0e-07 | 0.17 | 0.16 | 0.04 | FALSE |
8 | GTEx | Esophagus Muscularis | SSH2 | 0.04 | 0.01 | enet | 10 | 0.00 | 3.3e-01 | 3.55 | 5.3 | 1.1e-07 | 0.18 | 0.51 | 0.06 | TRUE |
9 | GTEx | Esophagus Muscularis | CRLF3 | 0.17 | 0.12 | lasso | 6 | 0.18 | 5.1e-11 | -0.86 | 5.5 | 4.8e-08 | 0.46 | 0.94 | 0.05 | FALSE |
10 | GTEx | Nerve Tibial | GOSR1 | 0.13 | 0.11 | lasso | 3 | 0.11 | 5.7e-08 | -5.43 | -5.4 | 6.1e-08 | -0.35 | 0.99 | 0.00 | FALSE |
11 | GTEx | Spleen | EVI2A | 0.22 | 0.12 | lasso | 4 | 0.07 | 8.3e-03 | -5.70 | 5.2 | 1.5e-07 | 0.17 | 0.11 | 0.05 | FALSE |
12 | GTEx | Spleen | OMG | 0.41 | 0.10 | enet | 26 | 0.08 | 4.5e-03 | -4.66 | -5.8 | 8.0e-09 | -0.23 | 0.64 | 0.03 | FALSE |
13 | GTEx | Whole Blood | EVI2A | 0.07 | 0.04 | lasso | 4 | 0.04 | 2.6e-04 | -5.44 | 5.2 | 1.6e-07 | 0.14 | 0.89 | 0.00 | FALSE |
14 | METSIM | Adipose | NF1 | 0.04 | 0.00 | blup | 396 | 0.01 | 5.5e-03 | -6.23 | -5.7 | 1.5e-08 | -0.30 | 0.80 | 0.02 | FALSE |
15 | METSIM | Adipose | TEFM | 0.08 | 0.06 | blup | 246 | 0.06 | 8.8e-10 | 10.65 | 5.9 | 3.9e-09 | 0.57 | 0.00 | 1.00 | FALSE |
16 | YFS | Blood | EVI2A | 0.03 | 0.05 | lasso | 4 | 0.04 | 1.0e-13 | -5.70 | 5.7 | 1.2e-08 | 0.10 | 1.00 | 0.00 | FALSE |
17 | YFS | Blood | NUFIP2 | 0.07 | 0.05 | lasso | 12 | 0.06 | 5.8e-19 | -5.28 | 6.8 | 7.2e-12 | 0.13 | 0.01 | 0.99 | TRUE |
18 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | EVI2A | 0.03 | 0.03 | blup | 37 | 0.03 | 2.3e-03 | -5.45 | 5.6 | 2.6e-08 | 0.10 | 0.02 | 0.79 | FALSE |
19 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | OMG | 0.02 | 0.02 | blup | 31 | 0.02 | 3.2e-03 | -5.39 | 5.4 | 8.1e-08 | 0.15 | 0.02 | 0.86 | FALSE |
20 | The Cancer Genome Atlas | Breast Invasive Carcinoma | EVI2A | 0.03 | 0.03 | blup | 38 | 0.03 | 6.9e-07 | -5.46 | 5.2 | 2.1e-07 | 0.12 | 0.02 | 0.98 | FALSE |
21 | The Cancer Genome Atlas | Colon Adenocarcinoma | LRRC37B2 | 0.09 | 0.00 | enet | 11 | 0.03 | 7.3e-03 | -4.82 | 6.9 | 5.8e-12 | 0.47 | 0.01 | 0.08 | FALSE |
22 | The Cancer Genome Atlas | Esophageal Carcinoma | OMG | 0.09 | 0.09 | blup | 31 | 0.11 | 2.0e-04 | -4.51 | 5.2 | 2.1e-07 | 0.18 | 0.03 | 0.88 | FALSE |
23 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | EVI2A | 0.04 | 0.00 | blup | 37 | 0.01 | 1.1e-02 | -5.35 | 5.1 | 3.1e-07 | 0.00 | 0.01 | 0.52 | FALSE |
24 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | GOSR1 | 0.06 | 0.11 | enet | 7 | 0.10 | 6.8e-12 | -5.43 | -5.5 | 3.8e-08 | -0.34 | 0.01 | 0.99 | FALSE |
25 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | OMG | 0.02 | 0.02 | blup | 31 | 0.03 | 6.9e-04 | -4.57 | 5.2 | 1.6e-07 | 0.17 | 0.02 | 0.89 | FALSE |
26 | The Cancer Genome Atlas | Brain Lower Grade Glioma | EVI2A | 0.03 | 0.03 | blup | 38 | 0.04 | 3.0e-05 | -5.49 | 5.4 | 7.5e-08 | 0.16 | 0.04 | 0.96 | FALSE |
27 | The Cancer Genome Atlas | Lung Adenocarcinoma | EVI2A | 0.04 | 0.06 | blup | 38 | 0.06 | 3.0e-07 | -5.53 | 5.5 | 4.3e-08 | 0.15 | 0.05 | 0.95 | FALSE |
28 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | EVI2A | 0.03 | 0.03 | lasso | 1 | 0.02 | 2.4e-03 | -5.55 | 5.5 | 2.9e-08 | 0.10 | 0.02 | 0.69 | FALSE |
29 | The Cancer Genome Atlas | Prostate Adenocarcinoma | EVI2A | 0.08 | 0.12 | lasso | 3 | 0.12 | 1.3e-12 | -6.23 | 6.0 | 2.3e-09 | 0.12 | 0.01 | 0.99 | TRUE |
30 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GOSR1 | 0.02 | 0.00 | blup | 56 | 0.01 | 4.8e-02 | -5.43 | -5.3 | 1.2e-07 | -0.34 | 0.01 | 0.74 | FALSE |
31 | The Cancer Genome Atlas | Stomach Adenocarcinoma | EVI2A | 0.05 | 0.03 | enet | 7 | 0.04 | 4.8e-04 | -3.90 | 5.2 | 1.7e-07 | 0.13 | 0.04 | 0.64 | FALSE |
32 | The Cancer Genome Atlas | Thyroid Carcinoma | GOSR1 | 0.07 | 0.08 | lasso | 3 | 0.07 | 2.1e-07 | -5.30 | -5.3 | 1.1e-07 | -0.33 | 0.01 | 0.99 | FALSE |
33 | The Cancer Genome Atlas | Thyroid Carcinoma | OMG | 0.02 | 0.01 | blup | 32 | 0.02 | 4.8e-03 | -4.66 | 5.3 | 9.7e-08 | 0.18 | 0.02 | 0.84 | FALSE |