Best TWAS P=3.1e-12 · Best GWAS P=4.73e-12 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Brain Cerebellum | RBMS2 | 0.25 | 0.05 | lasso | 5 | 0.14 | 4.6e-05 | 6.4 | 6.6 | 3.4e-11 | 0.65 | 0.04 | 0.41 | FALSE |
2 | GTEx | Brain Cerebellum | IL23A | 0.21 | 0.02 | lasso | 4 | 0.06 | 6.3e-03 | 6.4 | -6.1 | 1.3e-09 | -0.61 | 0.04 | 0.24 | FALSE |
3 | GTEx | Colon Sigmoid | HSD17B6 | 0.11 | 0.08 | enet | 12 | 0.08 | 6.9e-04 | 6.7 | 7.0 | 3.3e-12 | 0.90 | 0.02 | 0.89 | FALSE |
4 | GTEx | Esophagus Gastroesophageal Junction | WIBG | 0.16 | 0.02 | lasso | 5 | 0.04 | 1.9e-02 | -3.7 | -5.6 | 1.8e-08 | 0.01 | 0.02 | 0.69 | FALSE |
5 | GTEx | Muscle Skeletal | RAB5B | 0.29 | 0.32 | lasso | 4 | 0.33 | 1.3e-33 | 5.2 | -5.4 | 6.0e-08 | 0.02 | 0.10 | 0.89 | FALSE |
6 | GTEx | Muscle Skeletal | AC034102.1 | 0.28 | 0.31 | lasso | 4 | 0.31 | 2.3e-31 | 5.3 | -5.4 | 5.9e-08 | 0.02 | 0.10 | 0.90 | FALSE |
7 | GTEx | Testis | BAZ2A | 0.42 | 0.45 | lasso | 4 | 0.44 | 1.9e-21 | 6.2 | 6.2 | 5.9e-10 | 0.81 | 0.57 | 0.43 | FALSE |
8 | METSIM | Adipose | NACA | 0.05 | 0.05 | lasso | 6 | 0.04 | 3.1e-07 | 6.9 | 7.0 | 3.1e-12 | 0.97 | 0.01 | 0.99 | TRUE |
9 | NTR | Blood | NACA | 0.01 | 0.01 | lasso | 2 | 0.01 | 2.4e-03 | 5.7 | -5.9 | 3.4e-09 | -0.83 | 0.06 | 0.88 | FALSE |
10 | NTR | Blood | NACA2 | 0.02 | 0.02 | blup | 328 | 0.02 | 8.9e-08 | 5.7 | -6.3 | 3.9e-10 | -0.76 | 0.31 | 0.69 | FALSE |
11 | NTR | Blood | PRIM1 | 0.09 | 0.11 | lasso | 9 | 0.11 | 8.4e-34 | 5.7 | 5.9 | 3.7e-09 | 0.78 | 0.87 | 0.13 | FALSE |
12 | YFS | Blood | BAZ2A | 0.04 | 0.04 | lasso | 4 | 0.04 | 1.8e-13 | 6.1 | 6.3 | 2.5e-10 | 0.93 | 0.07 | 0.93 | FALSE |
13 | YFS | Blood | RBMS2 | 0.47 | 0.26 | enet | 59 | 0.48 | 2.0e-183 | 6.1 | 5.3 | 1.4e-07 | 0.62 | 0.54 | 0.46 | FALSE |
14 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | RAB5B | 0.07 | 0.00 | blup | 33 | 0.03 | 7.0e-03 | -3.9 | 5.8 | 8.0e-09 | 0.01 | 0.01 | 0.34 | FALSE |
15 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ERBB3 | 0.07 | 0.02 | blup | 29 | 0.05 | 2.1e-06 | 5.9 | 5.8 | 9.2e-09 | 0.02 | 0.00 | 1.00 | FALSE |
16 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | RAB5B | 0.05 | 0.02 | blup | 33 | 0.03 | 5.2e-03 | -3.7 | 5.4 | 6.8e-08 | 0.01 | 0.01 | 0.34 | FALSE |
17 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | ESYT1 | 0.16 | 0.02 | blup | 33 | 0.05 | 5.5e-03 | -2.8 | 5.9 | 4.1e-09 | -0.04 | 0.01 | 0.67 | TRUE |
18 | The Cancer Genome Atlas | Prostate Adenocarcinoma | NACA | 0.02 | 0.02 | blup | 26 | 0.02 | 1.8e-03 | 6.9 | 6.7 | 1.7e-11 | 0.92 | 0.01 | 0.88 | FALSE |
19 | The Cancer Genome Atlas | Soft Tissue Sarcoma | BAZ2A | 0.04 | 0.05 | blup | 42 | 0.04 | 2.9e-03 | 5.6 | -5.8 | 5.4e-09 | -0.80 | 0.02 | 0.54 | FALSE |
20 | The Cancer Genome Atlas | Thyroid Carcinoma | RAB5B | 0.11 | 0.03 | blup | 33 | 0.08 | 7.0e-08 | -3.7 | 5.9 | 4.5e-09 | -0.01 | 0.34 | 0.55 | FALSE |