Best TWAS P=4.71e-42 · Best GWAS P=6.88e-39 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Brain Cerebellar Hemisphere | DCST2 | 0.45 | 0.10 | lasso | 6 | 0.16 | 6.6e-05 | -4.267 | 9.9 | 5.6e-23 | 0.75 | 0.01 | 0.96 | TRUE |
2 | GTEx | Brain Nucleus accumbens basal ganglia | DCST2 | 0.28 | 0.04 | lasso | 5 | 0.13 | 2.0e-04 | 13.044 | 8.3 | 9.4e-17 | 0.69 | 0.02 | 0.90 | TRUE |
3 | GTEx | Brain Putamen basal ganglia | DCST2 | 0.56 | 0.05 | enet | 11 | 0.10 | 2.8e-03 | -4.267 | 5.4 | 8.3e-08 | 0.47 | 0.18 | 0.58 | FALSE |
4 | GTEx | Breast Mammary Tissue (Female) | FAM189B | 0.05 | -0.01 | lasso | 2 | 0.00 | 4.8e-01 | -6.689 | 6.7 | 2.6e-11 | 0.09 | 0.04 | 0.07 | FALSE |
5 | GTEx | Colon Sigmoid | GBAP1 | 0.16 | 0.13 | enet | 8 | 0.14 | 8.4e-06 | 3.296 | 5.2 | 2.6e-07 | 0.09 | 0.65 | 0.04 | FALSE |
6 | GTEx | Esophagus Mucosa | ADAM15 | 0.11 | 0.02 | enet | 16 | 0.04 | 1.5e-03 | -5.778 | -6.2 | 5.2e-10 | -0.43 | 0.13 | 0.78 | FALSE |
7 | GTEx | Esophagus Mucosa | MUC1 | 0.17 | 0.20 | lasso | 4 | 0.18 | 5.6e-12 | -7.478 | -7.1 | 1.0e-12 | -0.12 | 1.00 | 0.00 | TRUE |
8 | GTEx | Pancreas | THBS3 | 0.36 | 0.14 | lasso | 6 | 0.12 | 1.0e-05 | 2.898 | -6.1 | 8.3e-10 | -0.34 | 0.18 | 0.54 | TRUE |
9 | GTEx | Pancreas | RP11-263K19.4 | 0.22 | 0.06 | enet | 23 | 0.05 | 3.1e-03 | 2.898 | -8.6 | 5.5e-18 | -0.43 | 0.06 | 0.49 | FALSE |
10 | GTEx | Skin Not Sun Exposed Suprapubic | GBAP1 | 0.15 | 0.06 | lasso | 4 | 0.06 | 3.6e-04 | -7.567 | 6.2 | 4.9e-10 | 0.11 | 0.54 | 0.04 | FALSE |
11 | GTEx | Skin Sun Exposed Lower leg | ADAM15 | 0.14 | 0.09 | lasso | 4 | 0.08 | 6.1e-07 | 13.044 | -13.6 | 4.7e-42 | -0.96 | 0.00 | 1.00 | TRUE |
12 | GTEx | Spleen | SHC1 | 0.22 | 0.14 | lasso | 2 | 0.08 | 4.0e-03 | -5.790 | -5.5 | 3.4e-08 | -0.15 | 0.14 | 0.05 | FALSE |
13 | GTEx | Testis | MUC1 | 0.20 | 0.02 | lasso | 7 | 0.07 | 7.5e-04 | -7.567 | -6.4 | 1.4e-10 | -0.11 | 0.27 | 0.05 | TRUE |
14 | GTEx | Thyroid | DCST2 | 0.16 | 0.12 | lasso | 2 | 0.11 | 6.4e-09 | -4.267 | 6.3 | 2.2e-10 | 0.53 | 0.38 | 0.62 | FALSE |
15 | GTEx | Vagina | GBAP1 | 0.27 | 0.08 | lasso | 7 | 0.17 | 1.3e-04 | -5.790 | 5.6 | 2.7e-08 | 0.09 | 0.25 | 0.05 | FALSE |
16 | METSIM | Adipose | DCST2 | 0.04 | 0.04 | enet | 12 | 0.04 | 4.3e-07 | -4.101 | 5.7 | 9.9e-09 | 0.47 | 0.86 | 0.11 | TRUE |
17 | NTR | Blood | ZBTB7B | 0.02 | 0.02 | lasso | 1 | 0.01 | 5.4e-05 | 7.303 | 7.3 | 2.8e-13 | 0.67 | 0.87 | 0.03 | FALSE |
18 | ROSMAP | Brain Pre-frontal Cortex | SLC50A1 | 0.06 | 0.02 | bslmm | 331 | 0.03 | 4.3e-05 | -7.478 | -7.5 | 6.0e-14 | -0.27 | 0.65 | 0.04 | FALSE |
19 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | TRIM46 | 0.03 | 0.00 | blup | 33 | 0.02 | 3.6e-03 | -7.478 | -6.5 | 6.7e-11 | -0.11 | 0.01 | 0.68 | FALSE |
20 | The Cancer Genome Atlas | Breast Invasive Carcinoma | LENEP | 0.01 | 0.00 | blup | 37 | 0.01 | 1.6e-03 | -3.990 | 6.0 | 2.1e-09 | 0.48 | 0.02 | 0.30 | FALSE |
21 | The Cancer Genome Atlas | Breast Invasive Carcinoma | TRIM46 | 0.03 | 0.01 | blup | 32 | 0.01 | 4.9e-03 | -7.458 | -5.4 | 8.3e-08 | -0.11 | 0.00 | 0.64 | TRUE |
22 | The Cancer Genome Atlas | Colon Adenocarcinoma | ADAM15 | 0.15 | 0.02 | blup | 49 | 0.08 | 1.4e-05 | 6.568 | -6.2 | 6.1e-10 | -0.34 | 0.03 | 0.04 | TRUE |
23 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | MUC1 | 0.04 | 0.01 | enet | 4 | 0.02 | 1.3e-03 | -7.478 | -6.4 | 2.1e-10 | -0.15 | 0.00 | 0.88 | FALSE |
24 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | RAG1AP1 | 0.07 | 0.00 | blup | 76 | 0.00 | 2.9e-01 | -3.066 | -6.3 | 3.3e-10 | -0.17 | 0.02 | 0.25 | FALSE |
25 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | ADAM15 | 0.09 | 0.00 | blup | 49 | 0.02 | 3.6e-02 | 0.054 | -5.7 | 1.1e-08 | -0.43 | 0.01 | 0.09 | FALSE |
26 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | ZBTB7B | 0.05 | 0.06 | lasso | 2 | 0.05 | 1.8e-06 | 13.044 | -13.0 | 7.4e-39 | -1.00 | 0.00 | 1.00 | FALSE |
27 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GBA | 0.05 | 0.01 | lasso | 2 | 0.01 | 2.3e-02 | 6.679 | -5.5 | 3.3e-08 | -0.07 | 0.02 | 0.04 | FALSE |