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chr7:149,577,591-151,668,435

Best TWAS P=1.32e-20 · Best GWAS P=1.35e-30 conditioned to 0.0192

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
4	GTEx	Brain Cerebellum	KCNH2	0.35	0.20	enet	24	0.28	4.8e-09	-10.76	-9.3	1.3e-20	0.83	0.00	1.00	TRUE
23	The Cancer Genome Atlas	Testicular Germ Cell Tumors	TMEM176A	0.15	0.00	lasso	10	0.02	5.7e-02	8.78	7.2	4.8e-13	-0.24	0.01	0.30	TRUE
2	GTEx	Artery Coronary	RP11-148K1.12	0.31	-0.01	enet	16	0.00	2.2e-01	6.17	-7.1	1.2e-12	0.17	0.08	0.06	TRUE
5	GTEx	Colon Transverse	ABCB8	0.17	0.12	lasso	2	0.07	4.8e-04	5.87	5.7	1.4e-08	-0.10	0.36	0.03	TRUE
20	The Cancer Genome Atlas	Liver Hepatocellular Carcinoma	ABP1	0.26	0.20	enet	10	0.17	1.4e-08	-6.60	-8.0	1.5e-15	0.39	0.78	0.22	FALSE
10	GTEx	Uterus	GIMAP4	0.32	-0.01	enet	42	0.02	1.4e-01	-0.65	-7.8	7.3e-15	0.48	0.05	0.20	FALSE
17	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	TMEM176A	0.19	0.05	lasso	6	0.13	2.6e-14	-6.65	7.2	7.4e-13	-0.11	0.07	0.93	FALSE
12	METSIM	Adipose	AOC1	0.17	0.08	enet	26	0.11	3.2e-16	5.62	7.1	1.4e-12	-0.30	1.00	0.00	FALSE
15	The Cancer Genome Atlas	Bladder Urothelial Carcinoma	TMEM176A	0.06	0.01	blup	60	0.03	1.0e-03	6.16	6.6	3.3e-11	-0.17	0.05	0.32	FALSE
3	GTEx	Brain Cerebellar Hemisphere	KCNH2	0.34	0.09	lasso	5	0.12	5.0e-04	4.94	-6.5	6.0e-11	0.67	0.02	0.83	FALSE
13	ROSMAP	Brain Pre-frontal Cortex	TMEM176A	0.25	0.17	enet	19	0.20	1.5e-25	3.94	6.5	6.9e-11	-0.09	1.00	0.00	FALSE
1	CommonMind	Brain Pre-frontal Cortex	TMEM176A	0.07	0.04	lasso	8	0.03	7.0e-05	6.38	6.4	1.3e-10	-0.18	0.68	0.03	FALSE
6	GTEx	Esophagus Mucosa	SLC4A2	0.11	0.03	enet	8	0.06	5.1e-05	6.14	6.3	2.7e-10	-0.23	0.86	0.02	FALSE
16	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	ABP1	0.16	0.19	lasso	4	0.20	9.3e-22	-6.65	6.2	5.0e-10	-0.25	1.00	0.00	FALSE
7	GTEx	Heart Atrial Appendage	TMEM176B	0.37	0.06	enet	15	0.23	1.1e-10	-0.82	-6.0	2.1e-09	0.34	0.55	0.10	FALSE
22	The Cancer Genome Atlas	Prostate Adenocarcinoma	TMEM176A	0.15	0.01	blup	60	0.04	6.1e-05	8.78	5.8	7.3e-09	-0.17	0.09	0.58	FALSE
14	ROSMAP	Brain Pre-frontal Cortex	RP11-148K1.12	0.17	0.16	lasso	4	0.16	5.2e-20	5.28	5.7	1.0e-08	-0.26	1.00	0.00	FALSE
8	GTEx	Muscle Skeletal	AGAP3	0.10	0.04	lasso	5	0.03	8.5e-04	5.90	-5.5	3.4e-08	0.13	0.66	0.03	FALSE
9	GTEx	Thyroid	SMARCD3	0.10	0.01	lasso	3	0.01	3.5e-02	5.44	5.4	5.5e-08	-0.13	0.23	0.03	FALSE
21	The Cancer Genome Atlas	Ovarian Serous Cystadenocarcinoma	ATG9B	0.08	0.03	lasso	3	0.03	2.5e-03	0.88	-5.4	5.8e-08	0.49	0.02	0.69	FALSE
11	GTEx	Whole Blood	AGAP3	0.09	0.04	lasso	4	0.03	1.3e-03	5.44	-5.4	7.3e-08	0.14	0.84	0.00	FALSE
24	The Cancer Genome Atlas	Thyroid Carcinoma	TMEM176A	0.32	0.09	blup	60	0.11	6.7e-11	-0.82	5.2	1.5e-07	-0.19	1.00	0.00	FALSE
18	The Cancer Genome Atlas	Kidney Renal Papillary Cell Carcinoma	TMEM176A	0.17	0.05	blup	60	0.07	5.1e-05	-2.90	5.2	1.8e-07	-0.02	0.29	0.41	FALSE
19	The Cancer Genome Atlas	Brain Lower Grade Glioma	AGAP3	0.04	0.03	lasso	3	0.02	4.1e-03	5.47	-5.2	2.1e-07	0.14	0.02	0.79	FALSE