[Hub]/) : Traits : Schizophrenia (2014) : ← →

chr2:197,134,790-202,078,494

Best TWAS P=2.05e-13 · Best GWAS P=1.11e-11 conditioned to 0.853

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	CommonMind	Brain Pre-frontal Cortex	C2orf47	0.05	0.02	blup	361	0.02	4.3e-03	6.8	-7.3	2.1e-13	-0.85	0.01	0.99	TRUE
4	GTEx	Breast Mammary Tissue	SF3B1	0.06	0.06	lasso	4	0.03	6.6e-03	6.6	6.7	1.5e-11	0.06	0.04	0.92	TRUE
20	GTEx	Testis	C2orf69	0.14	0.09	enet	17	0.10	2.7e-05	6.8	6.8	9.7e-12	0.93	0.02	0.98	FALSE
5	GTEx	Breast Mammary Tissue (Female)	SF3B1	0.05	-0.01	lasso	3	-0.01	8.1e-01	6.7	6.7	1.7e-11	0.07	0.03	0.43	FALSE
12	GTEx	Pituitary	HSPD1	0.10	0.03	enet	12	0.06	1.3e-02	4.8	6.7	2.1e-11	0.09	0.08	0.39	FALSE
27	YFS	Blood	ANKRD44	0.02	0.00	blup	416	0.01	6.3e-04	2.4	-6.6	3.4e-11	-0.04	0.10	0.63	FALSE
2	CommonMind	Brain Pre-frontal Cortex	SF3B1	0.06	0.07	enet	10	0.07	2.5e-09	6.6	6.6	4.2e-11	0.05	0.02	0.98	FALSE
23	GTEx	Whole Blood	C2orf47	0.04	0.05	lasso	2	0.03	3.6e-04	6.6	6.6	4.4e-11	1.00	0.02	0.97	FALSE
25	NTR	Blood	ANKRD44	0.03	0.00	bslmm	417	0.02	2.7e-06	6.0	-6.5	7.7e-11	-0.07	0.07	0.88	FALSE
8	GTEx	Esophagus Mucosa	SF3B1	0.04	0.02	lasso	4	0.01	5.7e-02	6.4	6.5	8.0e-11	0.06	0.05	0.85	FALSE
19	GTEx	Testis	SF3B1	0.10	0.07	enet	17	0.08	2.6e-04	6.6	6.3	3.5e-10	0.07	0.03	0.96	FALSE
28	The Cancer Genome Atlas	Colon Adenocarcinoma	C2orf60	0.08	0.06	enet	11	0.06	1.4e-04	6.6	-6.3	3.6e-10	-0.91	0.01	0.94	FALSE
11	GTEx	Nerve Tibial	SF3B1	0.06	0.09	lasso	8	0.08	3.3e-06	6.7	6.2	4.2e-10	0.06	0.08	0.92	FALSE
30	The Cancer Genome Atlas	Ovarian Serous Cystadenocarcinoma	RFTN2	0.05	0.01	blup	61	0.02	3.1e-02	6.5	6.2	6.0e-10	0.07	0.02	0.71	FALSE
26	ROSMAP	Brain Pre-frontal Cortex	SF3B1	0.02	0.01	blup	336	0.01	6.2e-03	5.4	6.0	2.0e-09	0.07	0.06	0.91	FALSE
31	The Cancer Genome Atlas	Testicular Germ Cell Tumors	C2orf47	0.15	0.05	blup	39	0.05	7.6e-03	6.7	-5.8	6.8e-09	-0.94	0.00	0.97	FALSE
10	GTEx	Lung	SF3B1	0.06	0.04	enet	23	0.02	2.2e-02	6.4	5.8	9.1e-09	0.07	0.03	0.94	FALSE
14	GTEx	Spleen	KCTD18	0.26	0.03	lasso	4	0.04	3.8e-02	4.8	5.7	1.0e-08	0.85	0.11	0.35	FALSE
24	METSIM	Adipose	C2orf69	0.04	0.03	blup	376	0.04	1.3e-06	4.2	5.7	1.0e-08	0.84	0.04	0.96	FALSE
13	GTEx	Skin Not Sun Exposed Suprapubic	SF3B1	0.08	0.00	enet	19	0.01	1.6e-01	6.5	5.7	1.2e-08	0.07	0.04	0.89	FALSE
21	GTEx	Thyroid	SF3B1	0.04	0.02	enet	14	0.02	2.0e-02	5.3	5.7	1.2e-08	0.08	0.09	0.83	FALSE
7	GTEx	Cells Transformed fibroblasts	C2orf69	0.07	0.10	enet	17	0.10	2.7e-08	6.7	5.7	1.5e-08	0.92	0.01	0.99	FALSE
29	The Cancer Genome Atlas	Head and Neck Squamous Cell Carcinoma	C2orf69	0.02	0.00	blup	35	0.01	2.6e-02	3.3	5.7	1.6e-08	0.85	0.02	0.76	FALSE
32	The Cancer Genome Atlas	Testicular Germ Cell Tumors	C2orf60	0.15	0.05	enet	12	0.08	8.2e-04	6.6	-5.6	2.0e-08	-0.86	0.01	0.98	FALSE
22	GTEx	Thyroid	PLCL1	0.04	0.01	lasso	4	0.00	2.6e-01	4.4	5.5	3.4e-08	0.08	0.16	0.60	FALSE
3	GTEx	Brain Caudate basal ganglia	TYW5	0.23	0.11	lasso	3	0.11	5.4e-04	4.4	-5.5	3.7e-08	-0.52	0.06	0.37	FALSE
18	GTEx	Testis	ANKRD44	0.33	0.35	enet	15	0.36	6.2e-17	5.7	5.4	7.9e-08	0.07	0.74	0.26	FALSE
9	GTEx	Esophagus Muscularis	SF3B1	0.06	0.02	lasso	4	0.03	1.0e-02	5.6	5.3	1.1e-07	0.03	0.07	0.67	FALSE
15	GTEx	Spleen	RFTN2	0.11	0.03	enet	26	0.05	2.4e-02	4.8	5.2	1.5e-07	0.08	0.11	0.23	FALSE
16	GTEx	Spleen	MARS2	0.12	0.04	lasso	5	0.00	3.4e-01	4.7	-5.2	1.8e-07	-0.07	0.08	0.23	FALSE
6	GTEx	Cells EBV-transformed lymphocytes	MARS2	0.15	0.14	lasso	4	0.07	2.6e-03	-5.1	-5.1	2.8e-07	-0.09	0.13	0.30	FALSE
17	GTEx	Stomach	SF3B1	0.11	0.00	enet	19	0.00	4.0e-01	5.6	5.1	3.0e-07	0.06	0.06	0.44	FALSE