Best TWAS P=6.7e-19 · Best GWAS P=1.47e-19 conditioned to 0.0151
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | AUH | 0.14 | 0.06 | enet | 15 | 0.11 | 1.2e-13 | 2.2 | 5.7 | 1.2e-08 | -0.02 | 0.06 | 0.94 | TRUE |
2 | CommonMind | Brain Pre-frontal Cortex | BICD2 | 0.06 | 0.04 | blup | 424 | 0.04 | 6.9e-06 | 7.3 | 7.0 | 2.2e-12 | 0.86 | 0.07 | 0.93 | FALSE |
3 | GTEx | Artery Aorta | ECM2 | 0.11 | 0.10 | lasso | 10 | 0.09 | 1.1e-05 | 6.0 | 6.5 | 7.1e-11 | 0.79 | 0.30 | 0.69 | FALSE |
4 | GTEx | Artery Aorta | NOL8 | 0.09 | 0.04 | lasso | 9 | 0.02 | 2.3e-02 | -6.1 | 5.6 | 1.9e-08 | 0.30 | 0.65 | 0.02 | FALSE |
5 | GTEx | Artery Tibial | NOL8 | 0.04 | 0.03 | lasso | 4 | 0.03 | 3.5e-03 | -6.5 | 6.4 | 2.0e-10 | 0.36 | 0.49 | 0.02 | FALSE |
6 | GTEx | Brain Caudate basal ganglia | OGN | 0.15 | -0.01 | enet | 18 | 0.02 | 7.7e-02 | -2.8 | -7.3 | 3.1e-13 | -0.56 | 0.04 | 0.61 | FALSE |
7 | GTEx | Brain Cerebellar Hemisphere | IPPK | 0.17 | 0.22 | lasso | 13 | 0.16 | 6.8e-05 | -6.4 | -5.9 | 3.0e-09 | -0.31 | 0.68 | 0.02 | FALSE |
8 | GTEx | Brain Cerebellar Hemisphere | BICD2 | 0.27 | 0.06 | lasso | 9 | 0.04 | 3.9e-02 | 6.0 | 5.8 | 5.0e-09 | 0.71 | 0.08 | 0.37 | FALSE |
9 | GTEx | Brain Cerebellum | ZNF484 | 0.21 | 0.01 | lasso | 9 | 0.01 | 1.7e-01 | 6.3 | 7.0 | 2.6e-12 | 0.79 | 0.08 | 0.29 | FALSE |
10 | GTEx | Cells Transformed fibroblasts | OGN | 0.03 | 0.03 | lasso | 2 | 0.01 | 3.2e-02 | -6.1 | -6.1 | 8.2e-10 | -0.33 | 0.62 | 0.03 | FALSE |
11 | GTEx | Esophagus Mucosa | CENPP | 0.09 | 0.01 | lasso | 5 | 0.02 | 2.1e-02 | 6.0 | -6.4 | 1.2e-10 | -0.74 | 0.17 | 0.65 | FALSE |
12 | GTEx | Esophagus Muscularis | OGN | 0.07 | 0.03 | enet | 13 | 0.02 | 2.0e-02 | -3.1 | -5.3 | 9.5e-08 | -0.23 | 0.47 | 0.04 | FALSE |
13 | GTEx | Heart Left Ventricle | ECM2 | 0.07 | 0.05 | lasso | 3 | 0.02 | 3.1e-02 | 7.4 | 6.6 | 3.7e-11 | 0.75 | 0.06 | 0.77 | FALSE |
14 | GTEx | Liver | ECM2 | 0.16 | 0.18 | enet | 8 | 0.18 | 7.4e-06 | -6.0 | 6.2 | 5.7e-10 | 0.34 | 0.85 | 0.02 | FALSE |
15 | GTEx | Lung | CENPP | 0.30 | 0.24 | lasso | 8 | 0.27 | 1.1e-20 | -3.9 | -5.3 | 1.5e-07 | -0.41 | 1.00 | 0.00 | FALSE |
16 | GTEx | Lung | NOL8 | 0.08 | 0.03 | enet | 15 | 0.04 | 2.3e-04 | -5.5 | 5.2 | 1.9e-07 | 0.29 | 0.88 | 0.00 | FALSE |
17 | GTEx | Muscle Skeletal | OGN | 0.03 | 0.02 | enet | 9 | 0.03 | 3.0e-04 | -6.4 | -6.2 | 4.9e-10 | -0.36 | 0.62 | 0.03 | FALSE |
18 | GTEx | Nerve Tibial | OGN | 0.08 | 0.14 | lasso | 9 | 0.12 | 6.3e-09 | -6.6 | -6.6 | 4.6e-11 | -0.37 | 1.00 | 0.00 | FALSE |
19 | GTEx | Nerve Tibial | ECM2 | 0.08 | 0.02 | lasso | 5 | 0.01 | 1.1e-01 | 5.9 | 6.1 | 1.2e-09 | 0.71 | 0.09 | 0.48 | FALSE |
20 | GTEx | Nerve Tibial | NOL8 | 0.10 | 0.02 | enet | 7 | 0.03 | 4.7e-03 | -5.8 | 5.9 | 2.8e-09 | 0.32 | 0.71 | 0.04 | FALSE |
21 | GTEx | Pituitary | IPPK | 0.16 | 0.07 | lasso | 4 | 0.07 | 8.5e-03 | -5.9 | -8.0 | 9.0e-16 | -0.59 | 0.11 | 0.51 | FALSE |
22 | GTEx | Skin Not Sun Exposed Suprapubic | CENPP | 0.23 | 0.09 | lasso | 11 | 0.07 | 9.6e-05 | 7.0 | -6.1 | 1.3e-09 | -0.62 | 0.69 | 0.14 | FALSE |
23 | GTEx | Skin Sun Exposed Lower leg | IPPK | 0.17 | 0.07 | enet | 8 | 0.07 | 2.7e-06 | 9.0 | -7.8 | 8.0e-15 | -0.90 | 0.01 | 0.99 | FALSE |
24 | GTEx | Skin Sun Exposed Lower leg | CENPP | 0.20 | 0.06 | lasso | 9 | 0.14 | 2.9e-11 | 7.1 | -7.0 | 2.6e-12 | -0.63 | 0.93 | 0.07 | FALSE |
25 | GTEx | Small Intestine Terminal Ileum | CENPP | 0.29 | 0.11 | enet | 11 | 0.10 | 2.9e-03 | -5.9 | -6.2 | 7.2e-10 | -0.46 | 0.21 | 0.34 | FALSE |
26 | GTEx | Spleen | BICD2 | 0.26 | 0.25 | lasso | 9 | 0.24 | 6.4e-07 | 6.1 | 6.1 | 1.0e-09 | 0.76 | 0.53 | 0.33 | FALSE |
27 | GTEx | Spleen | NOL8 | 0.29 | 0.24 | lasso | 2 | 0.19 | 1.1e-05 | -7.4 | 7.3 | 2.3e-13 | 0.46 | 0.64 | 0.09 | FALSE |
28 | GTEx | Testis | NOL8 | 0.19 | 0.24 | lasso | 11 | 0.23 | 1.3e-10 | -6.5 | 6.6 | 5.6e-11 | 0.36 | 1.00 | 0.00 | FALSE |
29 | GTEx | Whole Blood | BICD2 | 0.06 | 0.02 | lasso | 2 | 0.01 | 1.8e-02 | 6.1 | 6.1 | 1.1e-09 | 0.76 | 0.08 | 0.87 | FALSE |
30 | NTR | Blood | CENPP | 0.02 | 0.02 | lasso | 4 | 0.02 | 2.0e-07 | -3.9 | -5.3 | 8.9e-08 | -0.29 | 1.00 | 0.00 | FALSE |
31 | NTR | Blood | IPPK | 0.02 | 0.01 | bslmm | 416 | 0.01 | 9.9e-06 | -6.1 | -6.2 | 4.4e-10 | -0.42 | 0.99 | 0.00 | FALSE |
32 | YFS | Blood | NOL8 | 0.06 | 0.09 | lasso | 17 | 0.10 | 1.5e-29 | -6.5 | 6.0 | 1.7e-09 | 0.34 | 1.00 | 0.00 | FALSE |
33 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | CENPP | 0.08 | 0.00 | lasso | 6 | 0.00 | 1.3e-01 | -3.8 | -5.9 | 3.7e-09 | -0.49 | 0.06 | 0.09 | FALSE |
34 | The Cancer Genome Atlas | Breast Invasive Carcinoma | CENPP | 0.07 | 0.03 | lasso | 5 | 0.06 | 2.1e-11 | 7.1 | -7.9 | 3.6e-15 | -0.69 | 0.15 | 0.85 | FALSE |
35 | The Cancer Genome Atlas | Breast Invasive Carcinoma | OGN | 0.02 | 0.02 | lasso | 1 | 0.02 | 2.7e-04 | -6.6 | -6.6 | 5.6e-11 | -0.37 | 0.47 | 0.35 | FALSE |
36 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | IPPK | 0.06 | 0.03 | blup | 49 | 0.04 | 5.8e-03 | 8.6 | -6.9 | 5.1e-12 | -0.88 | 0.01 | 0.67 | FALSE |
37 | The Cancer Genome Atlas | Colon Adenocarcinoma | CENPP | 0.21 | 0.04 | enet | 16 | 0.10 | 1.9e-06 | 7.0 | -6.8 | 1.3e-11 | -0.62 | 0.02 | 0.94 | FALSE |
38 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | CENPP | 0.06 | 0.02 | blup | 160 | 0.04 | 6.3e-05 | 7.0 | -8.2 | 2.5e-16 | -0.72 | 0.06 | 0.89 | FALSE |
39 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | OGN | 0.02 | 0.01 | blup | 51 | 0.01 | 3.4e-02 | -7.5 | -7.4 | 1.3e-13 | -0.43 | 0.01 | 0.84 | FALSE |
40 | The Cancer Genome Atlas | Brain Lower Grade Glioma | AUH | 0.05 | 0.06 | lasso | 4 | 0.05 | 8.5e-07 | 6.0 | 5.2 | 2.4e-07 | -0.02 | 0.46 | 0.50 | FALSE |
41 | The Cancer Genome Atlas | Brain Lower Grade Glioma | BICD2 | 0.06 | 0.02 | blup | 52 | 0.05 | 2.9e-06 | 7.4 | 6.1 | 1.0e-09 | 0.81 | 0.04 | 0.96 | FALSE |
42 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | OGN | 0.07 | 0.08 | lasso | 1 | 0.06 | 8.0e-04 | -6.2 | -6.2 | 6.1e-10 | -0.32 | 0.22 | 0.15 | FALSE |
43 | The Cancer Genome Atlas | Lung Adenocarcinoma | CENPP | 0.14 | 0.08 | lasso | 5 | 0.07 | 2.9e-08 | -3.9 | -5.3 | 1.3e-07 | -0.41 | 1.00 | 0.00 | FALSE |
44 | The Cancer Genome Atlas | Lung Adenocarcinoma | ECM2 | 0.10 | 0.04 | lasso | 2 | 0.04 | 4.2e-05 | 8.7 | 8.2 | 1.8e-16 | 0.90 | 0.00 | 0.99 | FALSE |
45 | The Cancer Genome Atlas | Lung Adenocarcinoma | OGN | 0.07 | 0.12 | blup | 52 | 0.14 | 1.2e-15 | -6.2 | -6.9 | 5.1e-12 | -0.38 | 0.94 | 0.06 | FALSE |
46 | The Cancer Genome Atlas | Lung Adenocarcinoma | OMD | 0.04 | 0.06 | lasso | 3 | 0.05 | 1.1e-06 | -6.2 | -6.2 | 6.6e-10 | -0.32 | 0.91 | 0.06 | FALSE |
47 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | CENPP | 0.06 | 0.04 | blup | 160 | 0.05 | 5.6e-06 | 7.0 | -8.2 | 1.9e-16 | -0.70 | 0.24 | 0.70 | FALSE |
48 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | OGN | 0.02 | 0.02 | blup | 52 | 0.02 | 2.8e-03 | 7.3 | -7.2 | 5.0e-13 | -0.41 | 0.02 | 0.94 | FALSE |
49 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | CENPP | 0.10 | 0.01 | blup | 161 | 0.04 | 6.3e-04 | -1.3 | -6.1 | 8.4e-10 | -0.52 | 0.22 | 0.24 | FALSE |
50 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | IPPK | 0.03 | 0.02 | blup | 51 | 0.01 | 3.2e-02 | 8.7 | -6.9 | 4.2e-12 | -0.87 | 0.03 | 0.64 | FALSE |
51 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | OGN | 0.05 | 0.02 | blup | 52 | 0.03 | 2.4e-02 | 7.3 | -7.5 | 6.5e-14 | -0.44 | 0.02 | 0.80 | FALSE |
52 | The Cancer Genome Atlas | Stomach Adenocarcinoma | CENPP | 0.14 | 0.03 | blup | 160 | 0.04 | 6.7e-04 | 7.1 | -5.5 | 3.3e-08 | -0.54 | 0.32 | 0.28 | FALSE |
53 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | CENPP | 0.19 | 0.09 | blup | 158 | 0.08 | 7.1e-04 | 7.0 | -5.5 | 3.1e-08 | -0.66 | 0.04 | 0.45 | FALSE |
54 | The Cancer Genome Atlas | Thyroid Carcinoma | CENPP | 0.22 | 0.15 | blup | 158 | 0.19 | 3.3e-18 | -3.6 | -5.3 | 1.5e-07 | -0.36 | 1.00 | 0.00 | FALSE |
55 | The Cancer Genome Atlas | Thyroid Carcinoma | IPPK | 0.03 | 0.04 | blup | 50 | 0.04 | 6.7e-05 | 8.6 | -8.9 | 6.7e-19 | -0.94 | 0.01 | 0.98 | TRUE |
56 | The Cancer Genome Atlas | Thyroid Carcinoma | NOL8 | 0.02 | 0.01 | blup | 38 | 0.02 | 7.3e-03 | -7.5 | 7.4 | 1.6e-13 | 0.43 | 0.01 | 0.86 | FALSE |