Best TWAS P=4.57e-11 · Best GWAS P=2.87e-11 conditioned to 0.0986
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | EXD1 | 0.04 | 0.04 | lasso | 3 | 0.04 | 8.1e-06 | 6.0 | -5.9 | 3.6e-09 | -0.94 | 0.05 | 0.94 | FALSE |
2 | GTEx | Brain Cortex | GCHFR | 0.25 | 0.04 | enet | 15 | 0.05 | 1.4e-02 | 5.1 | -5.4 | 8.3e-08 | -0.77 | 0.04 | 0.72 | FALSE |
3 | GTEx | Colon Sigmoid | NDUFAF1 | 0.15 | 0.06 | lasso | 4 | 0.06 | 5.2e-03 | 5.5 | -6.1 | 8.7e-10 | -0.70 | 0.16 | 0.59 | FALSE |
4 | GTEx | Esophagus Mucosa | NDUFAF1 | 0.25 | 0.18 | enet | 26 | 0.24 | 4.3e-16 | 5.5 | -5.2 | 2.0e-07 | -0.60 | 0.92 | 0.08 | FALSE |
5 | GTEx | Esophagus Mucosa | CHP1 | 0.19 | 0.10 | lasso | 7 | 0.09 | 1.4e-06 | 5.5 | -5.8 | 7.0e-09 | -0.94 | 0.02 | 0.98 | FALSE |
6 | GTEx | Lung | OIP5-AS1 | 0.09 | 0.08 | enet | 14 | 0.12 | 2.8e-09 | 6.2 | 5.6 | 2.0e-08 | 0.88 | 0.02 | 0.98 | FALSE |
7 | GTEx | Skin Not Sun Exposed Suprapubic | NDUFAF1 | 0.16 | 0.06 | lasso | 3 | 0.07 | 1.7e-04 | 5.5 | -5.7 | 1.5e-08 | -0.50 | 0.09 | 0.13 | FALSE |
8 | GTEx | Skin Sun Exposed Lower leg | CHP1 | 0.06 | 0.04 | enet | 9 | 0.04 | 3.1e-04 | 6.2 | -6.6 | 4.6e-11 | -0.90 | 0.03 | 0.95 | TRUE |
9 | NTR | Blood | INO80 | 0.02 | 0.02 | enet | 8 | 0.03 | 2.8e-09 | 5.2 | -5.4 | 7.3e-08 | -0.84 | 0.55 | 0.45 | FALSE |
10 | YFS | Blood | MGA | 0.01 | 0.00 | blup | 454 | 0.00 | 7.1e-02 | 5.9 | 6.0 | 1.9e-09 | 0.69 | 0.02 | 0.82 | FALSE |
11 | The Cancer Genome Atlas | Breast Invasive Carcinoma | CHP | 0.01 | 0.01 | blup | 54 | 0.01 | 1.4e-02 | 6.6 | -6.2 | 5.5e-10 | -0.92 | 0.01 | 0.90 | FALSE |