[Hub]/) : Traits : Height : ← →

chr20:46,551,079-51,518,982

Best TWAS P=7.37e-81 · Best GWAS P=6.59e-79 conditioned to 1

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	CommonMind	Brain Pre-frontal Cortex	ARFGEF2	0.09	0.05	lasso	8	0.10	9.2e-13	18.0	-17.9	1.2e-71	-0.82	0.01	0.99	FALSE
2	CommonMind	Brain Pre-frontal Cortex	CSE1L	0.08	0.07	bslmm	503	0.05	1.7e-06	-7.2	-11.7	1.1e-31	-0.58	0.92	0.08	FALSE
3	CommonMind	Brain Pre-frontal Cortex	DDX27	0.04	0.04	enet	11	0.07	7.3e-09	-6.4	5.8	6.6e-09	0.26	0.96	0.01	FALSE
4	CommonMind	Brain Pre-frontal Cortex	SLC9A8	0.15	0.05	enet	26	0.09	2.3e-11	2.4	6.1	9.8e-10	0.00	1.00	0.00	FALSE
5	CommonMind	Brain Pre-frontal Cortex	STAU1	0.09	0.00	bslmm	500	0.01	8.7e-03	-5.6	-6.4	1.3e-10	-0.30	0.26	0.06	TRUE
6	GTEx	Adipose Subcutaneous	ARFGEF2	0.10	0.07	lasso	3	0.06	1.1e-05	-6.6	-6.5	1.1e-10	-0.42	0.94	0.04	FALSE
7	GTEx	Adipose Subcutaneous	CSE1L	0.15	0.15	lasso	4	0.15	2.4e-12	-6.3	-6.4	1.7e-10	-0.42	1.00	0.00	FALSE
8	GTEx	Adipose Visceral Omentum	ZFP64	0.17	0.00	lasso	4	0.00	2.5e-01	6.2	5.3	1.1e-07	-0.03	0.08	0.07	TRUE
9	GTEx	Adipose Visceral Omentum	CSE1L	0.13	0.02	enet	19	0.05	2.1e-03	-6.0	-6.4	1.6e-10	-0.42	0.27	0.07	FALSE
10	GTEx	Artery Aorta	CSE1L	0.12	0.18	lasso	4	0.16	2.9e-09	-7.2	-7.3	2.2e-13	-0.44	0.92	0.08	FALSE
11	GTEx	Artery Tibial	CSE1L	0.12	0.03	lasso	6	0.04	3.8e-04	-6.6	-11.6	2.3e-31	-0.68	0.30	0.68	FALSE
12	GTEx	Brain Cerebellar Hemisphere	DDX27	0.30	0.07	lasso	9	0.03	4.8e-02	-7.1	-7.8	8.0e-15	-0.27	0.07	0.09	FALSE
13	GTEx	Brain Nucleus accumbens basal ganglia	BCAS4	0.33	0.01	lasso	7	0.00	4.6e-01	8.4	-9.8	8.9e-23	-0.01	0.07	0.07	TRUE
14	GTEx	Brain Nucleus accumbens basal ganglia	SLC9A8	0.42	0.09	lasso	7	0.08	3.8e-03	-9.4	8.5	1.5e-17	-0.06	0.07	0.11	FALSE
15	GTEx	Cells Transformed fibroblasts	ZFP64	0.09	0.09	enet	5	0.09	1.9e-07	-4.2	6.2	4.0e-10	-0.04	0.84	0.07	TRUE
16	GTEx	Cells Transformed fibroblasts	STAU1	0.08	0.03	lasso	6	0.02	2.3e-02	14.7	16.4	9.4e-61	0.85	0.03	0.92	FALSE
17	GTEx	Cells Transformed fibroblasts	ZFAS1	0.06	0.05	enet	5	0.03	2.6e-03	-10.1	10.1	7.3e-24	0.29	0.41	0.27	FALSE
18	GTEx	Colon Sigmoid	ARFGEF2	0.15	0.12	lasso	1	0.07	2.3e-03	13.7	-13.7	1.3e-42	-0.60	0.05	0.61	FALSE
19	GTEx	Colon Sigmoid	CSE1L	0.18	0.12	lasso	11	0.09	4.4e-04	15.8	-16.1	5.7e-58	-0.80	0.10	0.86	FALSE
20	GTEx	Colon Transverse	ARFGEF2	0.11	0.07	enet	12	0.09	2.9e-05	-6.6	-13.3	1.7e-40	-0.78	0.18	0.75	FALSE
21	GTEx	Colon Transverse	CSE1L	0.17	0.01	enet	19	0.03	1.2e-02	6.8	-11.0	3.1e-28	-0.49	0.18	0.20	FALSE
22	GTEx	Esophagus Gastroesophageal Junction	CSE1L	0.17	0.07	lasso	5	0.07	1.6e-03	-6.5	-9.7	4.3e-22	-0.49	0.30	0.25	TRUE
23	GTEx	Esophagus Mucosa	ATP9A	0.15	0.05	lasso	5	0.01	6.6e-02	-5.4	-5.3	1.2e-07	0.07	0.16	0.41	TRUE
24	GTEx	Esophagus Mucosa	CSE1L	0.09	0.06	lasso	4	0.06	6.9e-05	16.6	-15.7	1.6e-55	-0.80	0.19	0.76	FALSE
25	GTEx	Esophagus Mucosa	ZFAS1	0.15	0.01	enet	16	0.01	8.9e-02	18.6	12.6	1.3e-36	0.69	0.03	0.89	FALSE
26	GTEx	Esophagus Muscularis	CSE1L	0.16	0.14	enet	22	0.12	5.1e-08	-6.6	-8.1	3.8e-16	-0.44	0.96	0.03	FALSE
27	GTEx	Heart Atrial Appendage	CSE1L	0.09	0.07	lasso	5	0.06	9.1e-04	-6.6	-6.1	1.0e-09	-0.42	0.55	0.09	FALSE
28	GTEx	Lung	CSE1L	0.10	0.09	lasso	5	0.08	6.6e-07	14.8	-14.5	1.5e-47	-0.73	0.63	0.36	FALSE
29	GTEx	Muscle Skeletal	PREX1	0.14	0.09	enet	23	0.13	2.5e-12	13.8	12.0	4.0e-33	0.51	0.83	0.17	FALSE
30	GTEx	Muscle Skeletal	CSE1L	0.18	0.19	lasso	9	0.20	4.6e-19	-6.6	-5.7	1.1e-08	-0.42	1.00	0.00	FALSE
31	GTEx	Nerve Tibial	CSE1L	0.12	0.01	lasso	10	0.03	5.7e-03	-6.6	-8.2	1.7e-16	-0.48	0.19	0.22	FALSE
32	GTEx	Skin Not Sun Exposed Suprapubic	ZFAS1	0.16	0.04	enet	19	0.07	1.0e-04	12.1	10.7	6.1e-27	0.69	0.05	0.90	FALSE
33	GTEx	Skin Sun Exposed Lower leg	CSE1L	0.08	0.03	lasso	2	0.03	9.5e-04	16.9	-16.2	6.9e-59	-0.81	0.47	0.16	FALSE
34	GTEx	Skin Sun Exposed Lower leg	ZFAS1	0.07	0.03	enet	14	0.05	5.8e-05	18.6	13.9	8.2e-44	0.77	0.03	0.96	FALSE
35	GTEx	Testis	ARFGEF2	0.20	0.20	lasso	7	0.24	5.4e-11	14.7	-17.3	7.7e-67	-0.91	0.02	0.98	FALSE
36	GTEx	Testis	RP4-530I15.9	0.36	0.42	lasso	1	0.42	3.3e-20	6.0	6.0	1.7e-09	-0.07	1.00	0.00	FALSE
37	GTEx	Thyroid	CSE1L	0.20	0.21	enet	15	0.20	2.3e-15	-7.2	-6.9	4.4e-12	-0.44	1.00	0.00	FALSE
38	GTEx	Thyroid	SLC9A8	0.14	0.03	enet	16	0.02	2.3e-02	2.7	6.1	1.2e-09	-0.09	0.14	0.08	FALSE
39	GTEx	Whole Blood	ZFAS1	0.07	0.06	lasso	4	0.05	1.3e-05	-9.9	-9.9	4.8e-23	-0.20	1.00	0.00	TRUE
40	METSIM	Adipose	ARFGEF2	0.04	0.03	lasso	12	0.02	9.8e-05	18.8	-19.0	7.4e-81	-0.98	0.02	0.98	TRUE
41	METSIM	Adipose	CSE1L	0.05	0.05	lasso	4	0.04	5.3e-07	-6.5	-9.4	4.9e-21	-0.58	0.91	0.09	FALSE
42	METSIM	Adipose	PARD6B	0.03	0.00	bslmm	494	0.01	5.1e-02	3.4	-6.7	1.9e-11	0.02	0.05	0.20	TRUE
43	METSIM	Adipose	RP11-290F20.1	0.10	0.08	lasso	3	0.08	4.9e-12	6.2	7.6	2.4e-14	-0.08	1.00	0.00	TRUE
44	METSIM	Adipose	SLC9A8	0.07	0.01	lasso	6	0.01	3.1e-03	-3.6	5.4	5.6e-08	-0.07	0.55	0.03	TRUE
45	NTR	Blood	NCRNA00275	0.07	0.06	lasso	4	0.08	9.7e-25	-9.7	-15.4	3.0e-53	-0.53	1.00	0.00	TRUE
46	NTR	Blood	SNORD12B	0.03	0.05	lasso	8	0.05	1.9e-14	18.6	-19.0	7.4e-81	-0.96	0.02	0.98	FALSE
47	ROSMAP	Brain Pre-frontal Cortex	CSE1L	0.04	0.02	enet	16	0.02	2.8e-03	13.7	-14.4	8.9e-47	-0.72	0.10	0.89	FALSE
48	ROSMAP	Brain Pre-frontal Cortex	SLC9A8	0.14	0.04	enet	10	0.14	2.0e-17	2.7	7.5	7.3e-14	-0.01	1.00	0.00	FALSE
49	YFS	Blood	CSE1L	0.06	0.05	enet	21	0.06	2.0e-19	-6.6	-12.4	1.9e-35	-0.60	1.00	0.00	FALSE
50	YFS	Blood	PTPN1	0.37	0.30	enet	21	0.30	1.1e-101	8.7	-9.7	2.2e-22	0.00	0.98	0.02	FALSE
51	YFS	Blood	RNF114	0.08	0.04	bslmm	442	0.04	4.0e-12	4.3	6.6	5.1e-11	-0.02	1.00	0.00	TRUE
52	YFS	Blood	ZNFX1	0.06	0.05	lasso	3	0.05	1.4e-16	8.5	-10.8	2.1e-27	-0.55	1.00	0.00	FALSE
53	The Cancer Genome Atlas	Breast Invasive Carcinoma	STAU1	0.01	0.01	blup	54	0.01	6.1e-03	-10.1	-11.4	4.4e-30	-0.46	0.03	0.13	FALSE
54	The Cancer Genome Atlas	Colon Adenocarcinoma	SNAI1	0.09	0.10	lasso	5	0.06	3.1e-04	-10.4	10.4	2.8e-25	-0.03	0.19	0.59	TRUE
55	The Cancer Genome Atlas	Glioblastoma Multiforme	CSE1L	0.15	0.06	lasso	3	0.07	4.4e-03	-6.3	-5.9	4.0e-09	-0.37	0.03	0.08	FALSE
56	The Cancer Genome Atlas	Head and Neck Squamous Cell Carcinoma	CSE1L	0.03	0.05	lasso	1	0.03	9.3e-05	14.7	-14.7	4.1e-49	-0.75	0.27	0.65	FALSE
57	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	CSE1L	0.05	0.07	blup	50	0.07	3.2e-08	15.7	-15.7	1.4e-55	-0.80	0.44	0.56	FALSE
58	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	SLC9A8	0.10	0.07	lasso	5	0.08	1.6e-09	-3.6	5.2	2.4e-07	-0.04	0.45	0.55	FALSE
59	The Cancer Genome Atlas	Brain Lower Grade Glioma	ARFGEF2	0.05	0.04	lasso	5	0.05	3.2e-06	18.0	-18.3	1.4e-74	-0.94	0.00	1.00	FALSE
60	The Cancer Genome Atlas	Brain Lower Grade Glioma	CSE1L	0.05	0.06	lasso	3	0.05	1.0e-06	-6.3	-7.0	2.6e-12	-0.47	0.94	0.05	FALSE
61	The Cancer Genome Atlas	Brain Lower Grade Glioma	SLC9A8	0.07	0.02	blup	82	0.02	8.6e-04	-10.1	8.2	1.9e-16	-0.01	0.00	0.99	FALSE
62	The Cancer Genome Atlas	Lung Squamous Cell Carcinoma	C20orf199	0.04	0.00	enet	8	0.02	6.4e-03	8.5	12.8	8.8e-38	0.62	0.01	0.50	FALSE
63	The Cancer Genome Atlas	Ovarian Serous Cystadenocarcinoma	C20orf199	0.05	0.06	lasso	4	0.06	1.0e-04	18.6	18.6	2.2e-77	0.92	0.00	0.96	FALSE
64	The Cancer Genome Atlas	Prostate Adenocarcinoma	CSE1L	0.05	0.05	lasso	3	0.06	8.1e-07	-7.2	-6.8	7.8e-12	-0.44	0.94	0.02	FALSE
65	The Cancer Genome Atlas	Testicular Germ Cell Tumors	CSE1L	0.13	0.03	blup	50	0.07	1.4e-03	14.7	-13.5	2.4e-41	-0.60	0.03	0.27	FALSE
66	The Cancer Genome Atlas	Thyroid Carcinoma	ARFGEF2	0.06	0.01	blup	79	0.03	4.2e-04	-7.8	-10.5	1.2e-25	-0.42	0.75	0.05	FALSE
67	The Cancer Genome Atlas	Thyroid Carcinoma	CSE1L	0.12	0.20	lasso	2	0.19	7.1e-18	-6.6	-6.6	5.4e-11	-0.43	1.00	0.00	FALSE
68	The Cancer Genome Atlas	Thyroid Carcinoma	DDX27	0.08	0.05	lasso	3	0.05	1.9e-05	18.6	16.5	2.3e-61	0.85	0.02	0.96	FALSE
69	The Cancer Genome Atlas	Thyroid Carcinoma	SLC9A8	0.21	0.12	blup	83	0.13	5.7e-13	-3.7	6.9	6.4e-12	-0.03	0.54	0.46	FALSE