Best TWAS P=1.99e-10 · Best GWAS P=1.39e-15 conditioned to 5.24e-08
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | WBP2NL | 0.28 | 0.25 | enet | 16 | 0.35 | 1.3e-43 | 5.0 | 5.4 | 8.0e-08 | -0.35 | 1.00 | 0.00 | FALSE |
2 | GTEx | Adipose Subcutaneous | CYP2D6 | 0.26 | 0.10 | enet | 34 | 0.20 | 1.2e-16 | -4.2 | -6.3 | 2.7e-10 | 0.45 | 1.00 | 0.00 | TRUE |
3 | GTEx | Adrenal Gland | CYP2D6 | 0.37 | 0.14 | lasso | 12 | 0.16 | 2.3e-06 | -4.2 | -5.3 | 1.2e-07 | 0.41 | 0.97 | 0.00 | FALSE |
4 | GTEx | Artery Aorta | CYP2D6 | 0.24 | 0.14 | lasso | 5 | 0.24 | 1.6e-13 | -4.3 | -5.2 | 2.5e-07 | 0.40 | 1.00 | 0.00 | FALSE |
5 | GTEx | Artery Aorta | APOBEC3G | 0.40 | 0.40 | lasso | 3 | 0.39 | 6.3e-23 | 5.0 | 5.4 | 6.5e-08 | 0.07 | 0.04 | 0.96 | FALSE |
6 | GTEx | Artery Tibial | CYP2D6 | 0.29 | 0.23 | lasso | 6 | 0.28 | 1.5e-22 | 4.5 | -5.1 | 2.7e-07 | 0.37 | 1.00 | 0.00 | FALSE |
7 | GTEx | Brain Cerebellar Hemisphere | CYP2D6 | 0.49 | 0.38 | enet | 16 | 0.49 | 1.6e-14 | -4.2 | -5.2 | 2.6e-07 | 0.40 | 1.00 | 0.00 | FALSE |
8 | GTEx | Brain Cortex | CYP2D6 | 0.51 | 0.33 | lasso | 6 | 0.47 | 1.5e-14 | -4.3 | -5.2 | 2.1e-07 | 0.41 | 1.00 | 0.00 | FALSE |
9 | GTEx | Brain Frontal Cortex BA9 | CYP2D6 | 0.51 | 0.20 | lasso | 5 | 0.34 | 9.0e-10 | 4.5 | -5.3 | 1.1e-07 | 0.39 | 0.92 | 0.05 | FALSE |
10 | GTEx | Brain Frontal Cortex BA9 | SLC25A17 | 0.11 | -0.01 | lasso | 5 | 0.00 | 3.5e-01 | -4.1 | -5.4 | 8.4e-08 | 0.22 | 0.08 | 0.18 | FALSE |
11 | GTEx | Breast Mammary Tissue (Male) | CYP2D6 | 0.34 | -0.01 | lasso | 6 | 0.00 | 3.2e-01 | 4.9 | -5.6 | 2.5e-08 | 0.36 | 0.11 | 0.10 | FALSE |
12 | GTEx | Breast Mammary Tissue (Female) | POLR3H | 0.09 | -0.01 | lasso | 6 | -0.01 | 6.4e-01 | -5.6 | 5.6 | 1.7e-08 | -0.46 | 0.04 | 0.06 | FALSE |
13 | GTEx | Breast Mammary Tissue (Female) | DESI1 | 0.14 | 0.07 | lasso | 4 | 0.11 | 4.2e-04 | -5.6 | 5.4 | 6.9e-08 | -0.45 | 0.08 | 0.12 | FALSE |
14 | GTEx | Cells Transformed fibroblasts | APOBEC3G | 0.24 | 0.20 | enet | 11 | 0.24 | 9.4e-18 | 4.8 | 5.3 | 1.3e-07 | 0.05 | 0.07 | 0.92 | FALSE |
15 | GTEx | Colon Sigmoid | DESI1 | 0.21 | 0.08 | enet | 6 | 0.11 | 1.2e-04 | -5.6 | 5.4 | 6.4e-08 | -0.47 | 0.40 | 0.05 | FALSE |
16 | GTEx | Esophagus Muscularis | CYP2D6 | 0.33 | 0.18 | lasso | 5 | 0.29 | 5.6e-18 | -3.5 | -5.2 | 2.3e-07 | 0.44 | 1.00 | 0.00 | FALSE |
17 | GTEx | Lung | RP5-821D11.7 | 0.08 | 0.02 | enet | 21 | 0.04 | 6.6e-04 | 3.8 | 6.3 | 3.3e-10 | -0.40 | 0.53 | 0.04 | FALSE |
18 | GTEx | Nerve Tibial | CYP2D6 | 0.32 | 0.21 | lasso | 6 | 0.24 | 2.8e-17 | 4.6 | -5.4 | 5.9e-08 | 0.39 | 1.00 | 0.00 | FALSE |
19 | GTEx | Nerve Tibial | SYNGR1 | 0.26 | 0.18 | enet | 27 | 0.21 | 3.6e-15 | -4.4 | -5.2 | 2.4e-07 | 0.05 | 0.18 | 0.81 | FALSE |
20 | GTEx | Nerve Tibial | COX5BP7 | 0.44 | 0.25 | enet | 33 | 0.25 | 1.7e-17 | 3.8 | -5.1 | 3.1e-07 | 0.01 | 0.70 | 0.24 | FALSE |
21 | GTEx | Pituitary | OLA1P1 | 0.31 | 0.10 | enet | 9 | 0.08 | 5.0e-03 | 4.5 | 5.2 | 1.5e-07 | -0.39 | 0.23 | 0.08 | FALSE |
22 | GTEx | Pituitary | APOBEC3G | 0.34 | 0.04 | enet | 11 | 0.11 | 1.2e-03 | 4.8 | 5.8 | 6.8e-09 | 0.03 | 0.02 | 0.83 | TRUE |
23 | GTEx | Skin Sun Exposed Lower leg | APOBEC3G | 0.10 | 0.09 | lasso | 3 | 0.06 | 7.5e-06 | 5.0 | 5.3 | 1.1e-07 | 0.07 | 0.04 | 0.95 | FALSE |
24 | GTEx | Spleen | CCDC134 | 0.23 | 0.00 | enet | 14 | 0.09 | 2.7e-03 | -5.6 | 5.8 | 6.7e-09 | -0.40 | 0.07 | 0.07 | FALSE |
25 | GTEx | Testis | SREBF2 | 0.25 | 0.03 | lasso | 12 | 0.04 | 4.6e-03 | 4.5 | 5.5 | 2.9e-08 | -0.41 | 0.62 | 0.04 | FALSE |
26 | GTEx | Uterus | NAGA | 0.19 | 0.07 | enet | 8 | 0.06 | 2.6e-02 | -4.1 | 5.2 | 1.8e-07 | -0.34 | 0.08 | 0.06 | FALSE |
27 | GTEx | Vagina | APOBEC3G | 0.23 | 0.07 | lasso | 5 | 0.06 | 1.8e-02 | 4.9 | 5.4 | 6.0e-08 | 0.05 | 0.06 | 0.49 | FALSE |
28 | NTR | Blood | SYNGR1 | 0.03 | 0.03 | enet | 6 | 0.03 | 1.0e-10 | 5.0 | 5.3 | 9.7e-08 | 0.08 | 0.04 | 0.96 | TRUE |
29 | The Cancer Genome Atlas | Breast Invasive Carcinoma | TNRC6B | 0.02 | 0.01 | blup | 92 | 0.01 | 2.7e-03 | -5.0 | -5.6 | 2.4e-08 | 0.12 | 0.02 | 0.78 | FALSE |
30 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | CYP2D6 | 0.14 | 0.09 | enet | 2 | 0.14 | 1.3e-07 | 4.5 | -5.2 | 1.7e-07 | 0.38 | 0.00 | 0.91 | FALSE |
31 | The Cancer Genome Atlas | Colon Adenocarcinoma | CYP2D6 | 0.12 | 0.11 | enet | 2 | 0.13 | 7.7e-08 | 4.5 | -5.2 | 1.9e-07 | 0.38 | 0.00 | 0.95 | FALSE |
32 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | WBP2NL | 0.06 | 0.04 | blup | 140 | 0.03 | 9.6e-05 | -5.6 | 6.3 | 3.1e-10 | -0.53 | 0.58 | 0.24 | FALSE |
33 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ADSL | 0.04 | 0.03 | enet | 6 | 0.03 | 1.6e-04 | -6.5 | -5.6 | 2.6e-08 | 0.02 | 0.00 | 0.94 | FALSE |
34 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CYP2D6 | 0.14 | 0.15 | enet | 2 | 0.17 | 1.4e-18 | 4.5 | -5.1 | 2.8e-07 | 0.36 | 0.00 | 0.97 | FALSE |
35 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | WBP2NL | 0.10 | 0.04 | blup | 140 | 0.05 | 1.8e-06 | -4.0 | 6.0 | 1.5e-09 | -0.40 | 0.98 | 0.00 | FALSE |
36 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | CYP2D6 | 0.15 | 0.07 | blup | 2 | 0.15 | 4.0e-09 | 4.5 | -5.2 | 1.7e-07 | 0.39 | 0.00 | 0.96 | FALSE |
37 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CYP2D6 | 0.19 | 0.17 | enet | 2 | 0.26 | 3.6e-29 | -4.3 | -5.2 | 1.8e-07 | 0.40 | 0.00 | 0.93 | FALSE |
38 | The Cancer Genome Atlas | Lung Adenocarcinoma | ADSL | 0.03 | 0.00 | blup | 33 | 0.01 | 8.9e-03 | -6.2 | -5.7 | 1.4e-08 | 0.06 | 0.01 | 0.60 | FALSE |
39 | The Cancer Genome Atlas | Lung Adenocarcinoma | CYP2D6 | 0.12 | 0.13 | enet | 2 | 0.15 | 7.4e-17 | 4.5 | -5.2 | 2.1e-07 | 0.37 | 0.00 | 0.97 | FALSE |
40 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | CYP2D6 | 0.20 | 0.23 | enet | 2 | 0.25 | 3.4e-28 | 4.5 | -5.2 | 2.5e-07 | 0.37 | 0.00 | 0.97 | FALSE |
41 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | ADSL | 0.06 | 0.02 | lasso | 2 | 0.03 | 6.6e-03 | -6.3 | -6.3 | 2.7e-10 | 0.05 | 0.00 | 0.80 | FALSE |
42 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | ADSL | 0.09 | 0.03 | lasso | 3 | 0.01 | 7.7e-02 | -6.5 | -6.4 | 2.0e-10 | 0.11 | 0.00 | 0.76 | TRUE |
43 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | CSDC2 | 0.25 | 0.01 | enet | 11 | 0.06 | 2.3e-03 | -3.1 | -5.5 | 3.7e-08 | 0.21 | 0.00 | 0.00 | TRUE |
44 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | CYP2D6 | 0.19 | 0.13 | enet | 2 | 0.14 | 1.6e-06 | 4.5 | -5.1 | 2.7e-07 | 0.36 | 0.00 | 0.82 | FALSE |
45 | The Cancer Genome Atlas | Prostate Adenocarcinoma | WBP2NL | 0.04 | 0.03 | lasso | 8 | 0.03 | 5.6e-04 | 5.0 | 5.4 | 6.5e-08 | -0.34 | 0.56 | 0.03 | FALSE |
46 | The Cancer Genome Atlas | Soft Tissue Sarcoma | CYP2D6 | 0.11 | 0.09 | blup | 2 | 0.10 | 1.4e-06 | 4.5 | -5.2 | 2.3e-07 | 0.37 | 0.00 | 0.94 | FALSE |
47 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | CYP2D6 | 0.11 | 0.00 | blup | 2 | 0.00 | 2.7e-01 | -4.3 | -5.2 | 2.1e-07 | 0.40 | 0.00 | 0.02 | FALSE |
48 | The Cancer Genome Atlas | Stomach Adenocarcinoma | CYP2D6 | 0.12 | 0.10 | blup | 2 | 0.10 | 6.5e-08 | 4.5 | -5.2 | 2.6e-07 | 0.36 | 0.00 | 0.97 | FALSE |
49 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | CYP2D6 | 0.19 | 0.06 | blup | 2 | 0.10 | 9.6e-04 | 4.5 | -5.2 | 1.7e-07 | 0.39 | 0.00 | 0.16 | FALSE |