Best TWAS P=9.94e-23 · Best GWAS P=2.77e-21 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ADCY3 | 0.16 | 0.12 | lasso | 10 | 0.14 | 3.2e-17 | -9.3 | 8.6 | 7.4e-18 | -0.80 | 0.02 | 0.98 | TRUE |
2 | CommonMind | Brain Pre-frontal Cortex | CENPO | 0.07 | 0.03 | bslmm | 322 | 0.03 | 7.0e-05 | -4.6 | 7.7 | 2.1e-14 | -0.52 | 0.48 | 0.24 | FALSE |
3 | GTEx | Adipose Subcutaneous | ADCY3 | 0.07 | 0.04 | lasso | 6 | 0.01 | 3.2e-02 | -8.9 | -8.5 | 1.4e-17 | 0.75 | 0.05 | 0.94 | FALSE |
4 | GTEx | Adipose Subcutaneous | UBXN2A | 0.06 | 0.04 | lasso | 5 | 0.04 | 5.2e-04 | -6.6 | -6.1 | 9.6e-10 | 0.09 | 0.26 | 0.72 | FALSE |
5 | GTEx | Adipose Subcutaneous | RP11-443B20.1 | 0.04 | 0.00 | enet | 10 | 0.00 | 1.2e-01 | -2.3 | -5.9 | 3.6e-09 | 0.71 | 0.04 | 0.88 | FALSE |
6 | GTEx | Adipose Visceral Omentum | NCOA1 | 0.11 | 0.02 | enet | 17 | 0.02 | 2.1e-02 | -5.1 | -5.5 | 3.9e-08 | 0.36 | 0.17 | 0.10 | FALSE |
7 | GTEx | Adipose Visceral Omentum | UBXN2A | 0.10 | 0.08 | enet | 29 | 0.03 | 9.8e-03 | -6.6 | -6.0 | 1.9e-09 | 0.10 | 0.08 | 0.89 | FALSE |
8 | GTEx | Adrenal Gland | PTRHD1 | 0.32 | 0.28 | lasso | 3 | 0.26 | 8.3e-10 | 6.4 | -6.5 | 9.4e-11 | 0.39 | 0.98 | 0.00 | TRUE |
9 | GTEx | Artery Aorta | NCOA1 | 0.15 | 0.00 | enet | 15 | 0.01 | 1.4e-01 | -6.1 | -7.3 | 2.0e-13 | 0.31 | 0.07 | 0.13 | TRUE |
10 | GTEx | Artery Aorta | UBXN2A | 0.20 | 0.09 | lasso | 6 | 0.08 | 4.1e-05 | -4.0 | -5.2 | 2.1e-07 | 0.10 | 0.79 | 0.21 | FALSE |
11 | GTEx | Artery Tibial | ADCY3 | 0.21 | 0.14 | lasso | 6 | 0.15 | 4.3e-12 | -7.7 | -8.4 | 2.9e-17 | 0.63 | 0.78 | 0.22 | FALSE |
12 | GTEx | Artery Tibial | UBXN2A | 0.12 | 0.06 | enet | 24 | 0.09 | 1.5e-07 | -4.0 | -6.4 | 1.8e-10 | 0.12 | 0.78 | 0.22 | FALSE |
13 | GTEx | Artery Tibial | RP11-443B20.1 | 0.17 | 0.08 | enet | 40 | 0.09 | 8.2e-08 | -7.7 | -7.4 | 1.1e-13 | 0.54 | 0.21 | 0.78 | TRUE |
14 | GTEx | Cells EBV-transformed lymphocytes | ADCY3 | 0.25 | 0.23 | enet | 10 | 0.12 | 9.2e-05 | -8.9 | 9.8 | 9.9e-23 | -0.77 | 0.06 | 0.93 | TRUE |
15 | GTEx | Cells EBV-transformed lymphocytes | RP11-443B20.1 | 0.13 | 0.13 | enet | 9 | 0.05 | 9.2e-03 | -8.9 | 9.7 | 2.4e-22 | -0.83 | 0.04 | 0.90 | FALSE |
16 | GTEx | Colon Transverse | UBXN2A | 0.11 | 0.01 | enet | 8 | 0.03 | 8.7e-03 | -6.6 | -7.3 | 3.5e-13 | 0.12 | 0.07 | 0.72 | FALSE |
17 | GTEx | Esophagus Muscularis | NCOA1 | 0.11 | 0.01 | enet | 9 | 0.01 | 5.8e-02 | -6.2 | -8.8 | 1.4e-18 | 0.48 | 0.08 | 0.11 | FALSE |
18 | GTEx | Lung | NCOA1 | 0.12 | 0.04 | lasso | 7 | 0.06 | 1.9e-05 | -1.9 | -6.6 | 3.4e-11 | 0.23 | 0.51 | 0.03 | TRUE |
19 | GTEx | Lung | UBXN2A | 0.09 | 0.06 | enet | 7 | 0.07 | 6.1e-06 | -4.4 | -6.6 | 3.8e-11 | 0.11 | 0.26 | 0.73 | FALSE |
20 | GTEx | Muscle Skeletal | UBXN2A | 0.10 | 0.04 | lasso | 7 | 0.03 | 5.5e-04 | -4.4 | -5.8 | 8.2e-09 | 0.09 | 0.25 | 0.75 | FALSE |
21 | GTEx | Nerve Tibial | ADCY3 | 0.09 | 0.05 | enet | 6 | 0.03 | 2.2e-03 | -7.7 | 9.7 | 5.0e-22 | -0.81 | 0.04 | 0.96 | FALSE |
22 | GTEx | Nerve Tibial | RP11-443B20.1 | 0.07 | 0.03 | enet | 6 | 0.02 | 1.1e-02 | -7.7 | 8.8 | 1.2e-18 | -0.71 | 0.06 | 0.92 | FALSE |
23 | GTEx | Skin Sun Exposed Lower leg | UBXN2A | 0.08 | 0.04 | enet | 17 | 0.03 | 1.3e-03 | -6.6 | -5.9 | 3.1e-09 | 0.11 | 0.57 | 0.33 | FALSE |
24 | GTEx | Small Intestine Terminal Ileum | UBXN2A | 0.18 | 0.08 | enet | 33 | 0.16 | 2.5e-04 | -6.6 | -6.4 | 2.0e-10 | 0.15 | 0.03 | 0.90 | FALSE |
25 | GTEx | Spleen | UBXN2A | 0.31 | 0.11 | enet | 19 | 0.17 | 4.1e-05 | 7.4 | -8.3 | 8.6e-17 | 0.14 | 0.04 | 0.92 | TRUE |
26 | GTEx | Stomach | UBXN2A | 0.13 | 0.14 | enet | 5 | 0.14 | 3.6e-07 | -4.0 | -5.4 | 5.5e-08 | 0.09 | 0.58 | 0.31 | FALSE |
27 | GTEx | Whole Blood | DNAJC27 | 0.08 | 0.10 | lasso | 1 | 0.10 | 2.2e-09 | -8.7 | -8.7 | 2.9e-18 | 0.69 | 0.12 | 0.88 | FALSE |
28 | GTEx | Whole Blood | ADCY3 | 0.23 | 0.24 | enet | 24 | 0.27 | 5.5e-25 | -9.2 | -9.3 | 1.9e-20 | 0.76 | 0.05 | 0.95 | TRUE |
29 | GTEx | Whole Blood | UBXN2A | 0.17 | 0.07 | lasso | 8 | 0.09 | 2.1e-08 | -4.4 | -7.4 | 1.3e-13 | 0.12 | 0.03 | 0.97 | FALSE |
30 | GTEx | Whole Blood | RP11-443B20.1 | 0.21 | 0.17 | enet | 32 | 0.20 | 1.8e-18 | -8.7 | -9.0 | 2.1e-19 | 0.77 | 0.08 | 0.92 | FALSE |
31 | ROSMAP | Brain Pre-frontal Cortex | ADCY3 | 0.17 | 0.26 | enet | 32 | 0.26 | 6.8e-33 | -9.2 | 9.7 | 4.1e-22 | -0.80 | 0.04 | 0.96 | FALSE |
32 | YFS | Blood | ADCY3 | 0.07 | 0.02 | bslmm | 343 | 0.04 | 7.3e-14 | -9.2 | 5.3 | 9.8e-08 | -0.47 | 0.02 | 0.98 | TRUE |
33 | YFS | Blood | CENPO | 0.09 | 0.06 | lasso | 6 | 0.07 | 6.7e-21 | -5.2 | 5.5 | 3.0e-08 | -0.25 | 1.00 | 0.00 | FALSE |
34 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ADCY3 | 0.05 | 0.03 | blup | 81 | 0.03 | 5.0e-07 | -5.7 | 8.0 | 9.7e-16 | -0.48 | 0.65 | 0.30 | FALSE |
35 | The Cancer Genome Atlas | Glioblastoma Multiforme | ADCY3 | 0.36 | 0.14 | enet | 7 | 0.13 | 8.9e-05 | -6.5 | 7.1 | 1.6e-12 | -0.32 | 0.04 | 0.18 | TRUE |
36 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ADCY3 | 0.08 | 0.03 | enet | 16 | 0.03 | 1.5e-04 | -5.7 | 6.3 | 2.6e-10 | -0.10 | 0.03 | 0.07 | FALSE |
37 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | EFR3B | 0.03 | 0.05 | lasso | 1 | 0.04 | 1.9e-05 | 5.7 | 5.7 | 9.9e-09 | -0.71 | 0.55 | 0.06 | FALSE |
38 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | NCOA1 | 0.08 | 0.07 | blup | 77 | 0.05 | 5.8e-04 | 2.6 | -5.8 | 5.0e-09 | 0.21 | 0.10 | 0.63 | TRUE |
39 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ADCY3 | 0.03 | 0.02 | blup | 81 | 0.02 | 7.1e-04 | -6.7 | 8.7 | 4.6e-18 | -0.77 | 0.05 | 0.90 | FALSE |
40 | The Cancer Genome Atlas | Lung Adenocarcinoma | DNAJC27 | 0.05 | 0.01 | blup | 46 | 0.04 | 3.2e-05 | -2.6 | 5.6 | 1.9e-08 | -0.52 | 0.53 | 0.38 | FALSE |
41 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | ADCY3 | 0.06 | 0.01 | enet | 9 | 0.02 | 1.0e-03 | -5.6 | 6.0 | 2.6e-09 | -0.23 | 0.06 | 0.04 | FALSE |
42 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | UBXN2A | 0.03 | 0.02 | blup | 46 | 0.03 | 5.7e-04 | -4.4 | -5.8 | 6.5e-09 | 0.09 | 0.26 | 0.40 | FALSE |
43 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | EFR3B | 0.26 | 0.01 | lasso | 4 | 0.05 | 3.8e-03 | -6.2 | -5.5 | 3.1e-08 | 0.41 | 0.03 | 0.15 | FALSE |