Best TWAS P=3.69e-35 · Best GWAS P=4.66e-32 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | SCAPER | 0.10 | 0.15 | blup | 414 | 0.16 | 1.4e-18 | -5.27 | -6.6 | 3.6e-11 | 0.23 | 1.00 | 0.00 | FALSE |
2 | GTEx | Adipose Subcutaneous | RCN2 | 0.13 | 0.00 | enet | 19 | 0.00 | 1.3e-01 | -2.32 | 5.9 | 2.8e-09 | -0.30 | 0.14 | 0.04 | FALSE |
3 | GTEx | Adipose Subcutaneous | PSTPIP1 | 0.07 | 0.05 | lasso | 3 | 0.03 | 1.0e-03 | 7.32 | 7.0 | 2.4e-12 | -0.31 | 0.71 | 0.02 | FALSE |
4 | GTEx | Adipose Subcutaneous | PEAK1 | 0.05 | 0.03 | lasso | 5 | 0.02 | 8.6e-03 | 6.12 | -5.8 | 7.4e-09 | 0.32 | 0.30 | 0.04 | FALSE |
5 | GTEx | Adipose Subcutaneous | RP11-797A18.4 | 0.19 | 0.12 | lasso | 8 | 0.16 | 2.1e-13 | 2.70 | 7.8 | 4.8e-15 | -0.81 | 0.49 | 0.51 | FALSE |
6 | GTEx | Adipose Visceral Omentum | SCAPER | 0.19 | 0.16 | lasso | 8 | 0.18 | 1.6e-09 | -4.59 | -5.4 | 5.7e-08 | 0.09 | 1.00 | 0.00 | FALSE |
7 | GTEx | Adipose Visceral Omentum | RP11-797A18.4 | 0.06 | 0.05 | lasso | 3 | 0.06 | 4.1e-04 | -11.53 | 11.1 | 1.3e-28 | -0.96 | 0.01 | 0.97 | FALSE |
8 | GTEx | Adrenal Gland | SCAPER | 0.31 | 0.41 | lasso | 7 | 0.41 | 5.7e-16 | -4.62 | -5.3 | 9.5e-08 | 0.11 | 1.00 | 0.00 | FALSE |
9 | GTEx | Adrenal Gland | RP11-797A18.4 | 0.13 | 0.04 | enet | 18 | 0.11 | 1.1e-04 | 2.72 | 7.1 | 1.1e-12 | -0.74 | 0.03 | 0.85 | FALSE |
10 | GTEx | Artery Aorta | SCAPER | 0.16 | 0.17 | lasso | 8 | 0.19 | 1.7e-10 | -4.77 | -5.8 | 6.9e-09 | 0.09 | 1.00 | 0.00 | FALSE |
11 | GTEx | Artery Aorta | RP11-797A18.4 | 0.13 | 0.11 | enet | 17 | 0.12 | 2.3e-07 | 2.54 | 7.3 | 2.8e-13 | -0.78 | 0.10 | 0.90 | FALSE |
12 | GTEx | Artery Coronary | RP11-797A18.3 | 0.12 | 0.03 | lasso | 10 | 0.01 | 1.1e-01 | 2.56 | 8.2 | 2.4e-16 | -0.80 | 0.04 | 0.49 | FALSE |
13 | GTEx | Artery Tibial | SCAPER | 0.40 | 0.16 | lasso | 10 | 0.37 | 6.0e-30 | -0.97 | -6.2 | 4.5e-10 | 0.20 | 1.00 | 0.00 | FALSE |
14 | GTEx | Artery Tibial | TSPAN3 | 0.14 | 0.07 | lasso | 5 | 0.10 | 1.6e-08 | -11.10 | 11.7 | 2.0e-31 | -0.85 | 0.01 | 0.99 | FALSE |
15 | GTEx | Artery Tibial | LINGO1 | 0.08 | 0.04 | lasso | 5 | 0.03 | 2.7e-03 | 6.06 | 6.0 | 1.7e-09 | -0.39 | 0.24 | 0.18 | FALSE |
16 | GTEx | Artery Tibial | PEAK1 | 0.07 | 0.00 | lasso | 8 | 0.01 | 9.5e-02 | 7.27 | -5.3 | 1.4e-07 | 0.10 | 0.24 | 0.03 | FALSE |
17 | GTEx | Artery Tibial | RP11-797A18.4 | 0.14 | 0.03 | enet | 25 | 0.09 | 2.3e-07 | -11.53 | 10.8 | 2.1e-27 | -0.76 | 0.01 | 0.99 | TRUE |
18 | GTEx | Brain Caudate basal ganglia | PSTPIP1 | 0.22 | 0.12 | lasso | 9 | 0.13 | 1.4e-04 | -11.71 | -9.9 | 4.6e-23 | 0.91 | 0.02 | 0.95 | FALSE |
19 | GTEx | Brain Caudate basal ganglia | RP11-797A18.4 | 0.21 | 0.14 | lasso | 5 | 0.12 | 2.9e-04 | -11.47 | 9.2 | 5.5e-20 | -0.87 | 0.02 | 0.96 | FALSE |
20 | GTEx | Brain Cerebellar Hemisphere | RP11-797A18.3 | 0.14 | 0.03 | lasso | 6 | 0.02 | 7.9e-02 | 2.49 | 6.8 | 9.4e-12 | -0.76 | 0.02 | 0.70 | FALSE |
21 | GTEx | Brain Cerebellar Hemisphere | RP11-797A18.4 | 0.14 | 0.12 | enet | 10 | 0.12 | 6.4e-04 | -8.46 | 10.6 | 2.3e-26 | -0.90 | 0.01 | 0.92 | FALSE |
22 | GTEx | Brain Cerebellum | HMG20A | 0.14 | 0.03 | enet | 7 | 0.10 | 6.4e-04 | -11.71 | 6.2 | 6.3e-10 | -0.74 | 0.02 | 0.88 | FALSE |
23 | GTEx | Brain Cerebellum | SCAPER | 0.30 | 0.10 | lasso | 3 | 0.10 | 7.6e-04 | -4.78 | -5.9 | 3.5e-09 | 0.16 | 0.70 | 0.02 | FALSE |
24 | GTEx | Brain Cerebellum | PEAK1 | 0.27 | 0.04 | lasso | 4 | 0.14 | 7.2e-05 | 7.33 | -6.2 | 5.8e-10 | 0.15 | 0.22 | 0.05 | TRUE |
25 | GTEx | Brain Cerebellum | RP11-797A18.4 | 0.29 | 0.20 | lasso | 9 | 0.25 | 4.0e-08 | -11.71 | 10.6 | 1.8e-26 | -0.89 | 0.01 | 0.98 | FALSE |
26 | GTEx | Brain Cortex | RP11-797A18.4 | 0.47 | 0.28 | enet | 14 | 0.34 | 3.3e-10 | -11.79 | 10.9 | 1.1e-27 | -0.94 | 0.01 | 0.99 | FALSE |
27 | GTEx | Brain Frontal Cortex BA9 | RP11-797A18.4 | 0.35 | 0.35 | lasso | 5 | 0.35 | 4.8e-10 | -11.59 | 11.4 | 3.5e-30 | -0.98 | 0.02 | 0.98 | FALSE |
28 | GTEx | Brain Hippocampus | PEAK1 | 0.23 | 0.05 | lasso | 6 | 0.02 | 9.9e-02 | 6.12 | -6.2 | 5.6e-10 | 0.33 | 0.13 | 0.10 | FALSE |
29 | GTEx | Brain Hypothalamus | LINGO1 | 0.18 | 0.05 | enet | 18 | 0.08 | 7.9e-03 | 7.42 | -5.6 | 2.1e-08 | 0.10 | 0.17 | 0.05 | FALSE |
30 | GTEx | Brain Hypothalamus | RP11-797A18.4 | 0.21 | 0.18 | lasso | 7 | 0.22 | 7.6e-06 | -11.71 | 11.2 | 6.6e-29 | -0.96 | 0.01 | 0.98 | FALSE |
31 | GTEx | Brain Nucleus accumbens basal ganglia | PEAK1 | 0.17 | 0.12 | lasso | 4 | 0.08 | 2.8e-03 | 7.41 | -6.9 | 4.5e-12 | 0.33 | 0.27 | 0.06 | TRUE |
32 | GTEx | Brain Nucleus accumbens basal ganglia | RP11-797A18.4 | 0.12 | 0.22 | lasso | 1 | 0.17 | 3.1e-05 | -11.53 | 11.5 | 9.7e-31 | -0.99 | 0.02 | 0.90 | FALSE |
33 | GTEx | Brain Putamen basal ganglia | RCN2 | 0.15 | 0.05 | enet | 14 | 0.02 | 8.9e-02 | 9.27 | 9.4 | 5.2e-21 | -0.34 | 0.15 | 0.19 | FALSE |
34 | GTEx | Brain Putamen basal ganglia | RP11-797A18.4 | 0.27 | 0.06 | lasso | 5 | 0.06 | 1.7e-02 | -11.47 | 12.4 | 3.7e-35 | -0.92 | 0.02 | 0.65 | TRUE |
35 | GTEx | Cells EBV-transformed lymphocytes | PSTPIP1 | 0.13 | 0.04 | enet | 13 | 0.10 | 4.0e-04 | -4.90 | 10.1 | 6.3e-24 | -0.72 | 0.11 | 0.64 | TRUE |
36 | GTEx | Cells EBV-transformed lymphocytes | TSPAN3 | 0.26 | 0.14 | lasso | 6 | 0.12 | 8.2e-05 | 7.27 | 6.0 | 1.8e-09 | -0.48 | 0.10 | 0.49 | FALSE |
37 | GTEx | Cells EBV-transformed lymphocytes | RP11-797A18.4 | 0.16 | 0.08 | lasso | 6 | 0.14 | 2.7e-05 | 2.74 | 7.1 | 1.2e-12 | -0.76 | 0.04 | 0.91 | FALSE |
38 | GTEx | Cells Transformed fibroblasts | TSPAN3 | 0.17 | 0.16 | lasso | 3 | 0.17 | 1.7e-12 | -11.10 | 9.9 | 3.0e-23 | -0.89 | 0.02 | 0.98 | FALSE |
39 | GTEx | Cells Transformed fibroblasts | RP11-797A18.4 | 0.12 | 0.11 | lasso | 8 | 0.12 | 4.0e-09 | -11.40 | 11.4 | 5.0e-30 | -0.98 | 0.01 | 0.99 | FALSE |
40 | GTEx | Cells Transformed fibroblasts | RP11-797A18.6 | 0.07 | 0.06 | lasso | 4 | 0.06 | 2.2e-05 | -11.10 | 10.1 | 3.9e-24 | -0.83 | 0.02 | 0.97 | FALSE |
41 | GTEx | Colon Sigmoid | SCAPER | 0.19 | 0.20 | enet | 14 | 0.26 | 1.4e-09 | -4.75 | -8.0 | 1.5e-15 | 0.26 | 1.00 | 0.00 | FALSE |
42 | GTEx | Colon Transverse | SCAPER | 0.23 | 0.22 | enet | 30 | 0.26 | 1.9e-12 | -4.75 | -5.6 | 2.2e-08 | 0.16 | 1.00 | 0.00 | FALSE |
43 | GTEx | Colon Transverse | RP11-797A18.4 | 0.15 | 0.03 | lasso | 5 | 0.05 | 3.1e-03 | 2.75 | 6.4 | 1.6e-10 | -0.71 | 0.05 | 0.87 | FALSE |
44 | GTEx | Esophagus Gastroesophageal Junction | RP11-797A18.4 | 0.14 | 0.11 | enet | 10 | 0.15 | 6.0e-06 | -8.46 | 9.0 | 1.9e-19 | -0.82 | 0.02 | 0.97 | FALSE |
45 | GTEx | Esophagus Mucosa | RP11-797A18.4 | 0.14 | 0.05 | enet | 13 | 0.08 | 7.5e-06 | 2.54 | 5.6 | 2.1e-08 | -0.70 | 0.03 | 0.96 | FALSE |
46 | GTEx | Esophagus Muscularis | SCAPER | 0.15 | 0.19 | lasso | 9 | 0.23 | 7.7e-14 | -4.71 | -5.2 | 1.7e-07 | 0.08 | 1.00 | 0.00 | FALSE |
47 | GTEx | Esophagus Muscularis | RP11-797A18.4 | 0.07 | 0.09 | lasso | 3 | 0.09 | 6.3e-06 | -11.10 | 11.4 | 4.5e-30 | -0.96 | 0.01 | 0.98 | FALSE |
48 | GTEx | Heart Atrial Appendage | SCAPER | 0.16 | 0.04 | lasso | 5 | 0.05 | 2.3e-03 | -7.15 | -5.9 | 3.8e-09 | 0.10 | 0.36 | 0.06 | FALSE |
49 | GTEx | Heart Atrial Appendage | RP11-797A18.4 | 0.16 | 0.06 | enet | 17 | 0.11 | 1.5e-05 | -11.53 | 8.8 | 1.8e-18 | -0.84 | 0.02 | 0.98 | FALSE |
50 | GTEx | Heart Left Ventricle | SCAPER | 0.08 | 0.05 | lasso | 5 | 0.07 | 1.2e-04 | -6.39 | -7.8 | 6.4e-15 | 0.29 | 0.36 | 0.05 | FALSE |
51 | GTEx | Heart Left Ventricle | RP11-797A18.4 | 0.16 | 0.09 | enet | 12 | 0.08 | 3.3e-05 | -11.10 | 10.3 | 9.5e-25 | -0.95 | 0.01 | 0.99 | FALSE |
52 | GTEx | Liver | PSMA4 | 0.18 | 0.14 | lasso | 1 | 0.11 | 6.5e-04 | -6.16 | -6.2 | 7.3e-10 | 0.02 | 0.02 | 0.90 | FALSE |
53 | GTEx | Lung | SCAPER | 0.23 | 0.38 | lasso | 8 | 0.40 | 1.8e-32 | -5.23 | -6.8 | 1.0e-11 | 0.16 | 1.00 | 0.00 | FALSE |
54 | GTEx | Lung | RP11-797A18.3 | 0.05 | 0.03 | enet | 8 | 0.04 | 3.4e-04 | 2.74 | 8.1 | 6.1e-16 | -0.83 | 0.03 | 0.92 | FALSE |
55 | GTEx | Lung | RP11-797A18.4 | 0.19 | 0.09 | enet | 21 | 0.17 | 3.5e-13 | -11.53 | 9.6 | 5.2e-22 | -0.82 | 0.01 | 0.99 | FALSE |
56 | GTEx | Muscle Skeletal | ETFA | 0.04 | 0.03 | enet | 21 | 0.02 | 2.9e-03 | -8.10 | 7.5 | 6.6e-14 | -0.26 | 0.08 | 0.86 | FALSE |
57 | GTEx | Muscle Skeletal | RP11-797A18.4 | 0.14 | 0.14 | lasso | 6 | 0.18 | 6.6e-17 | -11.40 | 10.5 | 1.1e-25 | -0.93 | 0.04 | 0.96 | FALSE |
58 | GTEx | Nerve Tibial | ETFA | 0.11 | 0.03 | lasso | 2 | 0.02 | 1.2e-02 | -5.52 | 5.8 | 8.3e-09 | -0.27 | 0.08 | 0.08 | FALSE |
59 | GTEx | Nerve Tibial | SCAPER | 0.16 | 0.22 | enet | 14 | 0.28 | 1.3e-19 | -4.58 | -6.4 | 1.3e-10 | 0.15 | 1.00 | 0.00 | FALSE |
60 | GTEx | Nerve Tibial | TSPAN3 | 0.13 | 0.08 | lasso | 2 | 0.07 | 9.0e-06 | -11.10 | 11.7 | 2.0e-31 | -0.99 | 0.00 | 1.00 | FALSE |
61 | GTEx | Ovary | SCAPER | 0.18 | 0.17 | lasso | 5 | 0.15 | 1.9e-04 | -4.66 | -5.2 | 1.9e-07 | 0.10 | 0.32 | 0.09 | FALSE |
62 | GTEx | Ovary | RP11-797A18.6 | 0.21 | 0.04 | enet | 15 | 0.13 | 3.7e-04 | -11.10 | 8.8 | 2.2e-18 | -0.76 | 0.02 | 0.77 | FALSE |
63 | GTEx | Pituitary | SCAPER | 0.22 | 0.24 | lasso | 4 | 0.25 | 4.5e-07 | -4.90 | -5.4 | 6.0e-08 | 0.05 | 0.85 | 0.01 | FALSE |
64 | GTEx | Skin Not Sun Exposed Suprapubic | RP11-797A18.3 | 0.15 | 0.08 | lasso | 3 | 0.09 | 1.2e-05 | 2.74 | 8.5 | 1.6e-17 | -0.81 | 0.04 | 0.95 | FALSE |
65 | GTEx | Skin Not Sun Exposed Suprapubic | RP11-797A18.4 | 0.19 | 0.10 | enet | 31 | 0.15 | 8.0e-09 | -11.79 | 10.6 | 1.9e-26 | -0.78 | 0.01 | 0.99 | FALSE |
66 | GTEx | Skin Sun Exposed Lower leg | TSPAN3 | 0.11 | 0.03 | enet | 8 | 0.10 | 2.5e-08 | 7.27 | 9.7 | 2.6e-22 | -0.70 | 0.01 | 0.98 | FALSE |
67 | GTEx | Skin Sun Exposed Lower leg | RP11-797A18.4 | 0.16 | 0.08 | enet | 23 | 0.09 | 1.3e-07 | -11.47 | 9.4 | 4.7e-21 | -0.78 | 0.02 | 0.98 | FALSE |
68 | GTEx | Spleen | SCAPER | 0.39 | 0.42 | lasso | 8 | 0.46 | 1.6e-13 | -5.27 | -5.7 | 1.2e-08 | 0.07 | 1.00 | 0.00 | FALSE |
69 | GTEx | Testis | PSTPIP1 | 0.10 | 0.03 | lasso | 3 | 0.02 | 4.1e-02 | -11.79 | 11.8 | 4.2e-32 | -1.00 | 0.01 | 0.97 | FALSE |
70 | GTEx | Testis | SCAPER | 0.12 | 0.14 | lasso | 4 | 0.13 | 1.7e-06 | -9.86 | -9.9 | 3.7e-23 | 0.35 | 0.93 | 0.02 | FALSE |
71 | GTEx | Testis | TSPAN3 | 0.19 | 0.05 | lasso | 7 | 0.06 | 1.6e-03 | -11.53 | 9.1 | 8.6e-20 | -0.85 | 0.01 | 0.97 | FALSE |
72 | GTEx | Testis | RP11-797A18.6 | 0.09 | -0.01 | enet | 14 | 0.01 | 1.7e-01 | 2.08 | 5.5 | 4.1e-08 | -0.51 | 0.04 | 0.49 | FALSE |
73 | GTEx | Thyroid | SCAPER | 0.20 | 0.27 | enet | 25 | 0.29 | 1.3e-22 | -5.27 | -6.4 | 1.2e-10 | 0.15 | 1.00 | 0.00 | FALSE |
74 | GTEx | Thyroid | PEAK1 | 0.11 | 0.05 | lasso | 10 | 0.08 | 9.6e-07 | 4.22 | -5.9 | 3.0e-09 | 0.22 | 0.98 | 0.00 | FALSE |
75 | GTEx | Uterus | RP11-797A18.4 | 0.26 | 0.11 | enet | 12 | 0.16 | 4.0e-04 | -9.60 | 7.3 | 2.4e-13 | -0.76 | 0.07 | 0.42 | FALSE |
76 | GTEx | Whole Blood | TSPAN3 | 0.05 | 0.04 | lasso | 2 | 0.03 | 1.8e-03 | 7.27 | 8.3 | 1.0e-16 | -0.46 | 0.06 | 0.64 | TRUE |
77 | GTEx | Whole Blood | RP11-797A18.3 | 0.08 | 0.05 | lasso | 7 | 0.05 | 4.4e-05 | 2.74 | 5.7 | 1.1e-08 | -0.69 | 0.18 | 0.80 | FALSE |
78 | GTEx | Whole Blood | RP11-797A18.4 | 0.21 | 0.18 | enet | 26 | 0.19 | 1.6e-17 | 2.74 | 5.9 | 3.3e-09 | -0.67 | 1.00 | 0.00 | TRUE |
79 | GTEx | Whole Blood | RP11-797A18.6 | 0.04 | 0.02 | enet | 8 | 0.03 | 4.9e-04 | 2.56 | 6.5 | 6.2e-11 | -0.73 | 0.18 | 0.24 | FALSE |
80 | METSIM | Adipose | PSTPIP1 | 0.04 | 0.04 | lasso | 3 | 0.04 | 2.3e-06 | 7.50 | 9.3 | 1.1e-20 | -0.50 | 0.83 | 0.15 | FALSE |
81 | METSIM | Adipose | SCAPER | 0.09 | 0.17 | lasso | 10 | 0.16 | 1.3e-22 | -4.74 | -5.4 | 6.1e-08 | 0.11 | 1.00 | 0.00 | FALSE |
82 | METSIM | Adipose | SNX33 | 0.10 | 0.05 | lasso | 7 | 0.05 | 6.1e-08 | -4.01 | -6.8 | 1.1e-11 | 0.17 | 0.78 | 0.22 | TRUE |
83 | METSIM | Adipose | UBE2Q2 | 0.14 | 0.04 | bslmm | 293 | 0.09 | 3.7e-13 | -2.84 | 5.4 | 7.4e-08 | -0.21 | 0.96 | 0.01 | TRUE |
84 | NTR | Blood | SGK269 | 0.02 | 0.01 | enet | 28 | 0.02 | 8.7e-08 | -3.48 | -5.5 | 3.8e-08 | 0.14 | 1.00 | 0.00 | FALSE |
85 | NTR | Blood | TSPAN3 | 0.07 | 0.08 | lasso | 9 | 0.09 | 5.1e-27 | -11.53 | 10.2 | 2.4e-24 | -0.93 | 0.02 | 0.98 | FALSE |
86 | YFS | Blood | PSMA4 | 0.08 | 0.08 | lasso | 10 | 0.11 | 8.3e-35 | -5.94 | -5.9 | 4.2e-09 | 0.03 | 0.16 | 0.84 | FALSE |
87 | YFS | Blood | TSPAN3 | 0.18 | 0.14 | bslmm | 256 | 0.18 | 5.9e-57 | 7.23 | 9.4 | 4.7e-21 | -0.54 | 1.00 | 0.00 | FALSE |
88 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | TSPAN3 | 0.05 | 0.00 | enet | 7 | 0.02 | 9.7e-03 | -11.53 | 9.6 | 8.3e-22 | -0.79 | 0.01 | 0.82 | FALSE |
89 | The Cancer Genome Atlas | Breast Invasive Carcinoma | C15orf27 | 0.03 | 0.00 | blup | 98 | 0.00 | 3.5e-01 | -6.66 | 7.3 | 2.2e-13 | -0.33 | 0.01 | 0.59 | FALSE |
90 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ETFA | 0.06 | 0.02 | lasso | 5 | 0.03 | 2.0e-07 | -5.64 | 7.6 | 2.1e-14 | -0.35 | 0.09 | 0.91 | FALSE |
91 | The Cancer Genome Atlas | Breast Invasive Carcinoma | RCN2 | 0.16 | 0.04 | enet | 7 | 0.03 | 2.1e-07 | -9.35 | 9.0 | 2.0e-19 | -0.35 | 0.00 | 1.00 | FALSE |
92 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SCAPER | 0.05 | 0.02 | lasso | 3 | 0.02 | 7.5e-05 | -6.86 | 7.1 | 1.3e-12 | -0.42 | 0.56 | 0.13 | FALSE |
93 | The Cancer Genome Atlas | Breast Invasive Carcinoma | TSPAN3 | 0.03 | 0.01 | blup | 43 | 0.01 | 8.2e-03 | -8.76 | 11.0 | 4.4e-28 | -0.78 | 0.03 | 0.65 | FALSE |
94 | The Cancer Genome Atlas | Colon Adenocarcinoma | RCN2 | 0.11 | 0.00 | blup | 39 | 0.01 | 4.6e-02 | -8.89 | 9.1 | 1.4e-19 | -0.40 | 0.00 | 0.46 | FALSE |
95 | The Cancer Genome Atlas | Esophageal Carcinoma | CHRNA3 | 0.24 | 0.15 | enet | 5 | 0.16 | 6.5e-06 | -6.16 | 6.3 | 3.5e-10 | 0.00 | 0.01 | 0.97 | FALSE |
96 | The Cancer Genome Atlas | Esophageal Carcinoma | CHRNA5 | 0.17 | 0.15 | lasso | 4 | 0.14 | 3.1e-05 | -6.16 | 6.6 | 4.8e-11 | -0.02 | 0.01 | 0.97 | TRUE |
97 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ETFA | 0.17 | 0.01 | enet | 16 | 0.05 | 3.9e-06 | -5.49 | 6.9 | 4.6e-12 | -0.24 | 0.01 | 0.94 | FALSE |
98 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | RCN2 | 0.30 | 0.03 | enet | 4 | 0.03 | 3.6e-04 | -9.15 | 9.4 | 7.4e-21 | -0.36 | 0.00 | 0.97 | FALSE |
99 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | SCAPER | 0.11 | 0.01 | lasso | 3 | 0.01 | 2.2e-02 | -6.86 | 9.3 | 9.2e-21 | -0.46 | 0.03 | 0.62 | FALSE |
100 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | TSPAN3 | 0.05 | 0.01 | blup | 43 | 0.01 | 1.5e-02 | -11.40 | 10.0 | 1.5e-23 | -0.77 | 0.01 | 0.43 | FALSE |
101 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PSTPIP1 | 0.07 | 0.02 | lasso | 3 | 0.02 | 8.9e-04 | 7.73 | 8.3 | 7.2e-17 | -0.45 | 0.21 | 0.33 | FALSE |
102 | The Cancer Genome Atlas | Brain Lower Grade Glioma | RCN2 | 0.18 | 0.00 | blup | 39 | 0.01 | 4.6e-02 | -9.15 | 7.3 | 3.9e-13 | -0.31 | 0.00 | 0.69 | FALSE |
103 | The Cancer Genome Atlas | Brain Lower Grade Glioma | SCAPER | 0.12 | 0.01 | blup | 151 | 0.01 | 1.4e-02 | -7.08 | 7.4 | 1.8e-13 | -0.18 | 0.06 | 0.48 | FALSE |
104 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | PSMA4 | 0.08 | 0.02 | blup | 40 | 0.03 | 1.1e-02 | 4.60 | 5.3 | 1.2e-07 | -0.07 | 0.04 | 0.23 | FALSE |
105 | The Cancer Genome Atlas | Lung Adenocarcinoma | ETFA | 0.09 | 0.01 | enet | 7 | 0.03 | 3.2e-04 | 5.16 | 8.2 | 1.7e-16 | -0.34 | 0.01 | 0.94 | FALSE |
106 | The Cancer Genome Atlas | Lung Adenocarcinoma | RCN2 | 0.15 | 0.01 | blup | 39 | 0.01 | 2.9e-02 | 9.27 | 8.7 | 3.2e-18 | -0.40 | 0.01 | 0.73 | FALSE |
107 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | ETFA | 0.12 | 0.01 | lasso | 2 | 0.02 | 1.4e-03 | -9.86 | 9.3 | 2.0e-20 | -0.33 | 0.00 | 0.95 | FALSE |
108 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | RCN2 | 0.16 | 0.02 | enet | 2 | 0.00 | 1.0e-01 | -9.35 | 9.4 | 7.8e-21 | -0.35 | 0.00 | 0.92 | FALSE |
109 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | SCAPER | 0.06 | 0.00 | enet | 5 | 0.00 | 3.4e-01 | -6.60 | 6.8 | 1.2e-11 | -0.37 | 0.02 | 0.12 | TRUE |
110 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | ETFA | 0.26 | 0.03 | blup | 67 | 0.03 | 6.9e-03 | -9.86 | 8.7 | 2.3e-18 | -0.34 | 0.00 | 0.99 | FALSE |
111 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | RCN2 | 0.15 | 0.04 | lasso | 4 | 0.02 | 1.6e-02 | -6.34 | 8.1 | 7.4e-16 | -0.44 | 0.01 | 0.36 | FALSE |
112 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | RCN2 | 0.25 | 0.05 | lasso | 4 | 0.03 | 1.6e-02 | -5.12 | 5.7 | 1.0e-08 | -0.39 | 0.01 | 0.16 | FALSE |
113 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | CHRNA5 | 0.15 | 0.07 | blup | 50 | 0.09 | 2.5e-04 | 4.91 | 5.7 | 9.5e-09 | -0.04 | 0.14 | 0.64 | FALSE |
114 | The Cancer Genome Atlas | Rectum Adenocarcinoma | ETFA | 0.32 | -0.01 | blup | 67 | 0.00 | 4.0e-01 | -4.22 | 6.8 | 1.3e-11 | -0.27 | 0.01 | 0.29 | FALSE |
115 | The Cancer Genome Atlas | Soft Tissue Sarcoma | RCN2 | 0.15 | 0.00 | enet | 9 | 0.02 | 1.5e-02 | 9.27 | 6.5 | 7.3e-11 | -0.28 | 0.00 | 0.49 | FALSE |
116 | The Cancer Genome Atlas | Stomach Adenocarcinoma | ETFA | 0.08 | 0.00 | blup | 67 | 0.01 | 6.1e-02 | -8.98 | 9.1 | 1.4e-19 | -0.39 | 0.01 | 0.31 | FALSE |
117 | The Cancer Genome Atlas | Stomach Adenocarcinoma | SCAPER | 0.18 | 0.01 | blup | 151 | 0.02 | 2.2e-02 | -6.60 | 5.4 | 7.6e-08 | -0.35 | 0.20 | 0.05 | FALSE |
118 | The Cancer Genome Atlas | Thyroid Carcinoma | PSTPIP1 | 0.07 | 0.01 | enet | 8 | 0.03 | 4.8e-04 | -5.17 | -6.0 | 2.3e-09 | 0.50 | 0.02 | 0.11 | FALSE |
119 | The Cancer Genome Atlas | Thyroid Carcinoma | SGK269 | 0.08 | 0.01 | blup | 59 | 0.04 | 5.2e-05 | -6.61 | -7.9 | 3.1e-15 | 0.35 | 0.15 | 0.26 | FALSE |
120 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | ETFA | 0.20 | 0.00 | blup | 67 | 0.02 | 9.4e-02 | 5.16 | 6.1 | 1.2e-09 | -0.28 | 0.02 | 0.16 | FALSE |