[Hub]/) : Traits : Schizophrenia (2014) :

chr19:18,408,222-20,432,930

Best TWAS P=1.17e-09 · Best GWAS P=3.12e-09 conditioned to 0.088

Associated models

# Study Tissue Gene h2 eQTL R2 model # weights model R2 model R2 P eQTL GWAS Z TWAS Z TWAS P Top SNP corr PP3 PP4 joint
1 CommonMind Brain Pre-frontal Cortex GATAD2A 0.13 0.30 lasso 7 0.29 2.4e-35 5.7 -5.5 3.7e-08 -0.99 0.02 0.98 FALSE
2 GTEx Artery Tibial MAU2 0.07 0.05 lasso 4 0.05 1.3e-04 5.2 5.3 8.9e-08 0.85 0.04 0.93 FALSE
3 GTEx Brain Cerebellum SUGP2 0.15 -0.01 enet 27 0.00 2.3e-01 5.2 6.1 1.2e-09 0.70 0.03 0.62 TRUE
4 GTEx Brain Cerebellum PBX4 0.20 0.09 lasso 6 0.13 9.9e-05 5.6 5.2 2.7e-07 0.70 0.10 0.64 FALSE
5 GTEx Cells Transformed fibroblasts LPAR2 0.04 0.05 lasso 2 0.04 5.5e-04 5.1 -5.5 2.9e-08 -0.66 0.06 0.77 FALSE
6 GTEx Lung LPAR2 0.07 0.09 lasso 3 0.05 9.9e-05 5.1 -5.2 1.6e-07 -0.59 0.28 0.69 FALSE
7 GTEx Nerve Tibial LPAR2 0.14 0.05 lasso 5 0.06 2.3e-05 5.1 -5.2 2.1e-07 -0.58 0.31 0.58 FALSE
8 GTEx Whole Blood TMEM161A 0.06 0.00 enet 2 0.00 1.4e-01 5.7 -5.7 1.1e-08 -1.00 0.03 0.84 FALSE
9 YFS Blood GATAD2A 0.09 0.14 blup 365 0.14 7.5e-44 5.7 5.7 1.3e-08 0.92 0.02 0.98 FALSE
10 The Cancer Genome Atlas Colon Adenocarcinoma GATAD2A 0.04 0.03 blup 61 0.05 1.3e-03 5.7 5.3 1.4e-07 0.94 0.03 0.84 FALSE
11 The Cancer Genome Atlas Head and Neck Squamous Cell Carcinoma GATAD2A 0.02 0.02 lasso 1 0.02 2.1e-03 5.7 5.7 1.1e-08 0.99 0.02 0.78 FALSE
12 The Cancer Genome Atlas Kidney Renal Clear Cell Carcinoma GMIP 0.03 0.02 lasso 4 0.02 3.2e-03 5.1 5.8 5.7e-09 0.68 0.00 0.94 FALSE
13 The Cancer Genome Atlas Brain Lower Grade Glioma GMIP 0.07 0.04 blup 43 0.04 8.5e-06 3.9 5.3 1.4e-07 0.42 0.21 0.74 TRUE
14 The Cancer Genome Atlas Brain Lower Grade Glioma TSSK6 0.02 0.02 blup 33 0.02 1.8e-03 5.6 5.8 5.3e-09 0.95 0.01 0.82 FALSE
15 The Cancer Genome Atlas Prostate Adenocarcinoma GATAD2A 0.04 0.03 lasso 2 0.03 2.9e-04 5.8 5.5 3.5e-08 0.95 0.02 0.94 FALSE
16 The Cancer Genome Atlas Thyroid Carcinoma KIAA0892 0.04 0.04 blup 43 0.02 4.1e-03 5.0 -5.6 1.7e-08 -0.94 0.05 0.90 FALSE