Best TWAS P=2.56e-21 · Best GWAS P=3.38e-34 conditioned to 2.68e-23
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | ADCY4 | 0.08 | 0.04 | lasso | 3 | 0.03 | 3.3e-03 | -5.0 | -6.1 | 9.6e-10 | 0.00 | 0.16 | 0.40 | FALSE |
2 | GTEx | Brain Hippocampus | ADCY4 | 0.35 | 0.03 | lasso | 10 | 0.07 | 1.1e-02 | -8.4 | -7.4 | 1.6e-13 | 0.08 | 0.04 | 0.58 | FALSE |
3 | GTEx | Breast Mammary Tissue | LTB4R | 0.30 | 0.18 | lasso | 4 | 0.16 | 2.3e-08 | -5.2 | 5.2 | 1.8e-07 | 0.00 | 0.87 | 0.11 | FALSE |
4 | GTEx | Colon Transverse | ADCY4 | 0.26 | -0.01 | lasso | 4 | 0.00 | 3.6e-01 | -7.4 | -5.4 | 5.7e-08 | 0.08 | 0.06 | 0.14 | FALSE |
5 | GTEx | Esophagus Mucosa | TGM1 | 0.14 | 0.03 | enet | 21 | 0.03 | 5.1e-03 | -5.0 | 6.2 | 5.7e-10 | -0.01 | 0.10 | 0.82 | FALSE |
6 | GTEx | Esophagus Mucosa | TSSK4 | 0.10 | 0.00 | enet | 31 | 0.00 | 1.8e-01 | -8.7 | 5.7 | 1.4e-08 | 0.00 | 0.01 | 0.93 | FALSE |
7 | GTEx | Heart Atrial Appendage | ADCY4 | 0.28 | 0.14 | lasso | 4 | 0.10 | 2.1e-05 | -7.4 | -7.2 | 4.3e-13 | 0.03 | 0.17 | 0.61 | FALSE |
8 | GTEx | Lung | LTB4R | 0.19 | 0.15 | lasso | 6 | 0.12 | 2.0e-09 | -5.0 | 6.3 | 3.5e-10 | 0.00 | 0.98 | 0.02 | FALSE |
9 | GTEx | Thyroid | ADCY4 | 0.13 | 0.13 | lasso | 6 | 0.09 | 1.0e-07 | -8.4 | -9.1 | 6.5e-20 | 0.04 | 0.03 | 0.97 | FALSE |
10 | METSIM | Adipose | ADCY4 | 0.07 | 0.03 | lasso | 5 | 0.03 | 2.2e-05 | -8.4 | -9.5 | 2.6e-21 | 0.04 | 0.01 | 0.99 | TRUE |
11 | METSIM | Adipose | LTB4R | 0.15 | 0.07 | blup | 498 | 0.07 | 6.2e-11 | -5.2 | 5.8 | 6.1e-09 | 0.03 | 0.93 | 0.07 | FALSE |
12 | METSIM | Adipose | RABGGTA | 0.10 | 0.06 | lasso | 9 | 0.08 | 5.5e-12 | -6.7 | -5.9 | 3.0e-09 | -0.02 | 0.99 | 0.01 | FALSE |
13 | YFS | Blood | ADCY4 | 0.02 | 0.00 | bslmm | 493 | 0.01 | 1.3e-04 | -1.6 | -5.3 | 1.1e-07 | -0.04 | 0.09 | 0.08 | FALSE |
14 | YFS | Blood | LTB4R | 0.02 | 0.00 | blup | 483 | 0.01 | 6.1e-03 | -6.7 | 8.2 | 1.6e-16 | -0.01 | 0.03 | 0.95 | FALSE |
15 | YFS | Blood | MRPL52 | 0.44 | 0.22 | enet | 27 | 0.28 | 2.2e-93 | -8.0 | 6.8 | 7.4e-12 | -0.72 | 1.00 | 0.00 | TRUE |
16 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | ADCY4 | 0.03 | 0.01 | blup | 75 | 0.03 | 1.1e-03 | -4.5 | -7.7 | 1.3e-14 | 0.02 | 0.04 | 0.78 | FALSE |
17 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ADCY4 | 0.04 | 0.02 | blup | 75 | 0.04 | 3.8e-09 | -5.1 | -7.2 | 4.2e-13 | 0.05 | 0.07 | 0.93 | FALSE |
18 | The Cancer Genome Atlas | Colon Adenocarcinoma | ADCY4 | 0.07 | 0.02 | lasso | 4 | 0.03 | 4.7e-03 | -5.4 | -7.4 | 1.6e-13 | 0.03 | 0.02 | 0.84 | FALSE |
19 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ADCY4 | 0.03 | 0.03 | enet | 5 | 0.03 | 6.9e-04 | -7.7 | -6.8 | 8.6e-12 | -0.01 | 0.18 | 0.51 | FALSE |
20 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ADCY4 | 0.13 | 0.06 | enet | 20 | 0.09 | 2.8e-10 | -5.1 | -5.7 | 1.2e-08 | 0.06 | 0.38 | 0.62 | FALSE |
21 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ADCY4 | 0.06 | 0.06 | lasso | 6 | 0.09 | 3.0e-10 | -8.7 | -9.5 | 3.2e-21 | 0.04 | 0.00 | 1.00 | FALSE |
22 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MRPL52 | 0.04 | 0.00 | blup | 62 | 0.01 | 7.3e-03 | -8.0 | 5.9 | 3.2e-09 | -0.47 | 0.02 | 0.39 | FALSE |
23 | The Cancer Genome Atlas | Brain Lower Grade Glioma | SLC7A7 | 0.17 | 0.05 | enet | 18 | 0.10 | 6.2e-12 | -1.7 | 5.5 | 5.0e-08 | -0.37 | 0.67 | 0.27 | FALSE |
24 | The Cancer Genome Atlas | Lung Adenocarcinoma | ADCY4 | 0.07 | 0.09 | lasso | 3 | 0.08 | 4.4e-10 | -5.2 | -7.3 | 2.1e-13 | 0.02 | 0.12 | 0.88 | FALSE |
25 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | ADCY4 | 0.05 | 0.05 | lasso | 6 | 0.08 | 3.7e-09 | -4.4 | -5.8 | 5.3e-09 | -0.02 | 0.13 | 0.87 | FALSE |
26 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | NYNRIN | 0.05 | 0.02 | blup | 81 | 0.02 | 4.0e-03 | -8.0 | -6.5 | 6.4e-11 | 0.02 | 0.02 | 0.85 | FALSE |
27 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | ADCY4 | 0.15 | 0.13 | lasso | 6 | 0.12 | 1.2e-05 | -5.1 | -5.2 | 1.9e-07 | 0.03 | 0.10 | 0.34 | FALSE |
28 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | LTB4R | 0.16 | 0.05 | blup | 73 | 0.08 | 4.9e-04 | -4.3 | 6.6 | 3.9e-11 | -0.02 | 0.03 | 0.57 | FALSE |
29 | The Cancer Genome Atlas | Prostate Adenocarcinoma | LTB4R2 | 0.04 | 0.00 | blup | 76 | 0.02 | 2.9e-03 | -8.5 | 6.7 | 1.6e-11 | -0.03 | 0.02 | 0.60 | FALSE |
30 | The Cancer Genome Atlas | Stomach Adenocarcinoma | LTB4R | 0.04 | 0.01 | blup | 73 | 0.01 | 4.2e-02 | -8.5 | 7.8 | 6.8e-15 | -0.03 | 0.01 | 0.68 | FALSE |
31 | The Cancer Genome Atlas | Stomach Adenocarcinoma | LTB4R2 | 0.04 | 0.04 | lasso | 1 | 0.02 | 2.5e-02 | -8.5 | 8.5 | 2.2e-17 | -0.05 | 0.00 | 0.94 | FALSE |
32 | The Cancer Genome Atlas | Thyroid Carcinoma | ADCY4 | 0.12 | 0.10 | blup | 75 | 0.12 | 3.6e-12 | 4.3 | -5.9 | 3.5e-09 | 0.00 | 0.88 | 0.12 | FALSE |
33 | The Cancer Genome Atlas | Thyroid Carcinoma | NFATC4 | 0.04 | 0.02 | blup | 66 | 0.02 | 1.1e-02 | -5.1 | 7.5 | 9.5e-14 | -0.06 | 0.02 | 0.72 | FALSE |