Best TWAS P=1.56e-11 · Best GWAS P=6.98e-12 conditioned to 0.00687
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ERI1 | 0.06 | 0.04 | lasso | 3 | 0.04 | 9.0e-06 | 5.5 | 5.7 | 1.0e-08 | -0.44 | 0.18 | 0.82 | FALSE |
2 | GTEx | Adipose Subcutaneous | ERI1 | 0.05 | 0.00 | enet | 10 | 0.00 | 5.5e-01 | -4.8 | 6.7 | 1.6e-11 | -0.75 | 0.22 | 0.36 | TRUE |
3 | GTEx | Artery Aorta | ERI1 | 0.11 | 0.08 | lasso | 5 | 0.10 | 5.1e-06 | -4.1 | 5.3 | 1.1e-07 | -0.71 | 0.64 | 0.32 | FALSE |
4 | GTEx | Artery Tibial | ERI1 | 0.05 | 0.02 | lasso | 7 | 0.01 | 3.2e-02 | -6.0 | 5.7 | 1.5e-08 | -0.72 | 0.07 | 0.88 | FALSE |
5 | GTEx | Brain Cerebellar Hemisphere | FAM86B3P | 0.28 | 0.27 | lasso | 8 | 0.28 | 5.4e-08 | -5.3 | 5.2 | 2.7e-07 | -0.74 | 0.04 | 0.95 | FALSE |
6 | GTEx | Cells Transformed fibroblasts | FAM86B3P | 0.23 | 0.33 | lasso | 11 | 0.38 | 8.4e-30 | -4.5 | -5.4 | 5.3e-08 | 0.75 | 0.49 | 0.50 | FALSE |
7 | GTEx | Esophagus Gastroesophageal Junction | MSRA | 0.11 | -0.01 | enet | 30 | -0.01 | 8.0e-01 | -6.0 | 5.1 | 2.7e-07 | -0.67 | 0.03 | 0.82 | FALSE |
8 | GTEx | Esophagus Muscularis | ERI1 | 0.12 | 0.09 | enet | 13 | 0.08 | 7.7e-06 | -3.9 | 5.8 | 5.4e-09 | -0.73 | 0.09 | 0.91 | FALSE |
9 | GTEx | Lung | ERI1 | 0.13 | 0.07 | lasso | 6 | 0.09 | 2.7e-07 | 5.3 | 5.9 | 4.3e-09 | -0.75 | 0.22 | 0.78 | FALSE |
10 | GTEx | Lung | AC087269.1 | 0.20 | 0.19 | lasso | 9 | 0.18 | 4.8e-14 | -5.1 | 5.6 | 1.7e-08 | -0.50 | 0.58 | 0.41 | FALSE |
11 | GTEx | Lung | CLDN23 | 0.18 | 0.17 | lasso | 7 | 0.16 | 2.5e-12 | -5.1 | 5.5 | 3.1e-08 | -0.48 | 0.61 | 0.39 | FALSE |
12 | GTEx | Muscle Skeletal | MFHAS1 | 0.07 | 0.04 | lasso | 4 | 0.04 | 1.4e-04 | -4.3 | -5.6 | 2.2e-08 | 0.70 | 0.17 | 0.82 | FALSE |
13 | GTEx | Nerve Tibial | ERI1 | 0.07 | 0.01 | enet | 16 | 0.01 | 4.2e-02 | 3.9 | 5.9 | 3.1e-09 | -0.76 | 0.29 | 0.23 | FALSE |
14 | GTEx | Skin Not Sun Exposed Suprapubic | AC087269.1 | 0.43 | 0.31 | lasso | 11 | 0.31 | 2.2e-17 | -5.1 | 5.2 | 1.9e-07 | -0.41 | 0.63 | 0.36 | FALSE |
15 | GTEx | Skin Not Sun Exposed Suprapubic | CLDN23 | 0.42 | 0.30 | lasso | 12 | 0.30 | 7.6e-17 | -5.1 | 5.2 | 1.7e-07 | -0.41 | 0.64 | 0.36 | FALSE |
16 | GTEx | Skin Sun Exposed Lower leg | AC087269.1 | 0.43 | 0.39 | lasso | 8 | 0.40 | 3.5e-35 | -5.3 | 5.2 | 2.0e-07 | -0.41 | 0.56 | 0.44 | FALSE |
17 | GTEx | Skin Sun Exposed Lower leg | CLDN23 | 0.43 | 0.38 | lasso | 8 | 0.39 | 3.7e-34 | -5.3 | 5.2 | 2.2e-07 | -0.41 | 0.57 | 0.43 | FALSE |
18 | GTEx | Testis | RP11-375N15.2 | 0.12 | 0.01 | enet | 11 | 0.03 | 1.1e-02 | -4.3 | -5.8 | 8.8e-09 | 0.53 | 0.18 | 0.22 | FALSE |
19 | GTEx | Thyroid | AC087269.1 | 0.15 | 0.05 | lasso | 2 | 0.07 | 5.1e-06 | -5.1 | 5.7 | 1.1e-08 | -0.44 | 0.66 | 0.30 | FALSE |
20 | GTEx | Thyroid | SGK223 | 0.19 | 0.35 | enet | 16 | 0.36 | 1.1e-28 | -5.0 | 5.3 | 9.0e-08 | -0.76 | 0.46 | 0.54 | FALSE |
21 | GTEx | Thyroid | CLDN23 | 0.14 | 0.03 | lasso | 2 | 0.03 | 1.1e-03 | -5.1 | 5.8 | 7.2e-09 | -0.44 | 0.44 | 0.26 | FALSE |
22 | NTR | Blood | MFHAS1 | 0.02 | 0.01 | blup | 759 | 0.01 | 2.9e-04 | -5.6 | -6.0 | 1.6e-09 | 0.70 | 0.12 | 0.87 | FALSE |
23 | NTR | Blood | MSRA | 0.02 | 0.01 | blup | 833 | 0.01 | 2.3e-05 | -5.2 | 5.6 | 1.7e-08 | -0.78 | 0.05 | 0.95 | FALSE |
24 | The Cancer Genome Atlas | Lung Adenocarcinoma | ERI1 | 0.06 | 0.04 | blup | 72 | 0.04 | 1.5e-05 | -5.5 | 5.7 | 1.4e-08 | -0.60 | 0.14 | 0.84 | FALSE |
25 | The Cancer Genome Atlas | Thyroid Carcinoma | SGK223 | 0.16 | 0.20 | enet | 14 | 0.22 | 6.1e-21 | 4.6 | 5.1 | 2.9e-07 | -0.69 | 0.08 | 0.90 | FALSE |