Best TWAS P=3.58e-25 · Best GWAS P=1.8e-26 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | DCXR | 0.14 | 0.07 | enet | 17 | 0.10 | 3.4e-12 | 8.6 | 9.8 | 9.1e-23 | 0.79 | 0.06 | 0.94 | TRUE |
2 | CommonMind | Brain Pre-frontal Cortex | MYADML2 | 0.52 | 0.43 | enet | 15 | 0.45 | 3.6e-60 | -6.4 | -6.9 | 5.5e-12 | -0.27 | 1.00 | 0.00 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | RAC3 | 0.09 | 0.05 | enet | 10 | 0.07 | 2.2e-08 | 9.8 | 9.1 | 1.1e-19 | 0.79 | 0.00 | 1.00 | FALSE |
4 | GTEx | Adrenal Gland | DCXR | 0.38 | 0.18 | lasso | 4 | 0.20 | 1.2e-07 | 9.4 | 9.7 | 2.8e-22 | 0.80 | 0.09 | 0.90 | TRUE |
5 | GTEx | Artery Aorta | DCXR | 0.34 | 0.17 | enet | 25 | 0.21 | 1.4e-11 | 9.4 | 9.3 | 9.9e-21 | 0.70 | 0.75 | 0.25 | FALSE |
6 | GTEx | Artery Tibial | STRA13 | 0.37 | 0.22 | enet | 14 | 0.22 | 1.6e-17 | 3.1 | -5.4 | 8.3e-08 | -0.53 | 1.00 | 0.00 | TRUE |
7 | GTEx | Artery Tibial | DCXR | 0.28 | 0.21 | lasso | 5 | 0.21 | 3.1e-16 | 9.4 | 10.3 | 1.2e-24 | 0.89 | 0.58 | 0.42 | FALSE |
8 | GTEx | Brain Cerebellum | DCXR | 0.20 | 0.23 | lasso | 3 | 0.22 | 4.5e-07 | 9.4 | 9.4 | 6.3e-21 | 0.77 | 0.07 | 0.80 | FALSE |
9 | GTEx | Breast Mammary Tissue (Female) | CCDC57 | 0.10 | 0.00 | enet | 12 | 0.01 | 1.7e-01 | 3.1 | 5.8 | 5.2e-09 | 0.46 | 0.03 | 0.22 | TRUE |
10 | GTEx | Cells EBV-transformed lymphocytes | DCXR | 0.29 | 0.24 | lasso | 2 | 0.20 | 3.8e-07 | 8.6 | 9.0 | 2.5e-19 | 0.75 | 0.33 | 0.60 | FALSE |
11 | GTEx | Esophagus Muscularis | DCXR | 0.18 | 0.08 | lasso | 5 | 0.05 | 9.2e-04 | 9.4 | 10.2 | 3.0e-24 | 0.86 | 0.02 | 0.98 | FALSE |
12 | GTEx | Nerve Tibial | DCXR | 0.19 | 0.06 | enet | 20 | 0.10 | 1.4e-07 | 8.6 | 8.7 | 2.2e-18 | 0.75 | 0.01 | 0.98 | FALSE |
13 | GTEx | Skin Not Sun Exposed Suprapubic | DCXR | 0.12 | 0.00 | enet | 13 | 0.00 | 2.3e-01 | 9.4 | 7.7 | 1.4e-14 | 0.65 | 0.02 | 0.74 | FALSE |
14 | GTEx | Skin Sun Exposed Lower leg | DCXR | 0.08 | 0.11 | lasso | 7 | 0.09 | 4.6e-08 | 9.4 | 9.6 | 1.2e-21 | 0.80 | 0.15 | 0.85 | TRUE |
15 | GTEx | Thyroid | ASPSCR1 | 0.23 | 0.15 | enet | 19 | 0.09 | 1.2e-07 | -6.9 | 7.8 | 7.8e-15 | 0.35 | 1.00 | 0.00 | TRUE |
16 | GTEx | Thyroid | DCXR | 0.35 | 0.20 | lasso | 5 | 0.30 | 5.1e-23 | 9.4 | 9.0 | 2.3e-19 | 0.77 | 0.68 | 0.32 | FALSE |
17 | NTR | Blood | ACTG1 | 0.04 | 0.00 | blup | 260 | 0.02 | 4.2e-06 | 4.0 | -5.2 | 2.0e-07 | 0.05 | 0.00 | 0.08 | TRUE |
18 | YFS | Blood | ASPSCR1 | 0.11 | 0.07 | lasso | 9 | 0.06 | 7.9e-20 | -6.6 | 7.3 | 3.2e-13 | 0.27 | 1.00 | 0.00 | FALSE |
19 | YFS | Blood | LRRC45 | 0.01 | 0.00 | lasso | 1 | 0.00 | 1.3e-02 | 9.4 | 9.4 | 5.1e-21 | 0.79 | 0.01 | 0.81 | FALSE |
20 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | PYCR1 | 0.02 | 0.01 | blup | 9 | 0.01 | 1.1e-02 | -6.4 | 7.3 | 3.3e-13 | 0.27 | 0.01 | 0.40 | TRUE |
21 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | DCXR | 0.04 | 0.04 | lasso | 4 | 0.02 | 1.6e-03 | 7.8 | 7.9 | 2.1e-15 | 0.61 | 0.20 | 0.27 | FALSE |
22 | The Cancer Genome Atlas | Brain Lower Grade Glioma | GPS1 | 0.04 | 0.02 | blup | 43 | 0.01 | 1.5e-02 | 2.8 | -5.2 | 2.5e-07 | -0.47 | 0.15 | 0.07 | FALSE |
23 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MYADML2 | 0.03 | 0.03 | blup | 10 | 0.03 | 1.1e-04 | -6.7 | -7.1 | 9.1e-13 | -0.28 | 0.01 | 0.96 | FALSE |
24 | The Cancer Genome Atlas | Brain Lower Grade Glioma | NOTUM | 0.06 | 0.02 | enet | 2 | 0.02 | 4.7e-03 | -6.2 | -6.9 | 4.3e-12 | -0.27 | 0.02 | 0.26 | FALSE |
25 | The Cancer Genome Atlas | Lung Adenocarcinoma | NPB | 0.03 | 0.01 | enet | 3 | 0.01 | 1.1e-02 | -6.9 | 6.6 | 3.9e-11 | 0.27 | 0.00 | 0.91 | FALSE |
26 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | METRNL | 0.05 | 0.02 | blup | 27 | 0.03 | 4.6e-03 | -2.3 | -5.3 | 9.2e-08 | -0.03 | 0.00 | 0.09 | TRUE |
27 | The Cancer Genome Atlas | Thyroid Carcinoma | DCXR | 0.09 | 0.03 | blup | 38 | 0.09 | 9.5e-09 | 9.4 | 10.4 | 3.6e-25 | 0.83 | 0.01 | 0.99 | TRUE |