Best TWAS P=9.82e-19 · Best GWAS P=1.95e-17 conditioned to 0.565
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ADCY3 | 0.16 | 0.12 | lasso | 10 | 0.14 | 3.2e-17 | -8.1 | 7.2 | 5.3e-13 | -0.80 | 0.05 | 0.95 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | CENPO | 0.07 | 0.03 | bslmm | 322 | 0.03 | 7.0e-05 | -3.4 | 6.7 | 1.6e-11 | -0.52 | 0.48 | 0.24 | FALSE |
3 | GTEx | Adipose Subcutaneous | ADCY3 | 0.07 | 0.04 | lasso | 6 | 0.01 | 3.2e-02 | -7.9 | -7.6 | 4.2e-14 | 0.75 | 0.06 | 0.94 | FALSE |
4 | GTEx | Adipose Subcutaneous | UBXN2A | 0.06 | 0.04 | lasso | 5 | 0.04 | 5.2e-04 | -6.3 | -5.9 | 3.5e-09 | 0.09 | 0.26 | 0.71 | FALSE |
5 | GTEx | Adipose Subcutaneous | RP11-443B20.1 | 0.04 | 0.00 | enet | 10 | 0.00 | 1.2e-01 | -2.3 | -5.2 | 2.4e-07 | 0.71 | 0.05 | 0.88 | FALSE |
6 | GTEx | Adipose Visceral Omentum | UBXN2A | 0.10 | 0.08 | enet | 29 | 0.03 | 9.8e-03 | -6.5 | -5.9 | 3.5e-09 | 0.10 | 0.08 | 0.90 | FALSE |
7 | GTEx | Adrenal Gland | PTRHD1 | 0.32 | 0.28 | lasso | 3 | 0.26 | 8.3e-10 | 5.9 | -5.9 | 3.3e-09 | 0.39 | 0.98 | 0.00 | FALSE |
8 | GTEx | Artery Aorta | NCOA1 | 0.15 | 0.00 | enet | 15 | 0.01 | 1.4e-01 | -6.0 | -6.9 | 4.9e-12 | 0.31 | 0.07 | 0.14 | FALSE |
9 | GTEx | Artery Tibial | ADCY3 | 0.21 | 0.14 | lasso | 6 | 0.15 | 4.3e-12 | -6.9 | -7.3 | 2.3e-13 | 0.63 | 0.68 | 0.32 | FALSE |
10 | GTEx | Artery Tibial | UBXN2A | 0.12 | 0.06 | enet | 24 | 0.09 | 1.5e-07 | -3.9 | -6.4 | 2.0e-10 | 0.12 | 0.76 | 0.24 | FALSE |
11 | GTEx | Artery Tibial | RP11-443B20.1 | 0.17 | 0.08 | enet | 40 | 0.09 | 8.2e-08 | -6.9 | -6.4 | 1.2e-10 | 0.54 | 0.20 | 0.78 | FALSE |
12 | GTEx | Cells EBV-transformed lymphocytes | ADCY3 | 0.25 | 0.23 | enet | 10 | 0.12 | 9.2e-05 | -7.9 | 8.8 | 9.8e-19 | -0.77 | 0.07 | 0.92 | TRUE |
13 | GTEx | Cells EBV-transformed lymphocytes | RP11-443B20.1 | 0.13 | 0.13 | enet | 9 | 0.05 | 9.2e-03 | -7.9 | 8.7 | 5.0e-18 | -0.83 | 0.05 | 0.87 | FALSE |
14 | GTEx | Colon Transverse | UBXN2A | 0.11 | 0.01 | enet | 8 | 0.03 | 8.7e-03 | -6.2 | -6.8 | 1.1e-11 | 0.12 | 0.07 | 0.72 | FALSE |
15 | GTEx | Esophagus Muscularis | NCOA1 | 0.11 | 0.01 | enet | 9 | 0.01 | 5.8e-02 | -5.5 | -7.5 | 4.3e-14 | 0.48 | 0.08 | 0.13 | FALSE |
16 | GTEx | Lung | NCOA1 | 0.12 | 0.04 | lasso | 7 | 0.06 | 1.9e-05 | -2.0 | -6.2 | 4.7e-10 | 0.23 | 0.52 | 0.03 | TRUE |
17 | GTEx | Lung | UBXN2A | 0.09 | 0.06 | enet | 7 | 0.07 | 6.1e-06 | -4.2 | -6.3 | 3.8e-10 | 0.11 | 0.25 | 0.74 | FALSE |
18 | GTEx | Muscle Skeletal | UBXN2A | 0.10 | 0.04 | lasso | 7 | 0.03 | 5.5e-04 | -4.2 | -5.4 | 7.4e-08 | 0.09 | 0.26 | 0.74 | FALSE |
19 | GTEx | Nerve Tibial | ADCY3 | 0.09 | 0.05 | enet | 6 | 0.03 | 2.2e-03 | -6.9 | 8.5 | 2.2e-17 | -0.81 | 0.06 | 0.94 | FALSE |
20 | GTEx | Nerve Tibial | RP11-443B20.1 | 0.07 | 0.03 | enet | 6 | 0.02 | 1.1e-02 | -6.9 | 7.8 | 8.0e-15 | -0.71 | 0.08 | 0.89 | FALSE |
21 | GTEx | Skin Sun Exposed Lower leg | UBXN2A | 0.08 | 0.04 | enet | 17 | 0.03 | 1.3e-03 | -6.3 | -5.8 | 7.5e-09 | 0.11 | 0.58 | 0.33 | FALSE |
22 | GTEx | Small Intestine Terminal Ileum | UBXN2A | 0.18 | 0.08 | enet | 33 | 0.16 | 2.5e-04 | -6.4 | -6.3 | 3.2e-10 | 0.15 | 0.03 | 0.90 | FALSE |
23 | GTEx | Spleen | UBXN2A | 0.31 | 0.11 | enet | 19 | 0.17 | 4.1e-05 | 6.8 | -7.5 | 8.2e-14 | 0.14 | 0.04 | 0.92 | TRUE |
24 | GTEx | Stomach | UBXN2A | 0.13 | 0.14 | enet | 5 | 0.14 | 3.6e-07 | -3.9 | -5.2 | 1.7e-07 | 0.09 | 0.58 | 0.31 | FALSE |
25 | GTEx | Whole Blood | DNAJC27 | 0.08 | 0.10 | lasso | 1 | 0.10 | 2.2e-09 | -7.8 | -7.8 | 6.0e-15 | 0.69 | 0.11 | 0.89 | FALSE |
26 | GTEx | Whole Blood | ADCY3 | 0.23 | 0.24 | enet | 24 | 0.27 | 5.5e-25 | -8.1 | -8.1 | 4.7e-16 | 0.76 | 0.05 | 0.95 | FALSE |
27 | GTEx | Whole Blood | UBXN2A | 0.17 | 0.07 | lasso | 8 | 0.09 | 2.1e-08 | -4.2 | -7.1 | 9.2e-13 | 0.12 | 0.03 | 0.97 | FALSE |
28 | GTEx | Whole Blood | RP11-443B20.1 | 0.21 | 0.17 | enet | 32 | 0.20 | 1.8e-18 | -7.8 | -7.8 | 7.4e-15 | 0.77 | 0.08 | 0.92 | FALSE |
29 | ROSMAP | Brain Pre-frontal Cortex | ADCY3 | 0.17 | 0.26 | enet | 32 | 0.26 | 6.8e-33 | -8.1 | 8.8 | 1.1e-18 | -0.80 | 0.04 | 0.96 | FALSE |
30 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ADCY3 | 0.05 | 0.03 | blup | 81 | 0.03 | 5.0e-07 | -4.5 | 6.5 | 8.8e-11 | -0.48 | 0.69 | 0.25 | FALSE |
31 | The Cancer Genome Atlas | Glioblastoma Multiforme | ADCY3 | 0.36 | 0.14 | enet | 7 | 0.13 | 8.9e-05 | -5.8 | 6.4 | 1.9e-10 | -0.32 | 0.04 | 0.18 | FALSE |
32 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ADCY3 | 0.08 | 0.03 | enet | 16 | 0.03 | 1.5e-04 | -4.6 | 5.5 | 3.0e-08 | -0.10 | 0.03 | 0.08 | FALSE |
33 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ADCY3 | 0.03 | 0.02 | blup | 81 | 0.02 | 7.1e-04 | -6.3 | 7.9 | 2.5e-15 | -0.77 | 0.07 | 0.87 | FALSE |
34 | The Cancer Genome Atlas | Lung Adenocarcinoma | DNAJC27 | 0.05 | 0.01 | blup | 46 | 0.04 | 3.2e-05 | -2.7 | 5.3 | 1.4e-07 | -0.52 | 0.56 | 0.35 | FALSE |
35 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | UBXN2A | 0.03 | 0.02 | blup | 46 | 0.03 | 5.7e-04 | -4.2 | -5.7 | 1.4e-08 | 0.09 | 0.26 | 0.40 | FALSE |
36 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | EFR3B | 0.26 | 0.01 | lasso | 4 | 0.05 | 3.8e-03 | -5.5 | -5.2 | 1.7e-07 | 0.41 | 0.03 | 0.16 | FALSE |