Best TWAS P=1.28e-11 · Best GWAS P=9.83e-12 conditioned to 0.106
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | EXD1 | 0.04 | 0.04 | lasso | 3 | 0.04 | 8.1e-06 | 6.3 | -6.1 | 1.2e-09 | -0.94 | 0.05 | 0.95 | FALSE |
2 | GTEx | Artery Aorta | OIP5-AS1 | 0.16 | 0.21 | enet | 26 | 0.23 | 5.2e-13 | 4.4 | 5.2 | 2.6e-07 | 0.74 | 1.00 | 0.00 | FALSE |
3 | GTEx | Brain Cortex | GCHFR | 0.25 | 0.04 | enet | 15 | 0.05 | 1.4e-02 | 5.4 | -5.6 | 2.2e-08 | -0.77 | 0.04 | 0.72 | FALSE |
4 | GTEx | Colon Sigmoid | NDUFAF1 | 0.15 | 0.06 | lasso | 4 | 0.06 | 5.2e-03 | 5.6 | -6.3 | 2.1e-10 | -0.70 | 0.16 | 0.60 | FALSE |
5 | GTEx | Esophagus Mucosa | NDUFAF1 | 0.25 | 0.18 | enet | 26 | 0.24 | 4.3e-16 | 5.6 | -5.3 | 1.1e-07 | -0.60 | 0.93 | 0.07 | FALSE |
6 | GTEx | Esophagus Mucosa | CHP1 | 0.19 | 0.10 | lasso | 7 | 0.09 | 1.4e-06 | 5.6 | -5.9 | 4.5e-09 | -0.94 | 0.02 | 0.98 | FALSE |
7 | GTEx | Lung | OIP5-AS1 | 0.09 | 0.08 | enet | 14 | 0.12 | 2.8e-09 | 6.4 | 5.8 | 6.8e-09 | 0.88 | 0.02 | 0.98 | FALSE |
8 | GTEx | Skin Not Sun Exposed Suprapubic | NDUFAF1 | 0.16 | 0.06 | lasso | 3 | 0.07 | 1.7e-04 | 5.6 | -5.7 | 1.2e-08 | -0.50 | 0.09 | 0.13 | FALSE |
9 | GTEx | Skin Sun Exposed Lower leg | CHP1 | 0.06 | 0.04 | enet | 9 | 0.04 | 3.1e-04 | 6.4 | -6.8 | 1.3e-11 | -0.90 | 0.03 | 0.95 | TRUE |
10 | NTR | Blood | INO80 | 0.02 | 0.02 | enet | 8 | 0.03 | 2.8e-09 | 5.5 | -5.5 | 3.1e-08 | -0.84 | 0.54 | 0.46 | FALSE |
11 | YFS | Blood | MGA | 0.01 | 0.00 | blup | 454 | 0.00 | 7.1e-02 | 5.9 | 6.0 | 1.5e-09 | 0.69 | 0.02 | 0.82 | FALSE |
12 | The Cancer Genome Atlas | Breast Invasive Carcinoma | CHP | 0.01 | 0.01 | blup | 54 | 0.01 | 1.4e-02 | 6.8 | -6.3 | 2.6e-10 | -0.92 | 0.01 | 0.90 | FALSE |
13 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | RPAP1 | 0.04 | 0.00 | blup | 56 | 0.03 | 1.4e-02 | 5.6 | -5.1 | 3.1e-07 | -0.36 | 0.01 | 0.78 | FALSE |