Best TWAS P=9.26e-50 · Best GWAS P=2.14e-53 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ATOH7 | 0.10 | 0.08 | lasso | 10 | 0.09 | 4.3e-11 | -10.4 | 9.8 | 1.8e-22 | 0.56 | 1.00 | 0.00 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | DNA2 | 0.29 | 0.24 | lasso | 9 | 0.29 | 2.5e-35 | -10.6 | 8.3 | 1.2e-16 | 0.23 | 1.00 | 0.00 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | PBLD | 0.07 | 0.09 | lasso | 3 | 0.08 | 4.8e-10 | -11.4 | -11.6 | 4.1e-31 | -0.39 | 1.00 | 0.00 | FALSE |
4 | CommonMind | Brain Pre-frontal Cortex | SLC25A16 | 0.17 | 0.04 | lasso | 5 | 0.09 | 1.5e-11 | -11.9 | -6.8 | 9.4e-12 | -0.13 | 1.00 | 0.00 | FALSE |
5 | CommonMind | Brain Pre-frontal Cortex | STOX1 | 0.14 | 0.08 | enet | 25 | 0.15 | 3.2e-18 | -6.7 | -11.1 | 9.9e-29 | -0.03 | 1.00 | 0.00 | FALSE |
6 | GTEx | Adipose Subcutaneous | PBLD | 0.14 | 0.12 | lasso | 3 | 0.09 | 3.8e-08 | -11.4 | -11.6 | 4.0e-31 | -0.39 | 1.00 | 0.00 | FALSE |
7 | GTEx | Adipose Subcutaneous | DNA2 | 0.31 | 0.23 | enet | 10 | 0.25 | 2.3e-20 | -10.5 | 11.6 | 7.0e-31 | 0.32 | 1.00 | 0.00 | FALSE |
8 | GTEx | Adipose Visceral Omentum | DNA2 | 0.32 | 0.18 | lasso | 9 | 0.20 | 1.9e-10 | -12.0 | 12.1 | 1.1e-33 | 0.31 | 1.00 | 0.00 | FALSE |
9 | GTEx | Adrenal Gland | DNA2 | 0.16 | 0.12 | lasso | 6 | 0.10 | 2.2e-04 | -10.5 | 11.8 | 6.8e-32 | 0.31 | 0.45 | 0.12 | FALSE |
10 | GTEx | Adrenal Gland | STOX1 | 0.47 | 0.46 | lasso | 4 | 0.46 | 3.1e-18 | -5.7 | -6.7 | 2.9e-11 | -0.11 | 1.00 | 0.00 | FALSE |
11 | GTEx | Artery Aorta | PBLD | 0.14 | 0.10 | lasso | 8 | 0.06 | 3.1e-04 | -11.4 | -11.9 | 2.0e-32 | -0.43 | 0.98 | 0.01 | TRUE |
12 | GTEx | Artery Aorta | DNA2 | 0.22 | 0.17 | lasso | 6 | 0.16 | 5.1e-09 | -10.5 | 11.8 | 4.4e-32 | 0.30 | 1.00 | 0.00 | FALSE |
13 | GTEx | Artery Aorta | STOX1 | 0.18 | 0.14 | enet | 13 | 0.10 | 3.6e-06 | -6.7 | -8.8 | 1.6e-18 | 0.05 | 1.00 | 0.00 | TRUE |
14 | GTEx | Artery Coronary | DNA2 | 0.12 | 0.12 | lasso | 5 | 0.12 | 5.3e-05 | -12.2 | 13.0 | 1.5e-38 | 0.34 | 0.27 | 0.30 | FALSE |
15 | GTEx | Artery Tibial | PBLD | 0.06 | 0.09 | lasso | 2 | 0.07 | 2.5e-06 | -11.4 | -11.4 | 2.5e-30 | -0.39 | 0.91 | 0.02 | FALSE |
16 | GTEx | Artery Tibial | DNA2 | 0.10 | 0.09 | lasso | 3 | 0.11 | 4.4e-09 | -12.2 | 12.0 | 4.3e-33 | 0.30 | 0.99 | 0.00 | FALSE |
17 | GTEx | Brain Caudate basal ganglia | PBLD | 0.17 | 0.14 | lasso | 16 | 0.13 | 1.2e-04 | -11.4 | -13.1 | 2.5e-39 | -0.48 | 0.62 | 0.07 | FALSE |
18 | GTEx | Brain Cerebellar Hemisphere | SLC25A16 | 0.30 | 0.16 | lasso | 3 | 0.08 | 4.0e-03 | -10.6 | -10.8 | 5.1e-27 | -0.28 | 0.59 | 0.02 | FALSE |
19 | GTEx | Brain Cerebellar Hemisphere | DNA2 | 0.28 | 0.29 | lasso | 11 | 0.27 | 1.4e-07 | -10.6 | 11.4 | 2.7e-30 | 0.30 | 0.71 | 0.04 | FALSE |
20 | GTEx | Brain Cerebellar Hemisphere | STOX1 | 0.45 | 0.28 | lasso | 9 | 0.27 | 1.2e-07 | -6.7 | -9.0 | 2.2e-19 | 0.03 | 0.65 | 0.28 | FALSE |
21 | GTEx | Brain Cerebellum | SLC25A16 | 0.22 | 0.15 | lasso | 9 | 0.19 | 2.2e-06 | -10.6 | -11.5 | 1.1e-30 | -0.29 | 0.30 | 0.10 | FALSE |
22 | GTEx | Brain Cerebellum | DNA2 | 0.45 | 0.47 | lasso | 3 | 0.47 | 1.0e-15 | -10.5 | 11.4 | 6.6e-30 | 0.31 | 1.00 | 0.00 | FALSE |
23 | GTEx | Brain Cerebellum | STOX1 | 0.22 | 0.04 | lasso | 11 | 0.06 | 6.4e-03 | -6.7 | -10.9 | 7.2e-28 | 0.00 | 0.06 | 0.78 | FALSE |
24 | GTEx | Brain Frontal Cortex BA9 | PBLD | 0.15 | 0.00 | lasso | 3 | 0.01 | 1.6e-01 | -11.4 | -11.7 | 1.7e-31 | -0.43 | 0.28 | 0.17 | FALSE |
25 | GTEx | Brain Hippocampus | PBLD | 0.19 | 0.01 | enet | 21 | 0.07 | 1.1e-02 | -11.4 | -7.8 | 7.8e-15 | -0.21 | 0.10 | 0.06 | FALSE |
26 | GTEx | Brain Hypothalamus | SLC25A16 | 0.20 | 0.19 | lasso | 5 | 0.14 | 3.6e-04 | -12.0 | -12.7 | 6.4e-37 | -0.36 | 0.11 | 0.29 | FALSE |
27 | GTEx | Brain Nucleus accumbens basal ganglia | PBLD | 0.20 | 0.13 | lasso | 2 | 0.09 | 1.7e-03 | -11.4 | -11.4 | 2.5e-30 | -0.39 | 0.12 | 0.49 | FALSE |
28 | GTEx | Brain Putamen basal ganglia | DNA2 | 0.34 | 0.31 | lasso | 5 | 0.25 | 1.4e-06 | -10.7 | 10.7 | 8.4e-27 | 0.27 | 0.78 | 0.01 | FALSE |
29 | GTEx | Breast Mammary Tissue | DNA2 | 0.30 | 0.26 | lasso | 7 | 0.26 | 8.2e-14 | -10.7 | 11.6 | 2.5e-31 | 0.30 | 1.00 | 0.00 | FALSE |
30 | GTEx | Breast Mammary Tissue | HERC4 | 0.07 | 0.00 | lasso | 3 | 0.02 | 3.6e-02 | -11.9 | -11.2 | 3.4e-29 | -0.32 | 0.13 | 0.04 | FALSE |
31 | GTEx | Breast Mammary Tissue (Male) | DNA2 | 0.32 | 0.14 | lasso | 5 | 0.07 | 1.2e-02 | -10.7 | 11.6 | 3.2e-31 | 0.30 | 0.34 | 0.05 | FALSE |
32 | GTEx | Breast Mammary Tissue (Female) | DNA2 | 0.15 | 0.10 | lasso | 3 | 0.07 | 3.6e-03 | -10.7 | 11.9 | 8.7e-33 | 0.30 | 0.19 | 0.05 | FALSE |
33 | GTEx | Breast Mammary Tissue (Female) | HERC4 | 0.11 | -0.01 | enet | 20 | 0.01 | 1.2e-01 | -10.5 | -6.8 | 7.6e-12 | -0.22 | 0.05 | 0.05 | FALSE |
34 | GTEx | Cells EBV-transformed lymphocytes | DNA2 | 0.32 | 0.14 | lasso | 2 | 0.10 | 2.9e-04 | -12.0 | 12.0 | 5.3e-33 | 0.32 | 0.46 | 0.03 | FALSE |
35 | GTEx | Cells EBV-transformed lymphocytes | STOX1 | 0.37 | 0.35 | lasso | 7 | 0.38 | 3.4e-13 | -6.7 | -7.2 | 5.7e-13 | 0.09 | 1.00 | 0.00 | FALSE |
36 | GTEx | Cells Transformed fibroblasts | PBLD | 0.11 | 0.03 | enet | 15 | 0.04 | 6.4e-04 | -11.4 | -5.8 | 5.9e-09 | -0.22 | 0.26 | 0.03 | FALSE |
37 | GTEx | Cells Transformed fibroblasts | SLC25A16 | 0.10 | 0.02 | enet | 25 | 0.01 | 2.5e-02 | -9.9 | -9.3 | 1.5e-20 | -0.10 | 0.86 | 0.00 | FALSE |
38 | GTEx | Cells Transformed fibroblasts | DNA2 | 0.16 | 0.09 | lasso | 8 | 0.14 | 7.6e-11 | -9.9 | 12.0 | 2.2e-33 | 0.31 | 1.00 | 0.00 | FALSE |
39 | GTEx | Cells Transformed fibroblasts | KIAA1279 | 0.11 | 0.08 | enet | 17 | 0.07 | 6.0e-06 | 8.5 | -6.3 | 2.3e-10 | -0.06 | 0.44 | 0.30 | FALSE |
40 | GTEx | Cells Transformed fibroblasts | RUFY2 | 0.12 | 0.14 | enet | 20 | 0.14 | 2.1e-10 | -9.9 | -10.1 | 7.1e-24 | -0.30 | 1.00 | 0.00 | FALSE |
41 | GTEx | Colon Sigmoid | STOX1 | 0.21 | 0.12 | lasso | 7 | 0.10 | 1.8e-04 | -12.5 | -11.4 | 3.4e-30 | 0.02 | 0.06 | 0.91 | FALSE |
42 | GTEx | Colon Transverse | HNRNPH3 | 0.23 | 0.00 | enet | 58 | 0.06 | 8.9e-04 | -9.3 | -7.1 | 1.6e-12 | 0.04 | 0.12 | 0.04 | FALSE |
43 | GTEx | Colon Transverse | DNA2 | 0.20 | 0.17 | lasso | 4 | 0.14 | 2.5e-07 | -12.2 | 12.2 | 5.4e-34 | 0.31 | 0.99 | 0.00 | FALSE |
44 | GTEx | Colon Transverse | STOX1 | 0.17 | 0.18 | enet | 22 | 0.20 | 5.6e-10 | -6.7 | -9.7 | 2.6e-22 | 0.02 | 0.14 | 0.86 | FALSE |
45 | GTEx | Esophagus Gastroesophageal Junction | DNA2 | 0.21 | 0.16 | enet | 28 | 0.14 | 9.4e-06 | -10.5 | 9.8 | 1.7e-22 | 0.33 | 0.35 | 0.07 | FALSE |
46 | GTEx | Esophagus Mucosa | SLC25A16 | 0.10 | 0.02 | enet | 15 | 0.04 | 1.3e-03 | -10.5 | -6.3 | 3.0e-10 | -0.21 | 0.92 | 0.01 | FALSE |
47 | GTEx | Esophagus Mucosa | DNA2 | 0.32 | 0.12 | lasso | 4 | 0.17 | 2.1e-11 | -12.0 | 11.0 | 5.8e-28 | 0.30 | 1.00 | 0.00 | FALSE |
48 | GTEx | Esophagus Mucosa | STOX1 | 0.22 | 0.23 | lasso | 10 | 0.23 | 3.6e-15 | -6.7 | -8.0 | 8.8e-16 | 0.08 | 1.00 | 0.00 | FALSE |
49 | GTEx | Esophagus Muscularis | PBLD | 0.07 | 0.03 | lasso | 7 | 0.02 | 1.5e-02 | -11.4 | -11.4 | 5.4e-30 | -0.40 | 0.65 | 0.09 | FALSE |
50 | GTEx | Esophagus Muscularis | SLC25A16 | 0.10 | 0.07 | lasso | 4 | 0.06 | 1.7e-04 | -10.5 | -10.6 | 3.8e-26 | -0.27 | 0.75 | 0.01 | FALSE |
51 | GTEx | Esophagus Muscularis | DNA2 | 0.35 | 0.24 | enet | 10 | 0.33 | 9.3e-21 | -12.2 | 12.0 | 2.0e-33 | 0.31 | 1.00 | 0.00 | FALSE |
52 | GTEx | Esophagus Muscularis | STOX1 | 0.15 | 0.07 | lasso | 5 | 0.04 | 3.2e-03 | -8.4 | -10.4 | 3.1e-25 | -0.01 | 0.12 | 0.81 | FALSE |
53 | GTEx | Esophagus Muscularis | RUFY2 | 0.06 | 0.02 | lasso | 6 | 0.02 | 2.0e-02 | -9.7 | -11.6 | 4.4e-31 | -0.43 | 0.18 | 0.04 | FALSE |
54 | GTEx | Heart Atrial Appendage | PBLD | 0.08 | 0.02 | lasso | 2 | 0.02 | 6.1e-02 | -12.0 | -14.6 | 2.1e-48 | -0.47 | 0.06 | 0.47 | FALSE |
55 | GTEx | Heart Atrial Appendage | DNA2 | 0.28 | 0.15 | enet | 26 | 0.22 | 2.2e-10 | -12.0 | 10.1 | 4.3e-24 | 0.28 | 0.99 | 0.00 | FALSE |
56 | GTEx | Heart Left Ventricle | DNA2 | 0.10 | 0.12 | lasso | 6 | 0.11 | 3.0e-06 | -10.5 | 11.4 | 6.1e-30 | 0.29 | 0.91 | 0.02 | FALSE |
57 | GTEx | Liver | DNA2 | 0.26 | 0.15 | lasso | 7 | 0.19 | 6.5e-06 | -10.6 | 11.2 | 5.7e-29 | 0.27 | 0.29 | 0.10 | FALSE |
58 | GTEx | Liver | STOX1 | 0.19 | 0.24 | lasso | 3 | 0.16 | 3.9e-05 | -8.4 | -9.5 | 1.6e-21 | 0.04 | 0.41 | 0.43 | TRUE |
59 | GTEx | Lung | DNA2 | 0.22 | 0.17 | enet | 12 | 0.24 | 3.9e-18 | -12.2 | 12.3 | 8.5e-35 | 0.30 | 1.00 | 0.00 | FALSE |
60 | GTEx | Lung | STOX1 | 0.07 | 0.06 | lasso | 5 | 0.05 | 9.8e-05 | -6.7 | -7.4 | 1.2e-13 | 0.09 | 0.68 | 0.22 | FALSE |
61 | GTEx | Muscle Skeletal | PBLD | 0.11 | 0.10 | lasso | 12 | 0.12 | 5.1e-12 | -10.2 | -12.0 | 2.9e-33 | -0.48 | 1.00 | 0.00 | FALSE |
62 | GTEx | Muscle Skeletal | DNA2 | 0.18 | 0.16 | lasso | 4 | 0.19 | 1.7e-18 | -10.5 | 11.5 | 2.1e-30 | 0.30 | 1.00 | 0.00 | FALSE |
63 | GTEx | Muscle Skeletal | STOX1 | 0.17 | 0.21 | lasso | 11 | 0.22 | 1.6e-21 | -12.2 | -11.5 | 1.7e-30 | 0.03 | 0.08 | 0.92 | FALSE |
64 | GTEx | Muscle Skeletal | KIAA1279 | 0.36 | 0.39 | lasso | 3 | 0.39 | 1.0e-40 | 8.3 | -8.3 | 1.1e-16 | -0.12 | 1.00 | 0.00 | FALSE |
65 | GTEx | Muscle Skeletal | RUFY2 | 0.08 | 0.05 | enet | 10 | 0.03 | 2.5e-04 | -9.9 | -10.1 | 4.2e-24 | -0.29 | 0.88 | 0.03 | FALSE |
66 | GTEx | Nerve Tibial | DNA2 | 0.37 | 0.31 | enet | 14 | 0.31 | 4.6e-22 | -10.5 | 10.7 | 6.3e-27 | 0.30 | 1.00 | 0.00 | FALSE |
67 | GTEx | Nerve Tibial | STOX1 | 0.16 | 0.11 | lasso | 6 | 0.11 | 3.6e-08 | -8.4 | -8.5 | 1.5e-17 | 0.02 | 0.90 | 0.09 | TRUE |
68 | GTEx | Ovary | DNA2 | 0.15 | 0.12 | lasso | 3 | 0.06 | 1.7e-02 | -11.5 | 11.9 | 1.8e-32 | 0.33 | 0.12 | 0.09 | FALSE |
69 | GTEx | Pancreas | PBLD | 0.18 | 0.17 | enet | 6 | 0.16 | 3.1e-07 | -11.4 | -11.6 | 5.2e-31 | -0.32 | 0.74 | 0.03 | FALSE |
70 | GTEx | Pancreas | DNA2 | 0.12 | 0.06 | enet | 9 | 0.08 | 4.1e-04 | -10.7 | 12.7 | 3.3e-37 | 0.30 | 0.51 | 0.03 | FALSE |
71 | GTEx | Pancreas | STOX1 | 0.38 | 0.37 | lasso | 4 | 0.42 | 1.7e-19 | -8.4 | -9.1 | 8.3e-20 | 0.07 | 1.00 | 0.00 | FALSE |
72 | GTEx | Pituitary | DNA2 | 0.22 | 0.07 | enet | 8 | 0.10 | 1.8e-03 | -10.7 | 11.2 | 6.0e-29 | 0.29 | 0.27 | 0.04 | FALSE |
73 | GTEx | Skin Not Sun Exposed Suprapubic | DNA2 | 0.29 | 0.16 | lasso | 14 | 0.22 | 2.4e-12 | -10.5 | 11.8 | 2.4e-32 | 0.33 | 1.00 | 0.00 | FALSE |
74 | GTEx | Skin Sun Exposed Lower leg | DNA2 | 0.23 | 0.15 | lasso | 6 | 0.14 | 1.3e-11 | -10.6 | 11.6 | 2.9e-31 | 0.33 | 1.00 | 0.00 | FALSE |
75 | GTEx | Skin Sun Exposed Lower leg | STOX1 | 0.08 | 0.06 | lasso | 2 | 0.04 | 1.4e-04 | -8.4 | -10.7 | 1.6e-26 | 0.04 | 0.40 | 0.58 | FALSE |
76 | GTEx | Skin Sun Exposed Lower leg | RUFY2 | 0.05 | 0.06 | lasso | 6 | 0.04 | 2.5e-04 | -9.9 | 10.6 | 3.0e-26 | 0.31 | 0.81 | 0.08 | FALSE |
77 | GTEx | Spleen | DNA2 | 0.35 | 0.19 | lasso | 8 | 0.15 | 1.3e-04 | -12.2 | 11.5 | 1.0e-30 | 0.29 | 0.18 | 0.11 | FALSE |
78 | GTEx | Spleen | STOX1 | 0.30 | 0.39 | lasso | 3 | 0.33 | 3.3e-09 | -6.7 | -7.2 | 6.3e-13 | 0.10 | 0.23 | 0.76 | FALSE |
79 | GTEx | Stomach | DNA2 | 0.31 | 0.13 | lasso | 11 | 0.19 | 2.3e-09 | -10.5 | 12.0 | 2.3e-33 | 0.31 | 1.00 | 0.00 | FALSE |
80 | GTEx | Testis | SLC25A16 | 0.24 | 0.23 | lasso | 4 | 0.19 | 7.3e-09 | -10.5 | -11.0 | 3.0e-28 | -0.29 | 1.00 | 0.00 | FALSE |
81 | GTEx | Testis | STOX1 | 0.12 | 0.04 | lasso | 4 | 0.05 | 3.5e-03 | -8.3 | -7.8 | 4.4e-15 | 0.04 | 0.07 | 0.50 | FALSE |
82 | GTEx | Thyroid | DNA2 | 0.18 | 0.19 | lasso | 5 | 0.19 | 2.9e-14 | -10.5 | 11.2 | 2.8e-29 | 0.29 | 1.00 | 0.00 | FALSE |
83 | GTEx | Thyroid | STOX1 | 0.11 | 0.13 | lasso | 3 | 0.08 | 4.8e-07 | -6.7 | -6.5 | 6.5e-11 | 0.10 | 0.98 | 0.02 | FALSE |
84 | GTEx | Whole Blood | STOX1 | 0.13 | 0.19 | lasso | 6 | 0.18 | 1.9e-16 | -6.7 | -7.2 | 8.3e-13 | 0.09 | 1.00 | 0.00 | FALSE |
85 | METSIM | Adipose | DNA2 | 0.18 | 0.21 | lasso | 11 | 0.21 | 4.0e-31 | -10.6 | 10.6 | 2.4e-26 | 0.30 | 1.00 | 0.00 | FALSE |
86 | METSIM | Adipose | PBLD | 0.16 | 0.15 | lasso | 12 | 0.14 | 6.4e-21 | -11.4 | -12.4 | 1.9e-35 | -0.41 | 1.00 | 0.00 | FALSE |
87 | METSIM | Adipose | RUFY2 | 0.09 | 0.09 | lasso | 15 | 0.08 | 6.2e-12 | -10.0 | -10.6 | 3.7e-26 | -0.30 | 1.00 | 0.00 | FALSE |
88 | METSIM | Adipose | STOX1 | 0.04 | 0.06 | lasso | 8 | 0.05 | 1.3e-08 | -8.4 | -8.5 | 1.4e-17 | 0.04 | 1.00 | 0.00 | FALSE |
89 | NTR | Blood | KIAA1279 | 0.02 | 0.01 | enet | 20 | 0.01 | 9.2e-05 | -3.1 | -8.8 | 1.6e-18 | -0.10 | 0.45 | 0.02 | TRUE |
90 | NTR | Blood | SLC25A16 | 0.03 | 0.02 | enet | 16 | 0.03 | 1.7e-09 | -12.2 | -13.5 | 2.1e-41 | -0.33 | 1.00 | 0.00 | FALSE |
91 | ROSMAP | Brain Pre-frontal Cortex | PBLD | 0.04 | 0.01 | bslmm | 388 | 0.02 | 1.3e-03 | -9.6 | -13.8 | 2.8e-43 | -0.55 | 0.76 | 0.20 | FALSE |
92 | ROSMAP | Brain Pre-frontal Cortex | SLC25A16 | 0.17 | 0.11 | lasso | 6 | 0.15 | 2.9e-19 | -10.7 | -12.3 | 5.4e-35 | -0.33 | 1.00 | 0.00 | FALSE |
93 | ROSMAP | Brain Pre-frontal Cortex | DNA2 | 0.09 | 0.09 | lasso | 1 | 0.09 | 1.2e-11 | -10.5 | 10.5 | 5.7e-26 | 0.27 | 1.00 | 0.00 | FALSE |
94 | ROSMAP | Brain Pre-frontal Cortex | KIAA1279 | 0.10 | 0.11 | enet | 30 | 0.10 | 5.2e-13 | 8.3 | -7.9 | 3.1e-15 | -0.08 | 1.00 | 0.00 | FALSE |
95 | ROSMAP | Brain Pre-frontal Cortex | RUFY2 | 0.05 | 0.04 | enet | 18 | 0.04 | 6.9e-06 | -10.0 | -10.4 | 2.1e-25 | -0.31 | 1.00 | 0.00 | FALSE |
96 | YFS | Blood | EIF4EBP2 | 0.22 | 0.21 | lasso | 14 | 0.27 | 3.2e-88 | -5.3 | 5.8 | 5.3e-09 | 0.10 | 0.01 | 0.99 | TRUE |
97 | YFS | Blood | SLC25A16 | 0.09 | 0.13 | lasso | 3 | 0.13 | 6.8e-39 | -12.2 | -12.5 | 8.6e-36 | -0.33 | 1.00 | 0.00 | FALSE |
98 | YFS | Blood | STOX1 | 0.24 | 0.16 | lasso | 7 | 0.22 | 1.8e-68 | -8.4 | -9.8 | 6.5e-23 | 0.04 | 1.00 | 0.00 | FALSE |
99 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | PBLD | 0.06 | 0.07 | lasso | 2 | 0.04 | 2.3e-04 | -13.3 | -13.4 | 1.1e-40 | -0.44 | 0.00 | 0.99 | FALSE |
100 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | SLC25A16 | 0.03 | 0.02 | blup | 42 | 0.02 | 6.7e-03 | -12.0 | -11.0 | 6.5e-28 | -0.29 | 0.13 | 0.03 | FALSE |
101 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | STOX1 | 0.12 | 0.15 | lasso | 3 | 0.15 | 1.6e-12 | -6.7 | -6.8 | 1.4e-11 | 0.10 | 1.00 | 0.00 | FALSE |
102 | The Cancer Genome Atlas | Breast Invasive Carcinoma | DNA2 | 0.11 | 0.02 | blup | 43 | 0.03 | 6.0e-07 | -12.0 | 8.6 | 6.2e-18 | 0.23 | 0.04 | 0.96 | FALSE |
103 | The Cancer Genome Atlas | Breast Invasive Carcinoma | PBLD | 0.03 | 0.01 | enet | 6 | 0.02 | 2.9e-05 | -11.4 | -11.3 | 7.9e-30 | -0.40 | 0.66 | 0.34 | FALSE |
104 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SLC25A16 | 0.01 | 0.02 | lasso | 2 | 0.01 | 5.5e-04 | -12.0 | -12.1 | 1.3e-33 | -0.32 | 0.36 | 0.02 | FALSE |
105 | The Cancer Genome Atlas | Breast Invasive Carcinoma | STOX1 | 0.05 | 0.04 | lasso | 6 | 0.05 | 1.0e-09 | -10.5 | -11.2 | 4.3e-29 | 0.02 | 0.00 | 1.00 | FALSE |
106 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | DNA2 | 0.08 | 0.09 | lasso | 1 | 0.06 | 7.3e-04 | -12.0 | 12.0 | 4.8e-33 | 0.36 | 0.02 | 0.86 | FALSE |
107 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | STOX1 | 0.18 | 0.08 | blup | 51 | 0.10 | 9.1e-06 | -6.7 | -8.9 | 4.9e-19 | 0.08 | 0.01 | 0.98 | FALSE |
108 | The Cancer Genome Atlas | Colon Adenocarcinoma | DNA2 | 0.14 | 0.02 | blup | 43 | 0.07 | 1.0e-04 | -10.0 | 5.3 | 1.1e-07 | 0.22 | 0.02 | 0.84 | FALSE |
109 | The Cancer Genome Atlas | Colon Adenocarcinoma | STOX1 | 0.20 | 0.14 | lasso | 2 | 0.13 | 6.8e-08 | -8.4 | -9.5 | 2.8e-21 | 0.02 | 0.26 | 0.73 | FALSE |
110 | The Cancer Genome Atlas | Esophageal Carcinoma | STOX1 | 0.27 | 0.23 | blup | 51 | 0.23 | 9.1e-08 | -8.4 | -11.0 | 3.0e-28 | 0.03 | 0.14 | 0.81 | FALSE |
111 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ATOH7 | 0.05 | 0.01 | lasso | 3 | 0.02 | 2.6e-03 | -13.5 | 11.6 | 3.7e-31 | 0.45 | 0.04 | 0.06 | FALSE |
112 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | PBLD | 0.03 | 0.03 | lasso | 9 | 0.02 | 1.6e-03 | -12.8 | -12.9 | 8.4e-38 | -0.53 | 0.02 | 0.82 | FALSE |
113 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | STOX1 | 0.19 | 0.19 | lasso | 5 | 0.21 | 9.6e-23 | -6.7 | -9.2 | 3.7e-20 | 0.05 | 1.00 | 0.00 | FALSE |
114 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ATOH7 | 0.16 | 0.06 | enet | 15 | 0.09 | 3.7e-10 | -9.6 | 13.0 | 9.3e-39 | 0.45 | 0.99 | 0.00 | FALSE |
115 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | DNA2 | 0.11 | 0.09 | lasso | 8 | 0.09 | 5.7e-10 | -10.7 | 11.1 | 7.7e-29 | 0.28 | 0.16 | 0.84 | FALSE |
116 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MYPN | 0.05 | 0.06 | lasso | 5 | 0.05 | 6.4e-06 | -6.6 | -6.7 | 2.9e-11 | -0.59 | 0.48 | 0.51 | FALSE |
117 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PBLD | 0.10 | 0.03 | lasso | 3 | 0.04 | 2.2e-05 | -13.3 | -13.2 | 1.3e-39 | -0.44 | 0.01 | 0.99 | FALSE |
118 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | STOX1 | 0.23 | 0.27 | lasso | 8 | 0.27 | 7.3e-30 | -8.4 | -8.1 | 8.2e-16 | 0.06 | 1.00 | 0.00 | FALSE |
119 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | ATOH7 | 0.08 | 0.04 | enet | 19 | 0.06 | 3.1e-04 | -9.6 | 14.8 | 9.3e-50 | 0.67 | 0.12 | 0.54 | TRUE |
120 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | DNA2 | 0.05 | 0.00 | blup | 43 | 0.00 | 3.0e-01 | -12.0 | 12.8 | 2.1e-37 | 0.35 | 0.02 | 0.73 | FALSE |
121 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | PBLD | 0.06 | 0.06 | enet | 6 | 0.06 | 2.5e-04 | -11.7 | -11.8 | 5.9e-32 | -0.39 | 0.25 | 0.24 | FALSE |
122 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | STOX1 | 0.28 | 0.29 | enet | 16 | 0.30 | 1.2e-17 | -8.4 | -9.1 | 1.3e-19 | 0.03 | 1.00 | 0.00 | FALSE |
123 | The Cancer Genome Atlas | Brain Lower Grade Glioma | DNA2 | 0.17 | 0.16 | enet | 3 | 0.16 | 8.7e-18 | -10.5 | 10.5 | 9.4e-26 | 0.26 | 0.99 | 0.01 | FALSE |
124 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PBLD | 0.12 | 0.18 | enet | 10 | 0.18 | 6.7e-20 | -11.4 | -12.6 | 3.9e-36 | -0.41 | 0.15 | 0.85 | FALSE |
125 | The Cancer Genome Atlas | Brain Lower Grade Glioma | SLC25A16 | 0.05 | 0.01 | blup | 42 | 0.02 | 2.9e-03 | -12.0 | -12.6 | 1.5e-36 | -0.23 | 0.35 | 0.07 | FALSE |
126 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | DNA2 | 0.08 | 0.05 | blup | 43 | 0.09 | 7.5e-05 | -9.9 | 11.0 | 4.8e-28 | 0.33 | 0.05 | 0.81 | FALSE |
127 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | STOX1 | 0.21 | 0.18 | blup | 51 | 0.25 | 6.6e-12 | -8.4 | -11.0 | 3.7e-28 | 0.03 | 0.41 | 0.59 | FALSE |
128 | The Cancer Genome Atlas | Lung Adenocarcinoma | SLC25A16 | 0.03 | 0.03 | lasso | 2 | 0.02 | 1.4e-03 | -12.0 | -11.3 | 2.2e-29 | -0.28 | 0.12 | 0.04 | FALSE |
129 | The Cancer Genome Atlas | Lung Adenocarcinoma | STOX1 | 0.13 | 0.10 | lasso | 3 | 0.09 | 1.0e-10 | -8.4 | -8.0 | 9.0e-16 | 0.04 | 0.99 | 0.01 | FALSE |
130 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | PBLD | 0.02 | 0.01 | blup | 76 | 0.01 | 1.5e-02 | -11.6 | -11.7 | 8.0e-32 | -0.45 | 0.15 | 0.19 | FALSE |
131 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | SLC25A16 | 0.02 | 0.02 | enet | 8 | 0.02 | 7.7e-04 | -12.0 | -12.5 | 9.1e-36 | -0.36 | 0.09 | 0.03 | FALSE |
132 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | STOX1 | 0.06 | 0.05 | lasso | 2 | 0.05 | 1.5e-06 | -8.4 | -8.3 | 9.6e-17 | 0.04 | 0.66 | 0.28 | FALSE |
133 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | STOX1 | 0.11 | 0.09 | blup | 51 | 0.10 | 2.0e-07 | -8.4 | -9.2 | 2.2e-20 | 0.04 | 0.26 | 0.70 | FALSE |
134 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | ATOH7 | 0.10 | -0.01 | blup | 59 | 0.04 | 1.1e-02 | -9.6 | 12.7 | 1.1e-36 | 0.63 | 0.04 | 0.16 | FALSE |
135 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | STOX1 | 0.49 | 0.35 | blup | 51 | 0.40 | 9.6e-18 | -8.4 | -8.9 | 5.7e-19 | 0.05 | 0.91 | 0.09 | FALSE |
136 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | DNA2 | 0.23 | 0.03 | enet | 8 | 0.07 | 1.3e-03 | -12.0 | 9.9 | 3.4e-23 | 0.23 | 0.03 | 0.88 | FALSE |
137 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | STOX1 | 0.27 | 0.13 | blup | 51 | 0.26 | 1.3e-10 | -6.7 | -8.9 | 4.9e-19 | 0.03 | 0.01 | 0.99 | FALSE |
138 | The Cancer Genome Atlas | Prostate Adenocarcinoma | ATOH7 | 0.02 | 0.01 | lasso | 3 | 0.00 | 1.3e-01 | -10.2 | 10.6 | 2.8e-26 | 0.47 | 0.10 | 0.03 | FALSE |
139 | The Cancer Genome Atlas | Prostate Adenocarcinoma | DNA2 | 0.10 | 0.12 | lasso | 1 | 0.12 | 2.1e-12 | -10.5 | 10.5 | 5.7e-26 | 0.27 | 0.91 | 0.09 | FALSE |
140 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PBLD | 0.03 | 0.01 | blup | 76 | 0.01 | 1.3e-02 | -11.4 | -12.7 | 8.2e-37 | -0.48 | 0.05 | 0.44 | FALSE |
141 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SLC25A16 | 0.05 | 0.02 | blup | 42 | 0.05 | 5.5e-06 | -5.5 | -10.9 | 7.2e-28 | -0.20 | 0.79 | 0.01 | FALSE |
142 | The Cancer Genome Atlas | Prostate Adenocarcinoma | STOX1 | 0.25 | 0.21 | enet | 10 | 0.21 | 6.3e-22 | -8.4 | -9.0 | 2.2e-19 | 0.04 | 1.00 | 0.00 | FALSE |
143 | The Cancer Genome Atlas | Rectum Adenocarcinoma | STOX1 | 0.23 | 0.17 | blup | 51 | 0.21 | 1.2e-05 | -10.1 | -11.8 | 4.0e-32 | -0.03 | 0.01 | 0.90 | TRUE |
144 | The Cancer Genome Atlas | Soft Tissue Sarcoma | SLC25A16 | 0.07 | 0.03 | blup | 42 | 0.02 | 1.7e-02 | -12.0 | -13.7 | 1.3e-42 | -0.34 | 0.14 | 0.04 | FALSE |
145 | The Cancer Genome Atlas | Soft Tissue Sarcoma | STOX1 | 0.19 | 0.02 | enet | 13 | 0.12 | 1.8e-07 | -7.4 | -9.1 | 1.2e-19 | -0.06 | 0.63 | 0.25 | FALSE |
146 | The Cancer Genome Atlas | Stomach Adenocarcinoma | ATOH7 | 0.05 | 0.05 | lasso | 2 | 0.05 | 8.6e-05 | -11.0 | 10.8 | 2.7e-27 | 0.60 | 0.11 | 0.49 | FALSE |
147 | The Cancer Genome Atlas | Stomach Adenocarcinoma | STOX1 | 0.23 | 0.20 | lasso | 4 | 0.19 | 4.8e-14 | -8.4 | -7.8 | 5.7e-15 | 0.07 | 0.99 | 0.01 | FALSE |
148 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | DNA2 | 0.14 | 0.07 | blup | 43 | 0.08 | 8.6e-04 | -11.5 | -12.9 | 6.3e-38 | -0.32 | 0.02 | 0.83 | FALSE |
149 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | STOX1 | 0.17 | 0.10 | enet | 9 | 0.14 | 1.2e-05 | -6.7 | -7.9 | 3.0e-15 | -0.03 | 0.10 | 0.70 | FALSE |
150 | The Cancer Genome Atlas | Thyroid Carcinoma | DNA2 | 0.05 | 0.03 | enet | 5 | 0.03 | 2.9e-04 | -10.7 | 9.7 | 3.4e-22 | 0.25 | 0.03 | 0.36 | FALSE |
151 | The Cancer Genome Atlas | Thyroid Carcinoma | PBLD | 0.06 | 0.09 | lasso | 2 | 0.09 | 1.1e-08 | -11.4 | -11.7 | 8.2e-32 | -0.38 | 0.49 | 0.51 | FALSE |
152 | The Cancer Genome Atlas | Thyroid Carcinoma | SLC25A16 | 0.05 | 0.05 | lasso | 3 | 0.04 | 3.8e-05 | -12.2 | -12.3 | 6.3e-35 | -0.31 | 0.32 | 0.04 | FALSE |
153 | The Cancer Genome Atlas | Thyroid Carcinoma | STOX1 | 0.19 | 0.12 | lasso | 6 | 0.11 | 5.0e-11 | -6.7 | -9.1 | 8.0e-20 | 0.08 | 0.19 | 0.81 | FALSE |