Best TWAS P=2.45e-20 · Best GWAS P=2.31e-16 conditioned to 0.627
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ADCY3 | 0.16 | 0.12 | lasso | 10 | 0.14 | 3.2e-17 | -8.21 | 5.6 | 2.5e-08 | -0.89 | 0.01 | 0.99 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | CENPO | 0.07 | 0.03 | bslmm | 322 | 0.03 | 7.0e-05 | -0.74 | 5.2 | 1.6e-07 | -0.49 | 0.55 | 0.14 | FALSE |
3 | GTEx | Adipose Subcutaneous | ADCY3 | 0.07 | 0.04 | lasso | 6 | 0.01 | 3.2e-02 | -8.01 | -7.7 | 1.3e-14 | 0.87 | 0.05 | 0.94 | FALSE |
4 | GTEx | Adipose Subcutaneous | RP11-443B20.1 | 0.04 | 0.00 | enet | 10 | 0.00 | 1.2e-01 | -3.17 | -5.2 | 2.0e-07 | 0.83 | 0.05 | 0.87 | FALSE |
5 | GTEx | Adipose Visceral Omentum | NCOA1 | 0.11 | 0.02 | enet | 17 | 0.02 | 2.1e-02 | -6.17 | -7.2 | 5.4e-13 | 0.34 | 0.08 | 0.55 | FALSE |
6 | GTEx | Adrenal Gland | PTRHD1 | 0.32 | 0.28 | lasso | 3 | 0.26 | 8.3e-10 | 5.53 | -5.5 | 2.8e-08 | 0.41 | 0.98 | 0.00 | FALSE |
7 | GTEx | Artery Aorta | NCOA1 | 0.15 | 0.00 | enet | 15 | 0.01 | 1.4e-01 | -7.05 | -6.2 | 5.9e-10 | 0.37 | 0.06 | 0.26 | FALSE |
8 | GTEx | Artery Tibial | ADCY3 | 0.21 | 0.14 | lasso | 6 | 0.15 | 4.3e-12 | -6.94 | -6.6 | 3.9e-11 | 0.70 | 0.42 | 0.58 | FALSE |
9 | GTEx | Cells EBV-transformed lymphocytes | ADCY3 | 0.25 | 0.23 | enet | 10 | 0.12 | 9.2e-05 | -8.01 | 9.2 | 2.5e-20 | -0.84 | 0.03 | 0.96 | TRUE |
10 | GTEx | Cells EBV-transformed lymphocytes | RP11-443B20.1 | 0.13 | 0.13 | enet | 9 | 0.05 | 9.2e-03 | -8.01 | 8.8 | 1.2e-18 | -0.93 | 0.03 | 0.92 | FALSE |
11 | GTEx | Esophagus Muscularis | NCOA1 | 0.11 | 0.01 | enet | 9 | 0.01 | 5.8e-02 | -8.11 | -7.7 | 1.7e-14 | 0.45 | 0.04 | 0.59 | FALSE |
12 | GTEx | Muscle Skeletal | UBXN2A | 0.10 | 0.04 | lasso | 7 | 0.03 | 5.5e-04 | 5.02 | 5.5 | 4.6e-08 | 0.06 | 0.48 | 0.51 | FALSE |
13 | GTEx | Nerve Tibial | ADCY3 | 0.09 | 0.05 | enet | 6 | 0.03 | 2.2e-03 | -6.94 | 8.1 | 5.5e-16 | -0.92 | 0.03 | 0.97 | FALSE |
14 | GTEx | Nerve Tibial | RP11-443B20.1 | 0.07 | 0.03 | enet | 6 | 0.02 | 1.1e-02 | -6.94 | 6.8 | 1.3e-11 | -0.82 | 0.06 | 0.92 | FALSE |
15 | GTEx | Prostate | FAM228B | 0.16 | 0.02 | enet | 31 | 0.07 | 9.6e-03 | 4.06 | -5.7 | 1.1e-08 | -0.02 | 0.15 | 0.12 | FALSE |
16 | GTEx | Skin Not Sun Exposed Suprapubic | UBXN2A | 0.12 | 0.06 | enet | 33 | 0.12 | 6.8e-07 | 4.16 | 6.3 | 2.4e-10 | -0.03 | 0.66 | 0.26 | TRUE |
17 | GTEx | Whole Blood | DNAJC27 | 0.08 | 0.10 | lasso | 1 | 0.10 | 2.2e-09 | -7.77 | -7.8 | 7.6e-15 | 0.80 | 0.14 | 0.86 | FALSE |
18 | GTEx | Whole Blood | ADCY3 | 0.23 | 0.24 | enet | 24 | 0.27 | 5.5e-25 | -7.57 | -7.3 | 2.5e-13 | 0.87 | 0.19 | 0.81 | FALSE |
19 | GTEx | Whole Blood | RP11-443B20.1 | 0.21 | 0.17 | enet | 32 | 0.20 | 1.8e-18 | -7.77 | -7.0 | 2.1e-12 | 0.87 | 0.15 | 0.85 | FALSE |
20 | METSIM | Adipose | EFR3B | 0.04 | 0.00 | bslmm | 357 | 0.00 | 9.7e-02 | 4.41 | 5.4 | 8.0e-08 | -0.37 | 0.04 | 0.31 | FALSE |
21 | ROSMAP | Brain Pre-frontal Cortex | ADCY3 | 0.17 | 0.26 | enet | 32 | 0.26 | 6.8e-33 | -7.57 | 7.2 | 8.5e-13 | -0.90 | 0.27 | 0.73 | FALSE |
22 | YFS | Blood | CENPO | 0.09 | 0.06 | lasso | 6 | 0.07 | 6.7e-21 | -6.16 | 5.8 | 5.0e-09 | -0.24 | 1.00 | 0.00 | FALSE |
23 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ADCY3 | 0.05 | 0.03 | blup | 81 | 0.03 | 5.0e-07 | -5.70 | 6.1 | 1.3e-09 | -0.51 | 0.59 | 0.36 | FALSE |
24 | The Cancer Genome Atlas | Glioblastoma Multiforme | ADCY3 | 0.36 | 0.14 | enet | 7 | 0.13 | 8.9e-05 | -7.83 | 8.0 | 1.4e-15 | -0.38 | 0.02 | 0.42 | FALSE |
25 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ADCY3 | 0.08 | 0.03 | enet | 16 | 0.03 | 1.5e-04 | -5.59 | 6.7 | 2.4e-11 | -0.18 | 0.03 | 0.08 | FALSE |
26 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | EFR3B | 0.03 | 0.05 | lasso | 1 | 0.04 | 1.9e-05 | 6.24 | 6.2 | 4.3e-10 | -0.64 | 0.58 | 0.02 | FALSE |
27 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ADCY3 | 0.03 | 0.02 | blup | 81 | 0.02 | 7.1e-04 | -7.77 | 8.4 | 3.4e-17 | -0.89 | 0.03 | 0.95 | FALSE |
28 | The Cancer Genome Atlas | Lung Adenocarcinoma | DNAJC27 | 0.05 | 0.01 | blup | 46 | 0.04 | 3.2e-05 | -3.69 | 7.3 | 2.2e-13 | -0.55 | 0.43 | 0.50 | FALSE |
29 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | EFR3B | 0.26 | 0.01 | lasso | 4 | 0.05 | 3.8e-03 | -8.11 | -7.6 | 2.5e-14 | 0.35 | 0.00 | 0.92 | FALSE |