Best TWAS P=5.54e-10 · Best GWAS P=8.79e-10 conditioned to 0.558
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Visceral Omentum | DNAJC9-AS1 | 0.17 | 0.00 | enet | 50 | 0.02 | 1.9e-02 | 3.0 | -5.7 | 1.4e-08 | -0.06 | 0.05 | 0.04 | TRUE |
2 | GTEx | Cells Transformed fibroblasts | CAMK2G | 0.06 | 0.04 | enet | 10 | 0.06 | 2.2e-05 | 6.1 | 5.9 | 3.9e-09 | 0.94 | 0.01 | 0.98 | FALSE |
3 | GTEx | Esophagus Mucosa | CAMK2G | 0.10 | 0.04 | lasso | 3 | 0.06 | 4.0e-05 | 5.1 | 5.2 | 1.7e-07 | 0.89 | 0.06 | 0.88 | FALSE |
4 | GTEx | Prostate | RP11-574K11.5 | 0.29 | 0.02 | enet | 43 | 0.00 | 2.4e-01 | 5.5 | -6.1 | 1.1e-09 | -0.47 | 0.02 | 0.39 | FALSE |
5 | ROSMAP | Brain Pre-frontal Cortex | MYOZ1 | 0.04 | 0.01 | blup | 235 | 0.02 | 2.6e-03 | -3.9 | 5.2 | 1.7e-07 | 0.52 | 0.18 | 0.50 | FALSE |
6 | YFS | Blood | NDST2 | 0.10 | 0.09 | lasso | 14 | 0.10 | 5.0e-30 | 6.0 | -6.1 | 1.2e-09 | -0.97 | 0.01 | 0.99 | FALSE |
7 | The Cancer Genome Atlas | Breast Invasive Carcinoma | CHCHD1 | 0.02 | 0.01 | lasso | 2 | 0.01 | 2.5e-03 | 6.1 | 6.1 | 1.1e-09 | 0.99 | 0.01 | 0.94 | FALSE |
8 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SEC24C | 0.04 | 0.02 | blup | 29 | 0.03 | 2.6e-06 | 6.1 | 6.2 | 5.5e-10 | 0.89 | 0.01 | 0.99 | TRUE |
9 | The Cancer Genome Atlas | Lung Adenocarcinoma | SEC24C | 0.02 | 0.01 | enet | 4 | 0.01 | 8.5e-03 | -3.9 | 5.4 | 6.8e-08 | 0.50 | 0.05 | 0.16 | FALSE |
10 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | BMS1P4 | 0.21 | 0.08 | enet | 15 | 0.08 | 2.3e-03 | 6.0 | -5.6 | 1.6e-08 | -0.88 | 0.00 | 0.81 | FALSE |