Best TWAS P=1.15e-24 · Best GWAS P=6.52e-22 conditioned to 0.0193
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ACE | 0.08 | 0.05 | lasso | 4 | 0.04 | 1.0e-05 | 5.092 | 6.1 | 9.8e-10 | -0.06 | 0.01 | 0.99 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | MARCH10 | 0.08 | 0.00 | bslmm | 252 | 0.02 | 2.3e-03 | 3.206 | -5.8 | 5.8e-09 | 0.02 | 0.03 | 0.60 | TRUE |
3 | GTEx | Adipose Visceral Omentum | TBX2 | 0.19 | 0.04 | lasso | 4 | 0.10 | 1.0e-05 | -9.071 | -6.5 | 7.4e-11 | -0.12 | 0.01 | 0.93 | FALSE |
4 | GTEx | Adipose Visceral Omentum | RP11-332H18.4 | 0.22 | 0.07 | lasso | 7 | 0.05 | 9.0e-04 | -9.071 | -8.6 | 1.0e-17 | -0.10 | 0.01 | 0.98 | FALSE |
5 | GTEx | Artery Tibial | DDX5 | 0.12 | 0.13 | lasso | 2 | 0.12 | 1.5e-09 | -7.226 | 7.2 | 6.1e-13 | -0.12 | 1.00 | 0.00 | TRUE |
6 | GTEx | Artery Tibial | TEX2 | 0.07 | 0.03 | lasso | 4 | 0.03 | 1.7e-03 | -8.804 | -10.3 | 1.2e-24 | 0.78 | 0.25 | 0.66 | TRUE |
7 | GTEx | Artery Tibial | RP11-332H18.4 | 0.18 | 0.15 | lasso | 1 | 0.14 | 4.5e-11 | -9.071 | -9.1 | 1.2e-19 | -0.09 | 0.00 | 1.00 | FALSE |
8 | GTEx | Cells Transformed fibroblasts | MRC2 | 0.10 | 0.02 | enet | 17 | 0.02 | 1.5e-02 | 4.263 | -5.1 | 2.8e-07 | 0.04 | 0.08 | 0.55 | FALSE |
9 | GTEx | Cells Transformed fibroblasts | RP11-332H18.4 | 0.19 | 0.16 | lasso | 4 | 0.14 | 1.7e-10 | -9.071 | -9.0 | 1.6e-19 | -0.09 | 0.00 | 1.00 | FALSE |
10 | GTEx | Colon Sigmoid | CD79B | 0.17 | 0.00 | lasso | 9 | 0.08 | 9.7e-04 | 0.093 | 5.8 | 6.5e-09 | -0.47 | 0.04 | 0.56 | FALSE |
11 | GTEx | Colon Transverse | ACE | 0.31 | 0.28 | lasso | 2 | 0.28 | 1.8e-13 | 7.543 | -7.0 | 3.0e-12 | 0.01 | 0.00 | 1.00 | FALSE |
12 | GTEx | Esophagus Mucosa | TEX2 | 0.17 | 0.08 | enet | 12 | 0.11 | 6.2e-08 | -5.491 | -7.7 | 9.7e-15 | 0.52 | 0.70 | 0.23 | FALSE |
13 | GTEx | Esophagus Mucosa | MIR5047 | 0.06 | 0.01 | lasso | 5 | 0.00 | 3.4e-01 | -7.428 | 8.2 | 2.2e-16 | -0.55 | 0.10 | 0.24 | FALSE |
14 | GTEx | Esophagus Mucosa | RP11-332H18.4 | 0.19 | 0.09 | lasso | 4 | 0.04 | 9.6e-04 | -9.071 | -9.2 | 4.1e-20 | -0.09 | 0.00 | 0.99 | TRUE |
15 | GTEx | Lung | TEX2 | 0.04 | 0.02 | enet | 13 | 0.01 | 5.0e-02 | -8.549 | -6.6 | 3.8e-11 | 0.41 | 0.09 | 0.44 | FALSE |
16 | GTEx | Lung | RP11-332H18.4 | 0.10 | 0.04 | enet | 3 | 0.07 | 6.8e-06 | -9.071 | -8.1 | 8.1e-16 | -0.08 | 0.01 | 0.99 | FALSE |
17 | GTEx | Testis | TBX2 | 0.20 | 0.18 | lasso | 3 | 0.15 | 4.8e-07 | -9.071 | -9.1 | 7.3e-20 | -0.09 | 0.00 | 1.00 | FALSE |
18 | GTEx | Testis | RP11-332H18.4 | 0.19 | 0.19 | lasso | 2 | 0.16 | 1.6e-07 | -9.003 | -9.2 | 4.4e-20 | -0.08 | 0.01 | 0.99 | FALSE |
19 | GTEx | Thyroid | TBX2 | 0.10 | 0.09 | lasso | 2 | 0.06 | 1.7e-05 | -9.071 | -9.1 | 1.2e-19 | -0.09 | 0.00 | 0.99 | FALSE |
20 | GTEx | Vagina | SMURF2 | 0.32 | 0.00 | enet | 1 | 0.06 | 1.4e-02 | -5.455 | -5.5 | 4.9e-08 | 0.03 | 0.03 | 0.16 | FALSE |
21 | NTR | Blood | DDX5 | 0.10 | 0.04 | lasso | 3 | 0.04 | 5.2e-13 | -7.226 | 7.1 | 1.4e-12 | -0.12 | 1.00 | 0.00 | FALSE |
22 | YFS | Blood | DDX5 | 0.42 | 0.21 | bslmm | 215 | 0.21 | 7.7e-68 | -7.226 | 6.8 | 7.2e-12 | -0.08 | 1.00 | 0.00 | FALSE |
23 | YFS | Blood | ERN1 | 0.01 | 0.00 | bslmm | 309 | 0.00 | 5.9e-02 | -8.804 | 6.2 | 4.3e-10 | -0.36 | 0.02 | 0.05 | FALSE |
24 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | C17orf82 | 0.03 | 0.02 | blup | 42 | 0.00 | 1.3e-01 | -6.350 | 8.0 | 1.4e-15 | 0.06 | 0.06 | 0.58 | FALSE |
25 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ACE | 0.02 | 0.01 | enet | 3 | 0.01 | 1.3e-03 | 4.712 | 6.0 | 1.8e-09 | 0.01 | 0.00 | 0.98 | FALSE |
26 | The Cancer Genome Atlas | Colon Adenocarcinoma | ACE | 0.34 | 0.22 | lasso | 5 | 0.22 | 6.5e-13 | 4.712 | -6.2 | 4.8e-10 | -0.01 | 0.00 | 1.00 | FALSE |
27 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | ACE | 0.16 | 0.08 | lasso | 2 | 0.07 | 5.8e-05 | 4.712 | -6.4 | 1.7e-10 | -0.01 | 0.00 | 1.00 | FALSE |
28 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | TEX2 | 0.02 | 0.00 | blup | 42 | 0.01 | 4.4e-02 | -7.428 | -8.5 | 2.2e-17 | 0.60 | 0.02 | 0.74 | FALSE |
29 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | TEX2 | 0.06 | 0.01 | blup | 42 | 0.01 | 3.9e-02 | -6.063 | -8.1 | 4.1e-16 | 0.50 | 0.01 | 0.82 | FALSE |
30 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | ACE | 0.13 | 0.14 | lasso | 1 | 0.10 | 6.6e-05 | 7.543 | -7.5 | 4.6e-14 | 0.00 | 0.00 | 1.00 | TRUE |
31 | The Cancer Genome Atlas | Rectum Adenocarcinoma | ACE | 0.16 | 0.14 | lasso | 6 | 0.13 | 5.1e-04 | 7.543 | -7.5 | 6.9e-14 | 0.03 | 0.00 | 0.88 | FALSE |