Best TWAS P=2.23e-13 · Best GWAS P=2.64e-12 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | MAN2C1 | 0.13 | 0.17 | lasso | 5 | 0.18 | 2.5e-21 | -5.8 | -5.7 | 1.1e-08 | 0.02 | 0.82 | 0.18 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | PPCDC | 0.05 | 0.01 | blup | 271 | 0.03 | 3.2e-04 | -4.5 | -5.6 | 1.8e-08 | 0.09 | 0.08 | 0.88 | FALSE |
3 | GTEx | Adipose Subcutaneous | NEIL1 | 0.05 | 0.03 | lasso | 5 | 0.02 | 1.6e-02 | -5.8 | -5.7 | 1.1e-08 | 0.03 | 0.72 | 0.18 | FALSE |
4 | GTEx | Adipose Subcutaneous | MAN2C1 | 0.36 | 0.54 | enet | 18 | 0.54 | 2.7e-52 | -5.8 | -5.7 | 1.0e-08 | 0.01 | 0.82 | 0.18 | FALSE |
5 | GTEx | Adipose Visceral Omentum | NEIL1 | 0.09 | 0.03 | lasso | 3 | 0.05 | 2.0e-03 | -6.0 | -5.5 | 4.2e-08 | 0.01 | 0.37 | 0.16 | FALSE |
6 | GTEx | Adipose Visceral Omentum | MAN2C1 | 0.46 | 0.52 | lasso | 5 | 0.52 | 1.8e-31 | -5.8 | -5.9 | 4.0e-09 | 0.02 | 0.79 | 0.21 | FALSE |
7 | GTEx | Adrenal Gland | MAN2C1 | 0.20 | 0.24 | lasso | 6 | 0.21 | 4.3e-08 | -5.9 | -5.6 | 1.8e-08 | 0.02 | 0.75 | 0.23 | FALSE |
8 | GTEx | Adrenal Gland | SNUPN | 0.17 | 0.05 | enet | 17 | 0.11 | 1.3e-04 | 1.6 | -5.4 | 5.4e-08 | 0.05 | 0.04 | 0.39 | FALSE |
9 | GTEx | Artery Aorta | MAN2C1 | 0.48 | 0.60 | lasso | 5 | 0.59 | 7.1e-40 | -5.9 | -5.9 | 2.8e-09 | 0.02 | 0.75 | 0.25 | FALSE |
10 | GTEx | Artery Coronary | HMG20A | 0.42 | -0.01 | enet | 31 | 0.13 | 5.1e-05 | 4.9 | 6.0 | 1.6e-09 | -0.49 | 0.05 | 0.39 | FALSE |
11 | GTEx | Artery Coronary | MAN2C1 | 0.54 | 0.39 | lasso | 7 | 0.35 | 1.7e-12 | -5.9 | -6.0 | 1.8e-09 | 0.02 | 0.77 | 0.23 | FALSE |
12 | GTEx | Artery Tibial | TSPAN3 | 0.14 | 0.07 | lasso | 5 | 0.10 | 1.6e-08 | -4.9 | 6.3 | 2.1e-10 | -0.44 | 0.99 | 0.00 | FALSE |
13 | GTEx | Artery Tibial | MAN2C1 | 0.33 | 0.45 | lasso | 4 | 0.44 | 9.2e-38 | -5.9 | -5.9 | 3.7e-09 | 0.02 | 0.78 | 0.22 | FALSE |
14 | GTEx | Artery Tibial | ULK3 | 0.06 | 0.04 | enet | 12 | 0.03 | 1.7e-03 | 2.9 | 5.1 | 3.0e-07 | -0.01 | 0.18 | 0.34 | FALSE |
15 | GTEx | Artery Tibial | LINGO1 | 0.08 | 0.04 | lasso | 5 | 0.03 | 2.7e-03 | 4.8 | 5.5 | 4.9e-08 | -0.34 | 0.24 | 0.17 | FALSE |
16 | GTEx | Artery Tibial | RP11-797A18.4 | 0.14 | 0.03 | enet | 25 | 0.09 | 2.3e-07 | -4.7 | 5.2 | 2.5e-07 | -0.54 | 0.56 | 0.42 | FALSE |
17 | GTEx | Brain Frontal Cortex BA9 | MAN2C1 | 0.27 | 0.25 | lasso | 3 | 0.21 | 2.8e-06 | -5.9 | -6.0 | 1.9e-09 | 0.02 | 0.69 | 0.21 | FALSE |
18 | GTEx | Brain Hippocampus | MAN2C1 | 0.21 | 0.26 | lasso | 3 | 0.26 | 9.4e-07 | -5.8 | -5.9 | 4.3e-09 | 0.02 | 0.57 | 0.17 | FALSE |
19 | GTEx | Brain Hippocampus | PEAK1 | 0.23 | 0.05 | lasso | 6 | 0.02 | 9.9e-02 | 4.9 | -5.6 | 1.9e-08 | 0.33 | 0.11 | 0.23 | FALSE |
20 | GTEx | Brain Hypothalamus | RP11-797A18.4 | 0.21 | 0.18 | lasso | 7 | 0.22 | 7.6e-06 | -5.0 | 5.2 | 1.7e-07 | -0.37 | 0.39 | 0.21 | FALSE |
21 | GTEx | Brain Nucleus accumbens basal ganglia | MAN2C1 | 0.14 | 0.17 | lasso | 3 | 0.12 | 3.3e-04 | -5.8 | -5.8 | 5.5e-09 | 0.05 | 0.45 | 0.14 | FALSE |
22 | GTEx | Brain Nucleus accumbens basal ganglia | PEAK1 | 0.17 | 0.12 | lasso | 4 | 0.08 | 2.8e-03 | 5.2 | -5.3 | 1.3e-07 | 0.35 | 0.25 | 0.12 | FALSE |
23 | GTEx | Brain Putamen basal ganglia | RCN2 | 0.15 | 0.05 | enet | 14 | 0.02 | 8.9e-02 | 5.9 | 5.9 | 3.3e-09 | -0.90 | 0.03 | 0.83 | FALSE |
24 | GTEx | Breast Mammary Tissue | PPCDC | 0.12 | 0.04 | lasso | 6 | 0.04 | 2.7e-03 | -3.0 | -5.3 | 1.1e-07 | 0.01 | 0.02 | 0.90 | FALSE |
25 | GTEx | Breast Mammary Tissue | MAN2C1 | 0.42 | 0.54 | lasso | 5 | 0.52 | 4.6e-31 | -5.9 | -5.9 | 3.0e-09 | 0.02 | 0.78 | 0.22 | FALSE |
26 | GTEx | Breast Mammary Tissue (Male) | MAN2C1 | 0.37 | 0.38 | lasso | 3 | 0.34 | 9.7e-09 | -6.0 | -5.9 | 4.2e-09 | 0.03 | 0.77 | 0.22 | FALSE |
27 | GTEx | Breast Mammary Tissue (Male) | C15orf39 | 0.14 | -0.01 | lasso | 3 | 0.01 | 1.7e-01 | -6.8 | -6.6 | 3.6e-11 | 0.06 | 0.02 | 0.36 | FALSE |
28 | GTEx | Breast Mammary Tissue (Female) | PPCDC | 0.16 | 0.06 | lasso | 4 | 0.09 | 1.6e-03 | -3.0 | -6.2 | 4.8e-10 | 0.00 | 0.02 | 0.73 | FALSE |
29 | GTEx | Breast Mammary Tissue (Female) | MAN2C1 | 0.39 | 0.41 | lasso | 6 | 0.45 | 7.6e-15 | -5.5 | -5.7 | 1.0e-08 | 0.02 | 0.84 | 0.16 | FALSE |
30 | GTEx | Cells EBV-transformed lymphocytes | PSTPIP1 | 0.13 | 0.04 | enet | 13 | 0.10 | 4.0e-04 | -6.2 | 6.7 | 1.6e-11 | -0.60 | 0.16 | 0.48 | FALSE |
31 | GTEx | Cells EBV-transformed lymphocytes | MAN2C1 | 0.28 | 0.19 | enet | 22 | 0.26 | 4.6e-09 | -5.9 | -5.3 | 1.0e-07 | 0.00 | 0.78 | 0.20 | FALSE |
32 | GTEx | Cells EBV-transformed lymphocytes | SNUPN | 0.20 | 0.02 | enet | 16 | 0.08 | 1.4e-03 | -5.5 | -5.8 | 8.1e-09 | 0.00 | 0.03 | 0.90 | FALSE |
33 | GTEx | Cells Transformed fibroblasts | PPCDC | 0.16 | 0.08 | enet | 22 | 0.09 | 2.0e-07 | -5.6 | -6.1 | 9.4e-10 | 0.09 | 0.01 | 0.99 | TRUE |
34 | GTEx | Cells Transformed fibroblasts | MAN2C1 | 0.38 | 0.50 | lasso | 4 | 0.49 | 6.2e-42 | -5.9 | -5.9 | 4.4e-09 | 0.02 | 0.79 | 0.21 | FALSE |
35 | GTEx | Cells Transformed fibroblasts | IMP3 | 0.05 | 0.06 | lasso | 2 | 0.05 | 1.3e-04 | -5.6 | 5.6 | 1.9e-08 | -0.05 | 0.06 | 0.88 | FALSE |
36 | GTEx | Colon Sigmoid | MAN2C1 | 0.36 | 0.46 | lasso | 3 | 0.45 | 1.9e-17 | -5.8 | -5.8 | 8.6e-09 | 0.02 | 0.77 | 0.23 | FALSE |
37 | GTEx | Colon Transverse | MAN2C1 | 0.42 | 0.55 | lasso | 6 | 0.54 | 8.1e-30 | -5.9 | -6.0 | 2.1e-09 | 0.02 | 0.75 | 0.25 | FALSE |
38 | GTEx | Colon Transverse | SNUPN | 0.15 | 0.12 | lasso | 3 | 0.08 | 7.7e-05 | -5.9 | -5.9 | 4.6e-09 | 0.02 | 0.02 | 0.97 | FALSE |
39 | GTEx | Colon Transverse | CTD-2323K18.1 | 0.13 | 0.04 | lasso | 11 | 0.05 | 1.8e-03 | -5.9 | -5.7 | 1.3e-08 | 0.01 | 0.24 | 0.36 | FALSE |
40 | GTEx | Esophagus Gastroesophageal Junction | MAN2C1 | 0.37 | 0.49 | lasso | 2 | 0.49 | 7.3e-20 | -5.8 | -5.8 | 7.5e-09 | 0.02 | 0.80 | 0.20 | TRUE |
41 | GTEx | Esophagus Mucosa | MAN2C1 | 0.27 | 0.38 | lasso | 2 | 0.39 | 9.9e-28 | -5.9 | -5.9 | 4.3e-09 | 0.02 | 0.78 | 0.22 | FALSE |
42 | GTEx | Esophagus Muscularis | MAN2C1 | 0.55 | 0.60 | lasso | 3 | 0.62 | 3.6e-47 | -5.9 | -6.0 | 2.1e-09 | 0.01 | 0.76 | 0.24 | FALSE |
43 | GTEx | Heart Atrial Appendage | MAN2C1 | 0.30 | 0.28 | lasso | 5 | 0.29 | 1.8e-13 | -5.8 | -5.8 | 5.8e-09 | 0.02 | 0.77 | 0.23 | FALSE |
44 | GTEx | Heart Left Ventricle | MAN2C1 | 0.18 | 0.19 | lasso | 4 | 0.16 | 4.8e-09 | -5.9 | -5.9 | 3.7e-09 | 0.02 | 0.78 | 0.22 | FALSE |
45 | GTEx | Liver | MAN2C1 | 0.37 | 0.24 | lasso | 5 | 0.21 | 1.6e-06 | -5.9 | -6.4 | 1.5e-10 | 0.04 | 0.54 | 0.22 | FALSE |
46 | GTEx | Lung | MAN2C1 | 0.33 | 0.51 | lasso | 3 | 0.50 | 2.1e-43 | -5.8 | -5.8 | 8.2e-09 | 0.02 | 0.86 | 0.14 | FALSE |
47 | GTEx | Lung | SNUPN | 0.14 | 0.06 | lasso | 2 | 0.07 | 2.7e-06 | -5.7 | -5.5 | 4.1e-08 | 0.02 | 0.04 | 0.96 | FALSE |
48 | GTEx | Muscle Skeletal | PPCDC | 0.13 | 0.07 | lasso | 7 | 0.05 | 6.5e-06 | -4.5 | -5.4 | 6.1e-08 | 0.11 | 0.10 | 0.90 | FALSE |
49 | GTEx | Muscle Skeletal | HMG20A | 0.04 | 0.00 | lasso | 4 | 0.01 | 7.2e-02 | -5.8 | 6.2 | 6.4e-10 | -0.34 | 0.07 | 0.44 | TRUE |
50 | GTEx | Muscle Skeletal | MAN2C1 | 0.05 | 0.01 | enet | 6 | 0.03 | 5.6e-04 | -5.7 | -5.8 | 7.4e-09 | 0.01 | 0.54 | 0.13 | FALSE |
51 | GTEx | Nerve Tibial | MAN2C1 | 0.37 | 0.52 | enet | 20 | 0.53 | 5.6e-44 | -5.9 | -5.3 | 9.1e-08 | 0.00 | 0.77 | 0.23 | FALSE |
52 | GTEx | Nerve Tibial | IMP3 | 0.08 | 0.00 | enet | 14 | 0.00 | 5.5e-01 | 2.4 | 5.8 | 5.3e-09 | -0.10 | 0.04 | 0.23 | TRUE |
53 | GTEx | Nerve Tibial | RP11-817O13.6 | 0.05 | 0.03 | lasso | 2 | 0.01 | 3.5e-02 | -5.8 | -5.4 | 7.1e-08 | 0.04 | 0.36 | 0.09 | FALSE |
54 | GTEx | Ovary | MAN2C1 | 0.45 | 0.54 | lasso | 2 | 0.56 | 2.7e-16 | -5.9 | -5.7 | 1.6e-08 | 0.00 | 0.76 | 0.24 | FALSE |
55 | GTEx | Ovary | RP11-797A18.6 | 0.21 | 0.04 | enet | 15 | 0.13 | 3.7e-04 | -4.9 | 5.5 | 3.1e-08 | -0.54 | 0.09 | 0.20 | FALSE |
56 | GTEx | Pancreas | MAN2C1 | 0.39 | 0.41 | lasso | 1 | 0.39 | 1.0e-17 | -5.9 | -5.9 | 3.3e-09 | 0.02 | 0.77 | 0.23 | FALSE |
57 | GTEx | Pituitary | MAN2C1 | 0.31 | 0.37 | lasso | 5 | 0.34 | 2.1e-09 | -5.8 | -5.7 | 1.0e-08 | 0.02 | 0.78 | 0.22 | FALSE |
58 | GTEx | Prostate | MAN2C1 | 0.26 | 0.30 | lasso | 3 | 0.33 | 4.6e-09 | -5.8 | -5.8 | 8.4e-09 | 0.02 | 0.77 | 0.17 | FALSE |
59 | GTEx | Skin Not Sun Exposed Suprapubic | MAN2C1 | 0.39 | 0.44 | lasso | 4 | 0.44 | 1.2e-26 | -5.8 | -5.8 | 7.7e-09 | 0.01 | 0.80 | 0.20 | FALSE |
60 | GTEx | Skin Sun Exposed Lower leg | PPCDC | 0.24 | 0.06 | lasso | 4 | 0.09 | 3.6e-08 | -6.9 | -5.7 | 1.1e-08 | 0.08 | 0.01 | 0.99 | FALSE |
61 | GTEx | Skin Sun Exposed Lower leg | MAN2C1 | 0.30 | 0.36 | enet | 17 | 0.38 | 1.6e-32 | -5.5 | -6.1 | 8.4e-10 | 0.02 | 0.86 | 0.14 | FALSE |
62 | GTEx | Spleen | MAN2C1 | 0.70 | 0.62 | lasso | 5 | 0.57 | 1.2e-17 | -5.9 | -5.9 | 4.6e-09 | 0.01 | 0.76 | 0.24 | FALSE |
63 | GTEx | Stomach | MAN2C1 | 0.36 | 0.45 | lasso | 3 | 0.46 | 2.0e-24 | -5.8 | -5.9 | 4.7e-09 | 0.02 | 0.79 | 0.21 | FALSE |
64 | GTEx | Testis | SCAPER | 0.12 | 0.14 | lasso | 4 | 0.13 | 1.7e-06 | -5.6 | -5.9 | 3.0e-09 | 0.87 | 0.19 | 0.80 | FALSE |
65 | GTEx | Testis | MAN2C1 | 0.25 | 0.26 | lasso | 4 | 0.28 | 1.1e-12 | -5.9 | -5.6 | 1.7e-08 | 0.05 | 0.75 | 0.25 | TRUE |
66 | GTEx | Testis | ULK3 | 0.15 | 0.03 | enet | 24 | 0.06 | 1.6e-03 | 2.8 | 5.6 | 1.9e-08 | -0.03 | 0.48 | 0.10 | FALSE |
67 | GTEx | Thyroid | NEIL1 | 0.06 | 0.06 | lasso | 2 | 0.07 | 9.0e-06 | -5.8 | -5.8 | 5.5e-09 | 0.02 | 0.69 | 0.16 | FALSE |
68 | GTEx | Thyroid | MAN2C1 | 0.44 | 0.53 | lasso | 6 | 0.55 | 3.1e-49 | -5.8 | -5.8 | 5.9e-09 | 0.01 | 0.81 | 0.19 | FALSE |
69 | GTEx | Thyroid | TBC1D2B | 0.19 | 0.05 | enet | 23 | 0.07 | 2.7e-06 | 4.5 | -5.8 | 5.7e-09 | 0.15 | 0.61 | 0.36 | FALSE |
70 | GTEx | Thyroid | RP11-817O13.6 | 0.05 | 0.05 | lasso | 1 | 0.03 | 1.3e-03 | -5.8 | -5.8 | 5.8e-09 | 0.02 | 0.40 | 0.11 | FALSE |
71 | GTEx | Uterus | MAN2C1 | 0.52 | 0.56 | lasso | 2 | 0.61 | 1.4e-15 | -5.8 | -5.9 | 3.8e-09 | 0.01 | 0.78 | 0.21 | FALSE |
72 | GTEx | Vagina | MAN2C1 | 0.31 | 0.30 | enet | 6 | 0.27 | 5.6e-07 | -5.9 | -5.8 | 6.8e-09 | 0.02 | 0.72 | 0.21 | FALSE |
73 | GTEx | Whole Blood | MAN2C1 | 0.28 | 0.29 | lasso | 5 | 0.29 | 3.2e-27 | -5.8 | -6.0 | 2.2e-09 | 0.02 | 0.81 | 0.19 | FALSE |
74 | METSIM | Adipose | MAN2C1 | 0.22 | 0.41 | lasso | 6 | 0.41 | 1.1e-66 | -5.8 | -5.8 | 5.6e-09 | 0.02 | 0.82 | 0.18 | FALSE |
75 | METSIM | Adipose | PSTPIP1 | 0.04 | 0.04 | lasso | 3 | 0.04 | 2.3e-06 | 5.3 | 5.7 | 1.4e-08 | -0.43 | 0.87 | 0.10 | FALSE |
76 | NTR | Blood | MAN2C1 | 0.02 | 0.03 | lasso | 2 | 0.03 | 1.5e-10 | -6.0 | -6.0 | 2.4e-09 | 0.02 | 0.80 | 0.20 | FALSE |
77 | YFS | Blood | IMP3 | 0.02 | 0.01 | enet | 9 | 0.02 | 5.9e-06 | -5.0 | 5.6 | 2.6e-08 | 0.00 | 0.10 | 0.88 | FALSE |
78 | YFS | Blood | SNUPN | 0.02 | 0.02 | bslmm | 207 | 0.02 | 1.5e-07 | -4.8 | -5.2 | 2.5e-07 | 0.05 | 0.03 | 0.97 | FALSE |
79 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | MAN2C1 | 0.06 | 0.02 | blup | 14 | 0.03 | 8.9e-04 | -5.8 | -5.6 | 2.3e-08 | 0.03 | 0.00 | 0.94 | FALSE |
80 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | SCAMP5 | 0.10 | 0.06 | lasso | 4 | 0.09 | 4.0e-08 | -6.9 | -6.5 | 7.5e-11 | 0.11 | 0.01 | 0.99 | FALSE |
81 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | TSPAN3 | 0.05 | 0.00 | enet | 7 | 0.02 | 9.7e-03 | -4.7 | 5.5 | 2.9e-08 | -0.60 | 0.02 | 0.42 | FALSE |
82 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ETFA | 0.06 | 0.02 | lasso | 5 | 0.03 | 2.0e-07 | -4.7 | 6.7 | 2.2e-11 | -0.65 | 0.02 | 0.98 | FALSE |
83 | The Cancer Genome Atlas | Breast Invasive Carcinoma | RCN2 | 0.16 | 0.04 | enet | 7 | 0.03 | 2.1e-07 | -6.3 | 6.4 | 1.4e-10 | -0.94 | 0.01 | 0.99 | FALSE |
84 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SCAPER | 0.05 | 0.02 | lasso | 3 | 0.02 | 7.5e-05 | -5.4 | 5.9 | 4.4e-09 | -0.49 | 0.22 | 0.67 | FALSE |
85 | The Cancer Genome Atlas | Breast Invasive Carcinoma | TSPAN3 | 0.03 | 0.01 | blup | 43 | 0.01 | 8.2e-03 | -6.5 | 6.9 | 5.6e-12 | -0.68 | 0.00 | 0.96 | FALSE |
86 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | MAN2C1 | 0.12 | 0.11 | blup | 14 | 0.12 | 1.4e-06 | -5.8 | -5.7 | 1.6e-08 | 0.03 | 0.00 | 1.00 | FALSE |
87 | The Cancer Genome Atlas | Colon Adenocarcinoma | PPCDC | 0.11 | 0.03 | blup | 47 | 0.09 | 5.8e-06 | -4.6 | -5.1 | 2.8e-07 | 0.13 | 0.14 | 0.82 | FALSE |
88 | The Cancer Genome Atlas | Colon Adenocarcinoma | RCN2 | 0.11 | 0.00 | blup | 39 | 0.01 | 4.6e-02 | -5.8 | 7.3 | 2.2e-13 | -0.91 | 0.01 | 0.29 | TRUE |
89 | The Cancer Genome Atlas | Colon Adenocarcinoma | SNUPN | 0.11 | 0.10 | lasso | 4 | 0.11 | 6.9e-07 | -5.9 | -5.5 | 3.0e-08 | 0.02 | 0.00 | 1.00 | FALSE |
90 | The Cancer Genome Atlas | Esophageal Carcinoma | SNUPN | 0.18 | 0.11 | lasso | 5 | 0.07 | 2.6e-03 | -5.9 | -5.5 | 5.0e-08 | 0.00 | 0.00 | 0.94 | FALSE |
91 | The Cancer Genome Atlas | Glioblastoma Multiforme | LOC645752 | 0.20 | 0.18 | lasso | 2 | 0.15 | 3.3e-05 | 5.2 | 5.3 | 9.0e-08 | -0.09 | 0.02 | 0.82 | FALSE |
92 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ETFA | 0.17 | 0.01 | enet | 16 | 0.05 | 3.9e-06 | -4.7 | 5.5 | 3.2e-08 | -0.60 | 0.06 | 0.72 | FALSE |
93 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | PPCDC | 0.03 | 0.02 | enet | 9 | 0.03 | 1.4e-04 | -4.5 | -5.3 | 8.6e-08 | 0.10 | 0.10 | 0.60 | FALSE |
94 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | RCN2 | 0.30 | 0.03 | enet | 4 | 0.03 | 3.6e-04 | -6.3 | 6.3 | 2.6e-10 | -0.90 | 0.02 | 0.87 | FALSE |
95 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | SCAMP5 | 0.11 | 0.16 | enet | 10 | 0.16 | 3.5e-18 | -4.5 | -5.7 | 1.4e-08 | 0.12 | 1.00 | 0.00 | FALSE |
96 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | SCAPER | 0.11 | 0.01 | lasso | 3 | 0.01 | 2.2e-02 | -5.4 | 6.7 | 2.4e-11 | -0.70 | 0.03 | 0.62 | FALSE |
97 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SNUPN | 0.05 | 0.03 | blup | 38 | 0.05 | 4.0e-06 | -6.0 | -5.6 | 2.2e-08 | 0.01 | 0.00 | 1.00 | FALSE |
98 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | TSPAN3 | 0.05 | 0.01 | blup | 43 | 0.01 | 1.5e-02 | -4.6 | 6.1 | 1.0e-09 | -0.38 | 0.02 | 0.07 | FALSE |
99 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | PPCDC | 0.07 | 0.07 | lasso | 3 | 0.06 | 1.9e-04 | -6.9 | -7.0 | 2.7e-12 | 0.07 | 0.01 | 0.98 | TRUE |
100 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | SCAMP5 | 0.09 | 0.03 | blup | 41 | 0.08 | 3.3e-05 | -4.5 | -5.9 | 3.7e-09 | 0.10 | 0.07 | 0.86 | FALSE |
101 | The Cancer Genome Atlas | Brain Lower Grade Glioma | LOC645752 | 0.26 | 0.34 | lasso | 2 | 0.33 | 5.2e-39 | 5.2 | 5.2 | 1.9e-07 | -0.09 | 0.98 | 0.02 | FALSE |
102 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MAN2C1 | 0.08 | 0.06 | blup | 14 | 0.09 | 2.0e-10 | -5.8 | -5.4 | 5.3e-08 | 0.03 | 0.00 | 1.00 | FALSE |
103 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PSTPIP1 | 0.07 | 0.02 | lasso | 3 | 0.02 | 8.9e-04 | 5.2 | 6.1 | 1.4e-09 | -0.75 | 0.06 | 0.80 | FALSE |
104 | The Cancer Genome Atlas | Brain Lower Grade Glioma | RCN2 | 0.18 | 0.00 | blup | 39 | 0.01 | 4.6e-02 | -6.3 | 5.8 | 6.6e-09 | -0.78 | 0.01 | 0.55 | FALSE |
105 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | SCAMP5 | 0.14 | 0.18 | lasso | 5 | 0.19 | 3.3e-09 | -4.5 | -5.8 | 6.1e-09 | 0.13 | 0.24 | 0.76 | FALSE |
106 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | SNUPN | 0.14 | 0.10 | lasso | 4 | 0.08 | 1.1e-04 | -6.0 | -6.0 | 2.6e-09 | 0.03 | 0.00 | 0.99 | FALSE |
107 | The Cancer Genome Atlas | Lung Adenocarcinoma | ETFA | 0.09 | 0.01 | enet | 7 | 0.03 | 3.2e-04 | 4.0 | 5.2 | 1.6e-07 | -0.65 | 0.02 | 0.91 | FALSE |
108 | The Cancer Genome Atlas | Lung Adenocarcinoma | SCAMP5 | 0.06 | 0.06 | blup | 41 | 0.06 | 6.1e-08 | -4.6 | -5.9 | 4.5e-09 | 0.12 | 0.14 | 0.86 | FALSE |
109 | The Cancer Genome Atlas | Lung Adenocarcinoma | SNUPN | 0.03 | 0.03 | enet | 8 | 0.02 | 9.9e-04 | -5.5 | -6.1 | 1.0e-09 | 0.01 | 0.00 | 0.98 | FALSE |
110 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | ETFA | 0.12 | 0.01 | lasso | 2 | 0.02 | 1.4e-03 | -5.6 | 6.0 | 2.4e-09 | -0.77 | 0.03 | 0.59 | FALSE |
111 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | PPCDC | 0.03 | 0.02 | blup | 47 | 0.02 | 1.5e-03 | -4.4 | -5.9 | 4.4e-09 | 0.10 | 0.03 | 0.87 | FALSE |
112 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | RCN2 | 0.16 | 0.02 | enet | 2 | 0.00 | 1.0e-01 | -6.3 | 6.4 | 1.3e-10 | -0.91 | 0.01 | 0.84 | FALSE |
113 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | SCAPER | 0.06 | 0.00 | enet | 5 | 0.00 | 3.4e-01 | -6.0 | 6.1 | 1.4e-09 | -0.51 | 0.02 | 0.20 | FALSE |
114 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | MAN2C1 | 0.08 | 0.02 | blup | 14 | 0.04 | 1.3e-02 | -5.8 | -5.6 | 1.7e-08 | 0.03 | 0.00 | 0.75 | FALSE |
115 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | SCAMP5 | 0.09 | 0.07 | lasso | 7 | 0.04 | 7.1e-03 | -4.5 | -5.2 | 2.5e-07 | 0.11 | 0.03 | 0.32 | FALSE |
116 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | LOC645752 | 0.14 | 0.05 | lasso | 2 | 0.07 | 1.1e-03 | -4.7 | 5.1 | 3.1e-07 | -0.12 | 0.03 | 0.68 | FALSE |
117 | The Cancer Genome Atlas | Prostate Adenocarcinoma | NEIL1 | 0.05 | 0.05 | lasso | 3 | 0.05 | 9.0e-06 | -5.8 | -5.9 | 4.0e-09 | 0.03 | 0.00 | 1.00 | FALSE |
118 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PPCDC | 0.15 | 0.12 | enet | 5 | 0.12 | 2.1e-12 | -4.4 | -5.2 | 2.4e-07 | 0.09 | 0.99 | 0.01 | FALSE |
119 | The Cancer Genome Atlas | Rectum Adenocarcinoma | ETFA | 0.32 | -0.01 | blup | 67 | 0.00 | 4.0e-01 | -3.6 | 6.0 | 2.5e-09 | -0.60 | 0.01 | 0.21 | FALSE |
120 | The Cancer Genome Atlas | Rectum Adenocarcinoma | PPCDC | 0.29 | 0.10 | blup | 47 | 0.22 | 5.5e-06 | -4.6 | -5.3 | 1.2e-07 | 0.10 | 0.15 | 0.39 | FALSE |
121 | The Cancer Genome Atlas | Soft Tissue Sarcoma | RCN2 | 0.15 | 0.00 | enet | 9 | 0.02 | 1.5e-02 | 5.9 | 5.8 | 8.6e-09 | -0.61 | 0.01 | 0.32 | FALSE |
122 | The Cancer Genome Atlas | Soft Tissue Sarcoma | SCAMP5 | 0.08 | 0.06 | lasso | 3 | 0.06 | 1.2e-04 | -4.6 | -5.6 | 1.7e-08 | 0.13 | 0.06 | 0.92 | FALSE |
123 | The Cancer Genome Atlas | Stomach Adenocarcinoma | ETFA | 0.08 | 0.00 | blup | 67 | 0.01 | 6.1e-02 | -5.9 | 6.1 | 1.2e-09 | -0.67 | 0.01 | 0.30 | FALSE |
124 | The Cancer Genome Atlas | Stomach Adenocarcinoma | RCN2 | 0.13 | 0.00 | blup | 39 | 0.00 | 1.9e-01 | -3.7 | 6.6 | 3.1e-11 | -0.75 | 0.00 | 0.10 | FALSE |
125 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | LOC645752 | 0.18 | 0.11 | enet | 5 | 0.12 | 4.0e-05 | 6.9 | 6.5 | 6.2e-11 | -0.14 | 0.00 | 0.99 | TRUE |
126 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | ETFA | 0.20 | 0.00 | blup | 67 | 0.02 | 9.4e-02 | 4.0 | 6.2 | 5.8e-10 | -0.64 | 0.01 | 0.46 | FALSE |