Best TWAS P=1.51e-10 · Best GWAS P=3.66e-10 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | SLC2A4 | 0.08 | 0.06 | lasso | 2 | 0.08 | 1.2e-09 | -4.0 | 5.3 | 1.2e-07 | 0.04 | 0.32 | 0.66 | FALSE |
2 | GTEx | Artery Aorta | ACADVL | 0.10 | 0.09 | lasso | 3 | 0.10 | 2.4e-06 | -5.3 | -5.1 | 2.7e-07 | -0.05 | 0.08 | 0.92 | FALSE |
3 | GTEx | Artery Tibial | ACADVL | 0.12 | 0.10 | enet | 3 | 0.10 | 2.7e-08 | -5.1 | -5.2 | 1.6e-07 | -0.04 | 0.08 | 0.92 | FALSE |
4 | GTEx | Colon Transverse | LSMD1 | 0.28 | 0.12 | lasso | 5 | 0.19 | 3.3e-09 | 6.3 | 5.6 | 1.6e-08 | 0.89 | 0.00 | 1.00 | FALSE |
5 | GTEx | Muscle Skeletal | DLG4 | 0.12 | 0.05 | lasso | 4 | 0.05 | 2.3e-05 | -5.3 | 5.6 | 2.2e-08 | 0.03 | 0.06 | 0.94 | FALSE |
6 | GTEx | Skin Sun Exposed Lower leg | DVL2 | 0.10 | 0.03 | lasso | 2 | 0.02 | 1.5e-02 | -5.3 | -5.6 | 2.6e-08 | -0.05 | 0.02 | 0.98 | FALSE |
7 | ROSMAP | Brain Pre-frontal Cortex | YBX2 | 0.11 | 0.10 | bslmm | 442 | 0.10 | 2.5e-12 | -4.8 | -5.3 | 1.3e-07 | -0.10 | 0.47 | 0.52 | FALSE |
8 | ROSMAP | Brain Pre-frontal Cortex | KDM6B | 0.07 | 0.05 | lasso | 4 | 0.04 | 2.7e-06 | 6.2 | -5.4 | 8.4e-08 | -0.95 | 0.00 | 1.00 | FALSE |
9 | ROSMAP | Brain Pre-frontal Cortex | SLC2A4 | 0.08 | 0.08 | enet | 9 | 0.08 | 5.5e-11 | -5.6 | 5.3 | 1.5e-07 | 0.02 | 0.02 | 0.98 | FALSE |
10 | ROSMAP | Brain Pre-frontal Cortex | CLDN7 | 0.07 | 0.06 | lasso | 4 | 0.05 | 3.9e-07 | -5.4 | -5.3 | 1.3e-07 | -0.04 | 0.07 | 0.93 | FALSE |
11 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | EIF5A | 0.05 | 0.04 | blup | 52 | 0.03 | 1.5e-03 | 3.7 | -5.2 | 2.0e-07 | -0.10 | 0.04 | 0.05 | TRUE |
12 | The Cancer Genome Atlas | Colon Adenocarcinoma | CYB5D1 | 0.14 | 0.12 | lasso | 1 | 0.10 | 1.7e-06 | 6.3 | -6.3 | 3.7e-10 | -1.00 | 0.00 | 1.00 | TRUE |
13 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | DULLARD | 0.03 | 0.03 | blup | 42 | 0.03 | 9.3e-05 | -5.4 | 5.2 | 1.6e-07 | 0.06 | 0.06 | 0.91 | FALSE |
14 | The Cancer Genome Atlas | Brain Lower Grade Glioma | C17orf81 | 0.04 | 0.05 | enet | 8 | 0.04 | 1.2e-05 | -5.6 | -6.4 | 1.5e-10 | -0.09 | 0.00 | 1.00 | TRUE |
15 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | DULLARD | 0.07 | 0.02 | blup | 42 | 0.06 | 2.3e-03 | 6.0 | 5.3 | 1.4e-07 | 0.07 | 0.00 | 0.95 | FALSE |