Best TWAS P=2.26e-32 · Best GWAS P=1.41e-32 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | PPP2R1B | 0.14 | 0.18 | enet | 19 | 0.19 | 8.3e-23 | 7.7 | 9.5 | 2.2e-21 | -0.68 | 1.00 | 0.00 | FALSE |
2 | GTEx | Adipose Subcutaneous | PPP2R1B | 0.11 | 0.05 | enet | 16 | 0.08 | 4.4e-07 | 7.3 | 9.6 | 7.2e-22 | -0.59 | 0.27 | 0.72 | FALSE |
3 | GTEx | Adipose Visceral Omentum | PPP2R1B | 0.07 | 0.00 | lasso | 9 | 0.00 | 2.2e-01 | 8.3 | 10.8 | 2.5e-27 | -0.73 | 0.04 | 0.90 | FALSE |
4 | GTEx | Artery Aorta | C11orf1 | 0.10 | 0.00 | enet | 10 | 0.04 | 1.9e-03 | -11.5 | -9.8 | 1.3e-22 | 0.53 | 0.06 | 0.64 | FALSE |
5 | GTEx | Artery Tibial | PPP2R1B | 0.14 | 0.10 | lasso | 3 | 0.11 | 4.9e-09 | 7.3 | 8.6 | 9.7e-18 | -0.49 | 0.99 | 0.00 | FALSE |
6 | GTEx | Brain Caudate basal ganglia | PPP2R1B | 0.27 | 0.14 | lasso | 3 | 0.15 | 4.8e-05 | 8.3 | 10.3 | 6.9e-25 | -0.75 | 0.02 | 0.94 | FALSE |
7 | GTEx | Brain Cerebellum | PPP2R1B | 0.14 | 0.14 | lasso | 4 | 0.12 | 1.6e-04 | 8.3 | 6.4 | 1.5e-10 | -0.39 | 0.18 | 0.08 | FALSE |
8 | GTEx | Brain Cortex | PPP2R1B | 0.16 | 0.07 | lasso | 2 | 0.09 | 1.8e-03 | 8.3 | 8.4 | 6.2e-17 | -0.53 | 0.10 | 0.45 | TRUE |
9 | GTEx | Brain Frontal Cortex BA9 | PPP2R1B | 0.27 | 0.07 | lasso | 2 | 0.06 | 1.3e-02 | 8.3 | 8.8 | 1.5e-18 | -0.54 | 0.06 | 0.24 | FALSE |
10 | GTEx | Brain Frontal Cortex BA9 | PIH1D2 | 0.30 | 0.00 | enet | 32 | 0.08 | 2.9e-03 | 2.3 | 5.6 | 2.4e-08 | -0.28 | 0.06 | 0.26 | TRUE |
11 | GTEx | Brain Nucleus accumbens basal ganglia | PPP2R1B | 0.36 | 0.20 | lasso | 3 | 0.17 | 2.5e-05 | 8.3 | 8.4 | 6.2e-17 | -0.56 | 0.08 | 0.80 | FALSE |
12 | GTEx | Brain Putamen basal ganglia | PPP2R1B | 0.26 | 0.18 | lasso | 2 | 0.14 | 3.5e-04 | 8.3 | 8.3 | 1.0e-16 | -0.57 | 0.09 | 0.73 | FALSE |
13 | GTEx | Cells Transformed fibroblasts | PPP2R1B | 0.10 | 0.07 | enet | 14 | 0.12 | 5.5e-09 | -9.1 | 10.9 | 6.8e-28 | -0.87 | 0.02 | 0.98 | FALSE |
14 | GTEx | Cells Transformed fibroblasts | DLAT | 0.13 | 0.09 | lasso | 2 | 0.08 | 8.0e-07 | -11.7 | 10.9 | 1.2e-27 | -0.84 | 0.04 | 0.96 | TRUE |
15 | GTEx | Esophagus Mucosa | PPP2R1B | 0.09 | 0.09 | lasso | 1 | 0.07 | 1.4e-05 | 8.2 | 8.2 | 1.9e-16 | -0.56 | 0.65 | 0.14 | FALSE |
16 | GTEx | Esophagus Muscularis | PPP2R1B | 0.15 | 0.04 | enet | 20 | 0.04 | 2.9e-03 | 8.3 | 6.8 | 7.4e-12 | -0.50 | 0.70 | 0.25 | FALSE |
17 | GTEx | Heart Atrial Appendage | CRYAB | 0.13 | 0.00 | lasso | 3 | -0.01 | 7.3e-01 | 1.8 | 8.6 | 6.5e-18 | -0.59 | 0.04 | 0.42 | FALSE |
18 | GTEx | Lung | PPP2R1B | 0.12 | 0.10 | lasso | 4 | 0.10 | 5.6e-08 | 8.2 | 8.0 | 8.8e-16 | -0.57 | 0.68 | 0.29 | TRUE |
19 | GTEx | Muscle Skeletal | DLAT | 0.10 | 0.07 | lasso | 4 | 0.06 | 3.9e-06 | -11.6 | 11.7 | 1.4e-31 | -0.85 | 0.04 | 0.96 | FALSE |
20 | GTEx | Nerve Tibial | PPP2R1B | 0.20 | 0.00 | enet | 23 | 0.03 | 5.9e-03 | 8.2 | 6.9 | 4.1e-12 | -0.42 | 0.27 | 0.16 | FALSE |
21 | GTEx | Prostate | PPP2R1B | 0.18 | 0.10 | lasso | 4 | 0.02 | 8.2e-02 | 8.4 | 9.7 | 3.7e-22 | -0.70 | 0.04 | 0.66 | FALSE |
22 | GTEx | Skin Sun Exposed Lower leg | DLAT | 0.05 | 0.03 | lasso | 3 | 0.03 | 1.3e-03 | -11.7 | -11.7 | 2.0e-31 | 0.88 | 0.05 | 0.93 | FALSE |
23 | GTEx | Thyroid | PPP2R1B | 0.32 | 0.26 | lasso | 9 | 0.26 | 2.6e-20 | 8.3 | 10.4 | 2.7e-25 | -0.70 | 1.00 | 0.00 | FALSE |
24 | METSIM | Adipose | BCO2 | 0.17 | 0.06 | bslmm | 390 | 0.10 | 5.6e-15 | 2.0 | -6.6 | 4.7e-11 | 0.30 | 1.00 | 0.00 | FALSE |
25 | METSIM | Adipose | CRYAB | 0.03 | 0.03 | blup | 323 | 0.03 | 3.2e-05 | -11.5 | -11.8 | 2.3e-32 | 0.86 | 0.06 | 0.94 | TRUE |
26 | METSIM | Adipose | DIXDC1 | 0.04 | 0.01 | bslmm | 360 | 0.02 | 1.4e-03 | 8.3 | -10.2 | 2.0e-24 | 0.71 | 0.09 | 0.82 | FALSE |
27 | METSIM | Adipose | PPP2R1B | 0.20 | 0.10 | enet | 26 | 0.16 | 1.9e-22 | 8.4 | 8.3 | 1.1e-16 | -0.63 | 0.95 | 0.05 | TRUE |
28 | NTR | Blood | POU2AF1 | 0.07 | 0.05 | bslmm | 434 | 0.05 | 3.2e-16 | -3.7 | 5.5 | 3.8e-08 | -0.15 | 1.00 | 0.00 | FALSE |
29 | NTR | Blood | PPP2R1B | 0.02 | 0.01 | bslmm | 374 | 0.01 | 3.2e-05 | 8.4 | 9.6 | 1.2e-21 | -0.59 | 0.25 | 0.68 | FALSE |
30 | NTR | Blood | SIK2 | 0.01 | 0.00 | enet | 9 | 0.01 | 1.3e-04 | 4.4 | 6.2 | 5.9e-10 | -0.49 | 0.06 | 0.61 | FALSE |
31 | ROSMAP | Brain Pre-frontal Cortex | ALG9 | 0.02 | 0.02 | enet | 9 | 0.02 | 1.8e-03 | -11.7 | 11.5 | 1.5e-30 | -0.92 | 0.01 | 0.98 | FALSE |
32 | ROSMAP | Brain Pre-frontal Cortex | CRYAB | 0.03 | 0.00 | blup | 242 | 0.01 | 2.3e-02 | -11.7 | -9.3 | 1.5e-20 | 0.81 | 0.01 | 0.97 | FALSE |
33 | ROSMAP | Brain Pre-frontal Cortex | PPP2R1B | 0.32 | 0.30 | lasso | 10 | 0.36 | 1.8e-48 | 7.7 | 10.0 | 1.4e-23 | -0.66 | 1.00 | 0.00 | FALSE |
34 | ROSMAP | Brain Pre-frontal Cortex | C11orf52 | 0.04 | 0.03 | lasso | 2 | 0.03 | 1.7e-04 | -11.7 | -11.7 | 1.5e-31 | 0.86 | 0.01 | 0.98 | FALSE |
35 | YFS | Blood | DIXDC1 | 0.07 | 0.03 | blup | 353 | 0.06 | 2.7e-19 | -9.8 | -9.0 | 2.2e-19 | 0.76 | 0.02 | 0.98 | FALSE |
36 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | FDXACB1 | 0.04 | 0.03 | enet | 3 | 0.04 | 3.1e-04 | -9.7 | -10.5 | 5.9e-26 | 0.80 | 0.00 | 0.88 | FALSE |
37 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | HSPB2 | 0.03 | 0.03 | lasso | 2 | 0.02 | 1.6e-03 | -9.7 | 10.2 | 1.4e-24 | -0.81 | 0.00 | 0.94 | FALSE |
38 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PPP2R1B | 0.09 | 0.07 | blup | 12 | 0.07 | 3.3e-08 | 7.7 | 6.1 | 8.9e-10 | -0.42 | 0.96 | 0.03 | FALSE |
39 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | C11orf1 | 0.09 | 0.01 | blup | 5 | 0.03 | 2.0e-02 | -9.7 | -5.5 | 3.4e-08 | 0.64 | 0.00 | 0.44 | FALSE |
40 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | ALG9 | 0.02 | 0.02 | enet | 4 | 0.02 | 4.3e-03 | -9.7 | 9.9 | 3.4e-23 | -0.89 | 0.00 | 0.87 | TRUE |
41 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | LAYN | 0.13 | 0.07 | enet | 8 | 0.07 | 9.9e-04 | 3.5 | 6.8 | 9.4e-12 | -0.33 | 0.03 | 0.34 | FALSE |
42 | The Cancer Genome Atlas | Soft Tissue Sarcoma | PPP2R1B | 0.16 | 0.06 | blup | 12 | 0.06 | 2.4e-04 | 7.7 | 8.6 | 8.3e-18 | -0.56 | 0.02 | 0.19 | FALSE |