[Hub]/) : Traits : Mean time to correctly identify matches : ← →

chr11:45,258,966-48,285,906

Best TWAS P=4.64e-13 · Best GWAS P=2.7e-11 conditioned to 0.0323

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	CommonMind	Brain Pre-frontal Cortex	LRP4	0.04	0.05	lasso	4	0.04	6.6e-06	5.4	5.6	1.9e-08	0.66	0.78	0.20	FALSE
2	GTEx	Adipose Subcutaneous	ARHGAP1	0.08	0.03	lasso	6	0.05	3.4e-05	5.4	-6.3	2.9e-10	-0.84	0.25	0.69	FALSE
3	GTEx	Breast Mammary Tissue	ARHGAP1	0.05	0.00	enet	14	0.01	1.3e-01	6.2	-5.4	6.3e-08	-0.79	0.08	0.46	FALSE
4	GTEx	Cells EBV-transformed lymphocytes	LRP4	0.68	0.00	lasso	10	0.00	5.0e-01	-3.4	-5.2	2.6e-07	-0.46	0.03	0.12	FALSE
5	GTEx	Esophagus Mucosa	ARFGAP2	0.05	0.06	lasso	4	0.05	4.4e-04	5.1	5.2	1.9e-07	0.72	0.30	0.11	FALSE
6	GTEx	Esophagus Muscularis	CKAP5	0.05	0.03	lasso	4	0.04	3.3e-03	5.1	6.0	2.2e-09	0.69	0.38	0.13	FALSE
7	GTEx	Esophagus Muscularis	ARHGAP1	0.07	0.08	lasso	3	0.07	6.1e-05	5.1	-5.5	3.2e-08	-0.79	0.39	0.56	FALSE
8	GTEx	Esophagus Muscularis	ATG13	0.12	0.08	enet	16	0.04	1.2e-03	6.3	-5.2	1.6e-07	-0.63	0.04	0.95	FALSE
9	GTEx	Liver	ZNF408	0.10	0.09	lasso	3	0.08	3.5e-03	6.4	-6.9	4.8e-12	-0.95	0.05	0.56	FALSE
10	GTEx	Liver	ARHGAP1	0.12	0.05	enet	4	0.05	1.5e-02	5.9	-7.2	4.6e-13	-0.71	0.05	0.46	TRUE
11	GTEx	Muscle Skeletal	ARHGAP1	0.03	0.05	lasso	2	0.04	1.2e-04	6.2	-6.2	7.4e-10	-0.93	0.04	0.93	FALSE
12	GTEx	Nerve Tibial	ARHGAP1	0.10	0.03	enet	14	0.05	9.7e-05	6.4	-5.9	2.8e-09	-0.88	0.09	0.90	FALSE
13	GTEx	Nerve Tibial	LRP4-AS1	0.23	0.16	enet	15	0.24	1.1e-16	-3.4	5.2	2.1e-07	0.60	0.98	0.02	FALSE
14	GTEx	Ovary	ARHGAP1	0.25	0.09	lasso	16	0.18	3.8e-05	6.1	-7.0	1.8e-12	-0.84	0.09	0.71	FALSE
15	GTEx	Pancreas	LRP4	0.11	0.10	enet	16	0.14	1.8e-06	5.1	-5.2	1.9e-07	-0.76	0.57	0.39	FALSE
16	GTEx	Pancreas	ARHGAP1	0.09	0.06	lasso	7	0.04	6.4e-03	6.2	-6.3	2.7e-10	-0.92	0.06	0.74	FALSE
17	GTEx	Pancreas	LRP4-AS1	0.10	0.08	lasso	6	0.12	1.4e-05	5.1	-5.4	7.8e-08	-0.76	0.40	0.49	FALSE
18	GTEx	Prostate	CELF1	0.17	0.16	lasso	2	0.12	6.2e-04	5.4	5.4	5.4e-08	0.60	0.03	0.84	FALSE
19	GTEx	Prostate	ZNF408	0.19	0.10	lasso	2	0.10	1.6e-03	5.3	-5.3	1.0e-07	-0.65	0.14	0.11	FALSE
20	GTEx	Skin Not Sun Exposed Suprapubic	ARHGAP1	0.06	0.01	lasso	9	0.00	2.8e-01	5.3	-6.2	4.2e-10	-0.84	0.10	0.46	FALSE
21	GTEx	Skin Not Sun Exposed Suprapubic	ATG13	0.12	0.07	lasso	5	0.06	3.3e-04	5.8	-6.0	1.5e-09	-0.64	0.06	0.94	FALSE
22	GTEx	Skin Sun Exposed Lower leg	DDB2	0.08	0.10	lasso	4	0.10	5.8e-09	5.1	5.7	1.0e-08	0.70	0.28	0.72	FALSE
23	GTEx	Skin Sun Exposed Lower leg	ARHGAP1	0.08	0.01	lasso	5	0.02	1.4e-02	6.2	-5.8	6.5e-09	-0.87	0.13	0.55	FALSE
24	GTEx	Skin Sun Exposed Lower leg	ATG13	0.08	0.05	lasso	4	0.05	5.1e-05	6.4	-5.6	1.6e-08	-0.66	0.05	0.95	FALSE
25	GTEx	Spleen	LRP4	0.15	0.14	lasso	5	0.12	6.5e-04	6.0	-6.0	2.5e-09	-0.46	0.12	0.32	FALSE
26	GTEx	Thyroid	C11orf49	0.09	0.05	lasso	3	0.04	3.0e-04	6.0	-5.9	2.8e-09	-0.46	0.33	0.63	FALSE
27	GTEx	Uterus	C11orf49	0.24	0.24	lasso	13	0.24	1.3e-05	5.8	-5.8	5.2e-09	-0.47	0.11	0.23	FALSE
28	METSIM	Adipose	DDB2	0.03	0.03	lasso	2	0.02	1.9e-04	5.4	-5.4	5.7e-08	-0.55	0.19	0.77	FALSE
29	ROSMAP	Brain Pre-frontal Cortex	C11orf49	0.02	0.02	blup	322	0.02	3.3e-04	5.2	5.3	1.4e-07	0.73	0.82	0.11	FALSE
30	ROSMAP	Brain Pre-frontal Cortex	PACSIN3	0.11	0.00	bslmm	292	0.04	1.8e-06	-3.6	6.5	5.9e-11	0.46	0.08	0.55	FALSE
31	YFS	Blood	PHF21A	0.01	0.01	bslmm	385	0.00	1.9e-02	4.2	5.5	4.6e-08	0.33	0.60	0.13	FALSE
32	The Cancer Genome Atlas	Breast Invasive Carcinoma	ARHGAP1	0.02	0.01	blup	26	0.02	2.7e-04	6.2	-6.8	1.3e-11	-0.88	0.01	0.82	FALSE
33	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	MDK	0.03	0.02	lasso	3	0.02	2.3e-03	6.3	-5.5	3.4e-08	-0.61	0.01	0.97	FALSE
34	The Cancer Genome Atlas	Kidney Renal Papillary Cell Carcinoma	CKAP5	0.09	0.01	blup	58	0.04	2.9e-03	5.2	6.6	4.2e-11	0.63	0.04	0.78	FALSE
35	The Cancer Genome Atlas	Pancreatic Adenocarcinoma	ARHGAP1	0.11	0.01	blup	26	0.03	2.7e-02	5.3	-6.1	1.4e-09	-0.85	0.01	0.54	FALSE
36	The Cancer Genome Atlas	Prostate Adenocarcinoma	ZNF408	0.02	0.00	blup	27	0.02	4.3e-03	5.0	-5.8	8.2e-09	-0.87	0.01	0.60	FALSE
37	The Cancer Genome Atlas	Stomach Adenocarcinoma	HARBI1	0.05	0.02	blup	12	0.02	1.5e-02	5.9	5.8	5.7e-09	0.68	0.01	0.75	FALSE
38	The Cancer Genome Atlas	Thyroid Carcinoma	PACSIN3	0.09	0.01	enet	5	0.03	3.1e-04	5.5	5.3	1.5e-07	0.54	0.02	0.82	FALSE