[Hub]/) : Traits : Trunk fat-free mass : ← →

chr19:9,637,688-12,921,186

Best TWAS P=6.55e-19 · Best GWAS P=1.18e-18 conditioned to 1

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
20	The Cancer Genome Atlas	Brain Lower Grade Glioma	LOC147727	0.07	0.02	lasso	2	0.02	5.4e-03	8.8	-8.9	6.5e-19	-0.99	0.01	0.87	TRUE
12	GTEx	Whole Blood	CTD-2369P2.8	0.12	0.11	lasso	3	0.10	9.2e-10	5.9	6.4	1.6e-10	0.06	1.00	0.00	TRUE
16	The Cancer Genome Atlas	Breast Invasive Carcinoma	S1PR2	0.02	0.00	blup	32	0.01	1.5e-02	-6.0	6.2	6.0e-10	0.04	0.00	0.65	TRUE
10	GTEx	Testis	PDE4A	0.20	0.02	enet	39	0.04	6.4e-03	5.1	6.2	7.8e-10	0.06	0.06	0.04	TRUE
17	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	FDX1L	0.06	0.02	lasso	3	0.04	2.4e-05	-4.5	-5.8	6.4e-09	-0.04	0.22	0.10	TRUE
11	GTEx	Vagina	CTD-2369P2.2	0.50	-0.01	lasso	9	0.01	2.0e-01	5.6	5.6	2.7e-08	0.01	0.22	0.11	TRUE
3	CommonMind	Brain Pre-frontal Cortex	ZNF788	0.08	0.05	lasso	6	0.04	5.9e-06	5.6	5.5	3.2e-08	-0.09	0.01	0.99	TRUE
8	GTEx	Nerve Tibial	ILF3-AS1	0.14	0.04	lasso	3	0.08	3.8e-06	8.7	-7.7	1.5e-14	-0.77	0.01	0.98	FALSE
7	GTEx	Muscle Skeletal	SLC44A2	0.19	0.18	lasso	5	0.19	5.1e-18	7.0	7.7	2.0e-14	0.79	0.83	0.17	FALSE
6	GTEx	Esophagus Mucosa	ILF3-AS1	0.11	0.00	lasso	4	0.00	2.5e-01	8.8	-7.6	2.9e-14	-0.77	0.02	0.89	FALSE
18	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	LOC147727	0.13	0.02	blup	28	0.04	7.2e-05	8.7	-7.0	2.7e-12	-0.76	0.01	0.90	FALSE
21	The Cancer Genome Atlas	Thyroid Carcinoma	SLC44A2	0.32	0.22	enet	14	0.25	3.8e-24	8.1	6.5	7.5e-11	0.85	0.68	0.32	FALSE
5	GTEx	Esophagus Mucosa	SLC44A2	0.13	0.00	lasso	6	0.02	1.4e-02	5.0	-6.3	2.2e-10	-0.46	0.06	0.62	FALSE
2	CommonMind	Brain Pre-frontal Cortex	S1PR2	0.07	0.02	bslmm	369	0.03	5.3e-05	-5.2	6.3	3.0e-10	0.31	0.32	0.14	FALSE
9	GTEx	Skin Sun Exposed Lower leg	SMARCA4	0.15	0.10	enet	25	0.15	1.4e-12	3.5	-6.2	7.9e-10	-0.61	1.00	0.00	FALSE
13	NTR	Blood	SMARCA4	0.07	0.06	lasso	11	0.06	9.0e-18	5.5	-6.1	1.1e-09	-0.43	1.00	0.00	FALSE
15	ROSMAP	Brain Pre-frontal Cortex	ILF3-AS1	0.15	0.04	bslmm	354	0.18	7.1e-22	-1.4	-6.0	1.9e-09	-0.61	0.05	0.95	FALSE
1	CommonMind	Brain Pre-frontal Cortex	RAVER1	0.06	0.03	bslmm	388	0.04	2.5e-05	-2.1	-5.8	7.7e-09	-0.48	0.20	0.34	FALSE
19	The Cancer Genome Atlas	Brain Lower Grade Glioma	FDX1L	0.06	0.00	blup	53	0.02	5.1e-03	-4.5	-5.7	1.0e-08	0.05	0.01	0.04	FALSE
4	GTEx	Adipose Subcutaneous	EPOR	0.11	0.04	lasso	7	0.04	3.8e-04	4.8	5.5	3.7e-08	0.39	0.01	0.99	FALSE
14	ROSMAP	Brain Pre-frontal Cortex	AP1M2	0.09	0.01	lasso	5	0.03	3.3e-05	5.0	5.2	1.8e-07	0.37	0.13	0.19	FALSE