Best TWAS P=6.38e-11 · Best GWAS P=2.67e-08 conditioned to 0.283
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ACTR1A | 0.03 | 0.01 | blup | 347 | 0.01 | 5.6e-02 | 3.8 | 5.7 | 1.5e-08 | -0.63 | 0.10 | 0.46 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | ARL3 | 0.03 | 0.03 | lasso | 6 | 0.03 | 1.8e-04 | -5.5 | 5.6 | 1.6e-08 | -0.81 | 0.03 | 0.97 | FALSE |
3 | GTEx | Adipose Subcutaneous | WBP1L | 0.05 | 0.00 | enet | 8 | 0.00 | 5.3e-01 | -5.4 | 5.9 | 2.9e-09 | -0.82 | 0.04 | 0.69 | FALSE |
4 | GTEx | Adrenal Gland | TMEM180 | 0.19 | 0.15 | enet | 12 | 0.09 | 3.5e-04 | -5.5 | -6.5 | 6.4e-11 | 0.92 | 0.02 | 0.97 | TRUE |
5 | GTEx | Artery Coronary | TMEM180 | 0.14 | 0.05 | enet | 13 | 0.04 | 2.4e-02 | -5.6 | -5.7 | 1.5e-08 | 0.94 | 0.03 | 0.90 | FALSE |
6 | GTEx | Brain Cerebellar Hemisphere | TMEM180 | 0.23 | 0.23 | lasso | 10 | 0.10 | 1.3e-03 | -5.5 | -5.4 | 6.9e-08 | 0.95 | 0.03 | 0.96 | FALSE |
7 | GTEx | Brain Cerebellum | TMEM180 | 0.25 | 0.29 | enet | 11 | 0.26 | 3.5e-08 | -5.5 | -5.5 | 3.6e-08 | 0.98 | 0.02 | 0.97 | FALSE |
8 | GTEx | Brain Hypothalamus | TMEM180 | 0.21 | 0.20 | lasso | 5 | 0.12 | 8.5e-04 | -5.3 | -5.1 | 2.6e-07 | 0.92 | 0.03 | 0.91 | FALSE |
9 | GTEx | Breast Mammary Tissue | TMEM180 | 0.17 | 0.16 | enet | 9 | 0.17 | 3.6e-09 | -5.3 | -5.6 | 2.5e-08 | 0.97 | 0.02 | 0.98 | FALSE |
10 | GTEx | Breast Mammary Tissue (Male) | TMEM180 | 0.26 | 0.15 | lasso | 17 | 0.17 | 1.0e-04 | -5.5 | -5.3 | 9.7e-08 | 0.94 | 0.03 | 0.91 | FALSE |
11 | GTEx | Colon Sigmoid | TMEM180 | 0.32 | 0.41 | lasso | 3 | 0.38 | 1.5e-14 | -5.5 | -5.6 | 2.2e-08 | 0.99 | 0.02 | 0.98 | FALSE |
12 | GTEx | Colon Transverse | TMEM180 | 0.16 | 0.15 | enet | 11 | 0.13 | 1.2e-06 | -5.5 | -5.5 | 3.8e-08 | 0.98 | 0.02 | 0.98 | FALSE |
13 | GTEx | Esophagus Muscularis | SUFU | 0.07 | 0.04 | enet | 18 | 0.03 | 5.2e-03 | -5.3 | -5.7 | 1.1e-08 | 0.74 | 0.05 | 0.91 | FALSE |
14 | GTEx | Esophagus Muscularis | TMEM180 | 0.23 | 0.22 | enet | 19 | 0.19 | 1.6e-11 | -5.3 | -5.4 | 5.3e-08 | 0.96 | 0.02 | 0.98 | FALSE |
15 | GTEx | Heart Left Ventricle | TMEM180 | 0.19 | 0.17 | enet | 14 | 0.17 | 3.7e-09 | -5.5 | -5.2 | 1.7e-07 | 0.94 | 0.02 | 0.98 | FALSE |
16 | GTEx | Lung | TMEM180 | 0.12 | 0.11 | lasso | 4 | 0.13 | 5.1e-10 | -5.6 | -5.3 | 9.6e-08 | 0.95 | 0.02 | 0.98 | FALSE |
17 | GTEx | Nerve Tibial | TMEM180 | 0.32 | 0.30 | enet | 16 | 0.32 | 2.0e-23 | -5.5 | -5.5 | 3.5e-08 | 0.98 | 0.02 | 0.98 | FALSE |
18 | GTEx | Pituitary | TMEM180 | 0.36 | 0.23 | enet | 12 | 0.20 | 1.1e-05 | -5.5 | -5.4 | 5.5e-08 | 0.96 | 0.02 | 0.96 | FALSE |
19 | GTEx | Spleen | TMEM180 | 0.16 | 0.21 | lasso | 3 | 0.05 | 2.6e-02 | -5.3 | -5.2 | 1.8e-07 | 0.94 | 0.03 | 0.86 | FALSE |
20 | GTEx | Stomach | TMEM180 | 0.33 | 0.22 | lasso | 8 | 0.21 | 2.2e-10 | -5.5 | -5.5 | 3.1e-08 | 0.97 | 0.02 | 0.98 | FALSE |
21 | GTEx | Thyroid | TMEM180 | 0.31 | 0.38 | enet | 20 | 0.42 | 8.1e-35 | -5.5 | -5.3 | 1.3e-07 | 0.95 | 0.02 | 0.98 | FALSE |
22 | METSIM | Adipose | TMEM180 | 0.28 | 0.25 | enet | 33 | 0.26 | 2.5e-39 | -5.3 | -5.8 | 7.9e-09 | 0.94 | 0.03 | 0.97 | FALSE |
23 | NTR | Blood | ACTR1A | 0.03 | 0.03 | enet | 19 | 0.03 | 1.4e-09 | -5.3 | 6.3 | 2.5e-10 | -0.90 | 0.02 | 0.98 | FALSE |
24 | NTR | Blood | TRIM8 | 0.02 | 0.01 | enet | 11 | 0.01 | 2.1e-03 | -5.3 | 5.2 | 2.4e-07 | -0.80 | 0.04 | 0.95 | FALSE |
25 | YFS | Blood | TRIM8 | 0.04 | 0.04 | lasso | 6 | 0.05 | 1.2e-15 | -5.4 | 5.5 | 4.7e-08 | -0.80 | 0.03 | 0.97 | FALSE |
26 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ACTR1A | 0.02 | 0.02 | lasso | 5 | 0.02 | 4.6e-03 | -5.4 | 5.4 | 5.4e-08 | -0.98 | 0.02 | 0.79 | FALSE |
27 | The Cancer Genome Atlas | Brain Lower Grade Glioma | SUFU | 0.03 | 0.03 | lasso | 1 | 0.03 | 2.0e-04 | -5.2 | -5.2 | 1.7e-07 | 0.95 | 0.04 | 0.96 | FALSE |
28 | The Cancer Genome Atlas | Prostate Adenocarcinoma | C10orf95 | 0.02 | 0.03 | lasso | 2 | 0.02 | 4.7e-03 | -5.6 | -5.6 | 2.5e-08 | 1.00 | 0.01 | 0.93 | FALSE |