Best TWAS P=1.3e-19 · Best GWAS P=2.21e-21 conditioned to 0.000901
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | CCBL2 | 0.58 | 0.68 | lasso | 7 | 0.69 | 1.4e-117 | 5.1 | -6.1 | 1.2e-09 | -0.64 | 1.00 | 0.00 | FALSE |
2 | GTEx | Adipose Subcutaneous | CCBL2 | 0.26 | 0.21 | enet | 15 | 0.23 | 1.2e-18 | 5.1 | -5.7 | 9.6e-09 | -0.61 | 1.00 | 0.00 | FALSE |
3 | GTEx | Adipose Visceral Omentum | PKN2 | 0.09 | 0.04 | enet | 8 | 0.05 | 1.2e-03 | 8.4 | 7.6 | 3.0e-14 | 0.67 | 0.30 | 0.39 | FALSE |
4 | GTEx | Adipose Visceral Omentum | CCBL2 | 0.21 | 0.10 | enet | 7 | 0.15 | 5.2e-08 | 5.0 | -5.8 | 5.0e-09 | -0.65 | 0.84 | 0.14 | FALSE |
5 | GTEx | Artery Aorta | CCBL2 | 0.29 | 0.20 | enet | 24 | 0.24 | 1.5e-13 | 5.0 | -5.3 | 1.5e-07 | -0.58 | 0.99 | 0.01 | FALSE |
6 | GTEx | Artery Coronary | CCBL2 | 0.29 | 0.19 | enet | 5 | 0.14 | 1.6e-05 | 5.4 | -5.3 | 1.0e-07 | -0.60 | 0.75 | 0.05 | FALSE |
7 | GTEx | Artery Tibial | CCBL2 | 0.30 | 0.24 | lasso | 8 | 0.29 | 4.9e-23 | 5.1 | -6.1 | 1.1e-09 | -0.66 | 1.00 | 0.00 | FALSE |
8 | GTEx | Brain Cerebellar Hemisphere | CCBL2 | 0.31 | 0.18 | lasso | 5 | 0.23 | 1.7e-06 | 8.4 | -8.4 | 3.1e-17 | -0.85 | 0.05 | 0.94 | FALSE |
9 | GTEx | Brain Cortex | CCBL2 | 0.59 | 0.39 | enet | 13 | 0.37 | 3.0e-11 | 8.4 | -6.3 | 2.2e-10 | -0.67 | 0.90 | 0.10 | FALSE |
10 | GTEx | Brain Frontal Cortex BA9 | CCBL2 | 0.47 | 0.38 | enet | 25 | 0.48 | 1.5e-14 | 5.0 | -6.1 | 1.1e-09 | -0.64 | 0.86 | 0.14 | FALSE |
11 | GTEx | Brain Hippocampus | CCBL2 | 0.39 | 0.27 | lasso | 5 | 0.13 | 5.1e-04 | 5.1 | 5.3 | 1.3e-07 | 0.53 | 0.21 | 0.29 | FALSE |
12 | GTEx | Brain Hypothalamus | CCBL2 | 0.34 | 0.00 | enet | 34 | 0.13 | 6.4e-04 | 5.1 | -5.3 | 9.9e-08 | -0.43 | 0.21 | 0.28 | FALSE |
13 | GTEx | Brain Nucleus accumbens basal ganglia | CCBL2 | 0.38 | 0.44 | enet | 20 | 0.32 | 2.1e-09 | 5.5 | -6.1 | 1.1e-09 | -0.68 | 0.77 | 0.23 | FALSE |
14 | GTEx | Cells Transformed fibroblasts | CCBL2 | 0.65 | 0.61 | enet | 32 | 0.67 | 6.1e-67 | 5.1 | -5.7 | 1.5e-08 | -0.62 | 1.00 | 0.00 | FALSE |
15 | GTEx | Colon Sigmoid | CCBL2 | 0.22 | 0.12 | enet | 4 | 0.09 | 5.2e-04 | 5.1 | -5.2 | 1.5e-07 | -0.56 | 0.32 | 0.40 | FALSE |
16 | GTEx | Colon Transverse | CCBL2 | 0.30 | 0.19 | lasso | 8 | 0.26 | 1.2e-12 | 5.1 | -6.9 | 5.0e-12 | -0.69 | 0.98 | 0.02 | FALSE |
17 | GTEx | Esophagus Muscularis | CCBL2 | 0.25 | 0.29 | enet | 18 | 0.28 | 1.6e-17 | 5.1 | -6.3 | 2.9e-10 | -0.65 | 1.00 | 0.00 | FALSE |
18 | GTEx | Heart Atrial Appendage | CCBL2 | 0.30 | 0.20 | enet | 11 | 0.15 | 3.4e-07 | 5.1 | -5.6 | 1.9e-08 | -0.60 | 0.98 | 0.01 | FALSE |
19 | GTEx | Muscle Skeletal | CCBL2 | 0.12 | 0.15 | enet | 9 | 0.16 | 5.4e-15 | 5.1 | -5.2 | 2.0e-07 | -0.58 | 1.00 | 0.00 | FALSE |
20 | GTEx | Nerve Tibial | CCBL2 | 0.42 | 0.33 | enet | 38 | 0.38 | 3.4e-28 | 5.1 | -5.4 | 8.0e-08 | -0.58 | 1.00 | 0.00 | FALSE |
21 | GTEx | Pancreas | CCBL2 | 0.26 | 0.21 | lasso | 4 | 0.23 | 5.3e-10 | 8.4 | -7.3 | 2.8e-13 | -0.70 | 0.17 | 0.81 | FALSE |
22 | GTEx | Pancreas | RBMXL1 | 0.27 | 0.16 | enet | 36 | 0.16 | 1.8e-07 | -5.2 | -5.4 | 7.6e-08 | -0.41 | 0.93 | 0.02 | FALSE |
23 | GTEx | Pituitary | CCBL2 | 0.45 | 0.30 | lasso | 2 | 0.26 | 2.7e-07 | 8.4 | -7.4 | 1.5e-13 | -0.72 | 0.20 | 0.78 | FALSE |
24 | GTEx | Stomach | CCBL2 | 0.16 | 0.08 | lasso | 4 | 0.15 | 9.0e-08 | 5.1 | -6.5 | 7.8e-11 | -0.72 | 0.55 | 0.40 | FALSE |
25 | GTEx | Testis | CCBL2 | 0.47 | 0.56 | lasso | 5 | 0.57 | 1.2e-30 | 5.1 | -5.1 | 2.9e-07 | -0.57 | 1.00 | 0.00 | FALSE |
26 | GTEx | Thyroid | CCBL2 | 0.22 | 0.15 | enet | 22 | 0.22 | 9.8e-17 | 8.4 | -7.0 | 2.2e-12 | -0.68 | 0.94 | 0.06 | FALSE |
27 | GTEx | Thyroid | RBMXL1 | 0.09 | 0.02 | enet | 19 | 0.04 | 2.7e-04 | 2.2 | -5.5 | 3.8e-08 | -0.60 | 0.04 | 0.88 | FALSE |
28 | METSIM | Adipose | CCBL2 | 0.27 | 0.14 | lasso | 6 | 0.18 | 6.4e-27 | 5.1 | -7.2 | 7.9e-13 | -0.71 | 1.00 | 0.00 | FALSE |
29 | ROSMAP | Brain Pre-frontal Cortex | CCBL2 | 0.43 | 0.56 | enet | 31 | 0.56 | 1.1e-87 | 5.1 | -6.2 | 5.4e-10 | -0.66 | 1.00 | 0.00 | FALSE |
30 | YFS | Blood | GTF2B | 0.01 | 0.00 | lasso | 3 | 0.01 | 2.3e-04 | 9.5 | 9.1 | 1.3e-19 | 0.86 | 0.01 | 0.98 | TRUE |
31 | The Cancer Genome Atlas | Breast Invasive Carcinoma | PKN2 | 0.02 | 0.01 | enet | 5 | 0.01 | 2.3e-03 | 6.8 | 7.0 | 2.6e-12 | 0.82 | 0.02 | 0.79 | FALSE |
32 | The Cancer Genome Atlas | Glioblastoma Multiforme | CCBL2 | 0.36 | 0.32 | enet | 37 | 0.33 | 6.4e-11 | 5.0 | -7.2 | 4.3e-13 | -0.69 | 0.02 | 0.98 | FALSE |
33 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | GTF2B | 0.04 | 0.01 | blup | 53 | 0.01 | 2.2e-02 | -4.6 | 6.8 | 1.3e-11 | 0.50 | 0.08 | 0.13 | FALSE |
34 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | CCBL2 | 0.28 | 0.42 | enet | 15 | 0.40 | 1.5e-24 | 5.1 | -5.4 | 6.5e-08 | -0.59 | 1.00 | 0.00 | FALSE |
35 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CCBL2 | 0.28 | 0.32 | enet | 24 | 0.31 | 2.5e-35 | 5.1 | -5.9 | 3.3e-09 | -0.61 | 1.00 | 0.00 | FALSE |
36 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PKN2 | 0.05 | 0.01 | enet | 8 | 0.02 | 1.6e-03 | 7.2 | 6.3 | 2.4e-10 | 0.75 | 0.11 | 0.82 | FALSE |
37 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | CCBL2 | 0.10 | 0.07 | enet | 12 | 0.08 | 2.0e-09 | 5.5 | -5.5 | 3.6e-08 | -0.53 | 0.98 | 0.01 | FALSE |
38 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | CCBL2 | 0.15 | 0.18 | lasso | 2 | 0.16 | 3.5e-07 | 5.4 | -5.4 | 7.5e-08 | -0.61 | 0.76 | 0.18 | FALSE |
39 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | CCBL2 | 0.37 | 0.47 | enet | 19 | 0.46 | 3.1e-20 | 5.5 | -5.2 | 1.5e-07 | -0.61 | 1.00 | 0.00 | FALSE |
40 | The Cancer Genome Atlas | Prostate Adenocarcinoma | CCBL2 | 0.20 | 0.34 | lasso | 2 | 0.35 | 9.5e-38 | 5.5 | -5.3 | 1.1e-07 | -0.58 | 1.00 | 0.00 | FALSE |
41 | The Cancer Genome Atlas | Rectum Adenocarcinoma | CCBL2 | 0.35 | 0.27 | lasso | 6 | 0.25 | 1.7e-06 | 5.5 | -5.5 | 3.9e-08 | -0.60 | 0.10 | 0.87 | FALSE |
42 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | GBP3 | 0.35 | 0.13 | blup | 43 | 0.12 | 4.2e-04 | 2.2 | -5.5 | 5.1e-08 | -0.43 | 0.06 | 0.26 | FALSE |