Best TWAS P=2.1e-10 · Best GWAS P=8.08e-08 conditioned to 0.968
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | TRIOBP | 0.13 | 0.14 | lasso | 7 | 0.14 | 3.9e-11 | 5.1 | -5.2 | 2.4e-07 | -0.86 | 0.05 | 0.95 | FALSE |
2 | GTEx | Adipose Subcutaneous | ANKRD54 | 0.14 | 0.02 | enet | 18 | 0.06 | 5.9e-06 | -4.9 | -5.6 | 1.8e-08 | -0.27 | 0.04 | 0.74 | FALSE |
3 | GTEx | Artery Aorta | C22orf23 | 0.10 | 0.01 | enet | 24 | 0.02 | 1.6e-02 | 4.0 | 6.4 | 2.1e-10 | 0.70 | 0.06 | 0.76 | TRUE |
4 | GTEx | Artery Aorta | PLA2G6 | 0.10 | 0.02 | enet | 9 | 0.02 | 4.5e-02 | 3.7 | 5.8 | 6.7e-09 | 0.28 | 0.12 | 0.30 | FALSE |
5 | GTEx | Artery Aorta | AL021977.1 | 0.13 | 0.00 | enet | 17 | 0.01 | 8.7e-02 | 3.4 | -5.3 | 9.2e-08 | -0.30 | 0.10 | 0.10 | FALSE |
6 | GTEx | Artery Tibial | MICALL1 | 0.11 | 0.04 | lasso | 4 | 0.05 | 8.4e-05 | 4.3 | 5.2 | 2.2e-07 | 0.66 | 0.28 | 0.54 | FALSE |
7 | GTEx | Cells Transformed fibroblasts | ANKRD54 | 0.11 | 0.09 | lasso | 4 | 0.09 | 5.3e-07 | -4.9 | -5.6 | 1.9e-08 | -0.44 | 0.03 | 0.96 | FALSE |
8 | GTEx | Muscle Skeletal | GCAT | 0.13 | 0.10 | enet | 17 | 0.10 | 3.9e-10 | 5.1 | 5.5 | 3.0e-08 | 0.88 | 0.03 | 0.96 | FALSE |
9 | GTEx | Muscle Skeletal | ANKRD54 | 0.15 | 0.02 | enet | 21 | 0.04 | 1.1e-04 | -4.9 | -5.5 | 2.9e-08 | -0.38 | 0.08 | 0.90 | FALSE |
10 | GTEx | Skin Sun Exposed Lower leg | ANKRD54 | 0.07 | 0.04 | enet | 17 | 0.04 | 1.6e-04 | -4.9 | -5.5 | 4.3e-08 | -0.47 | 0.04 | 0.92 | FALSE |
11 | NTR | Blood | SH3BP1 | 0.02 | 0.00 | blup | 497 | 0.01 | 5.0e-03 | 4.1 | 5.3 | 1.4e-07 | 0.65 | 0.04 | 0.58 | FALSE |
12 | ROSMAP | Brain Pre-frontal Cortex | ANKRD54 | 0.03 | 0.00 | blup | 397 | 0.01 | 2.2e-02 | 3.5 | -5.5 | 4.2e-08 | -0.73 | 0.10 | 0.44 | FALSE |
13 | The Cancer Genome Atlas | Prostate Adenocarcinoma | TRIOBP | 0.07 | 0.04 | blup | 67 | 0.03 | 2.1e-04 | 4.9 | -5.2 | 1.8e-07 | -0.87 | 0.03 | 0.96 | FALSE |
14 | The Cancer Genome Atlas | Thyroid Carcinoma | GCAT | 0.02 | 0.03 | blup | 29 | 0.03 | 1.4e-03 | 5.1 | 5.3 | 1.3e-07 | 0.86 | 0.01 | 0.80 | FALSE |
15 | The Cancer Genome Atlas | Thyroid Carcinoma | GGA1 | 0.04 | 0.01 | blup | 55 | 0.02 | 1.7e-03 | 4.7 | 5.9 | 4.6e-09 | 0.46 | 0.00 | 0.86 | TRUE |