Best TWAS P=3.19e-52 · Best GWAS P=3.07e-53 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | CD164 | 0.11 | 0.07 | blup | 376 | 0.10 | 1.6e-12 | -12.20 | 11.7 | 7.9e-32 | -0.52 | 0.83 | 0.17 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | FIG4 | 0.24 | 0.20 | enet | 19 | 0.20 | 1.8e-24 | -9.68 | 10.4 | 4.0e-25 | -0.62 | 1.00 | 0.00 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | MICAL1 | 0.17 | 0.12 | lasso | 9 | 0.14 | 4.0e-17 | -12.70 | 8.8 | 8.7e-19 | -0.60 | 1.00 | 0.00 | FALSE |
4 | CommonMind | Brain Pre-frontal Cortex | PPIL6 | 0.08 | 0.02 | bslmm | 397 | 0.04 | 1.2e-05 | -12.20 | -10.7 | 1.3e-26 | 0.62 | 0.35 | 0.53 | FALSE |
5 | CommonMind | Brain Pre-frontal Cortex | SMPD2 | 0.10 | 0.07 | bslmm | 375 | 0.08 | 3.3e-10 | -11.43 | -7.4 | 1.2e-13 | 0.59 | 0.99 | 0.00 | FALSE |
6 | GTEx | Adipose Subcutaneous | FIG4 | 0.12 | 0.08 | lasso | 4 | 0.07 | 4.4e-06 | 8.32 | 8.4 | 5.1e-17 | -0.43 | 0.94 | 0.02 | FALSE |
7 | GTEx | Adipose Subcutaneous | SMPD2 | 0.14 | 0.10 | lasso | 10 | 0.12 | 2.3e-10 | -12.90 | -13.0 | 9.3e-39 | 0.81 | 0.80 | 0.20 | FALSE |
8 | GTEx | Adipose Subcutaneous | AK9 | 0.12 | 0.09 | lasso | 7 | 0.10 | 2.1e-08 | -14.05 | 14.1 | 3.5e-45 | -0.91 | 0.18 | 0.81 | FALSE |
9 | GTEx | Adipose Subcutaneous | RP11-425D10.10 | 0.10 | 0.08 | enet | 22 | 0.07 | 4.4e-06 | -14.05 | -9.7 | 3.7e-22 | 0.83 | 0.07 | 0.93 | FALSE |
10 | GTEx | Adipose Visceral Omentum | AK9 | 0.10 | 0.02 | enet | 27 | 0.04 | 2.7e-03 | -13.69 | 11.3 | 1.8e-29 | -0.89 | 0.16 | 0.79 | TRUE |
11 | GTEx | Adipose Visceral Omentum | RP11-425D10.10 | 0.16 | 0.10 | lasso | 6 | 0.06 | 7.2e-04 | -14.05 | -12.5 | 9.4e-36 | 0.95 | 0.07 | 0.89 | FALSE |
12 | GTEx | Adrenal Gland | RP11-425D10.10 | 0.11 | 0.00 | enet | 11 | 0.02 | 4.9e-02 | -11.98 | -10.3 | 4.3e-25 | 0.74 | 0.11 | 0.50 | FALSE |
13 | GTEx | Artery Aorta | OSTM1 | 0.17 | 0.03 | enet | 33 | 0.02 | 3.9e-02 | -2.28 | -6.0 | 2.5e-09 | -0.05 | 0.31 | 0.05 | FALSE |
14 | GTEx | Artery Aorta | SMPD2 | 0.10 | 0.04 | enet | 11 | 0.03 | 1.5e-02 | -13.69 | -12.1 | 1.5e-33 | 0.92 | 0.02 | 0.97 | FALSE |
15 | GTEx | Artery Aorta | AK9 | 0.16 | 0.14 | enet | 32 | 0.14 | 3.7e-08 | 8.29 | 12.9 | 3.6e-38 | -0.75 | 0.33 | 0.67 | TRUE |
16 | GTEx | Artery Aorta | RP11-425D10.10 | 0.12 | 0.06 | lasso | 4 | 0.09 | 1.4e-05 | -14.05 | -12.4 | 3.8e-35 | 0.88 | 0.03 | 0.96 | FALSE |
17 | GTEx | Artery Coronary | ARMC2 | 0.29 | 0.13 | lasso | 9 | 0.12 | 7.5e-05 | -4.91 | -5.2 | 1.9e-07 | -0.10 | 0.68 | 0.02 | TRUE |
18 | GTEx | Artery Coronary | SMPD2 | 0.11 | 0.09 | lasso | 4 | 0.07 | 1.9e-03 | -11.07 | -12.2 | 3.2e-34 | 0.77 | 0.08 | 0.77 | FALSE |
19 | GTEx | Artery Coronary | AK9 | 0.27 | 0.26 | enet | 18 | 0.28 | 5.2e-10 | 8.54 | 12.7 | 1.1e-36 | -0.69 | 0.65 | 0.35 | FALSE |
20 | GTEx | Artery Coronary | CEP57L1 | 0.22 | 0.00 | lasso | 8 | 0.01 | 1.9e-01 | -0.67 | 5.5 | 3.0e-08 | -0.02 | 0.10 | 0.07 | FALSE |
21 | GTEx | Artery Coronary | RP11-425D10.10 | 0.31 | 0.00 | enet | 20 | 0.01 | 1.3e-01 | 5.42 | -9.3 | 1.6e-20 | 0.30 | 0.03 | 0.29 | FALSE |
22 | GTEx | Artery Tibial | FIG4 | 0.18 | 0.01 | enet | 41 | 0.07 | 4.1e-06 | -2.40 | 8.4 | 6.1e-17 | -0.56 | 0.11 | 0.70 | FALSE |
23 | GTEx | Artery Tibial | MICAL1 | 0.08 | 0.02 | lasso | 3 | 0.01 | 6.5e-02 | -15.22 | -15.2 | 3.2e-52 | 0.98 | 0.03 | 0.93 | TRUE |
24 | GTEx | Artery Tibial | AK9 | 0.13 | 0.12 | enet | 18 | 0.13 | 3.5e-10 | -13.94 | 14.3 | 1.2e-46 | -0.94 | 0.32 | 0.68 | FALSE |
25 | GTEx | Artery Tibial | RP11-425D10.10 | 0.10 | 0.10 | lasso | 4 | 0.10 | 3.9e-08 | -15.22 | -14.9 | 2.4e-50 | 0.97 | 0.01 | 0.99 | FALSE |
26 | GTEx | Brain Caudate basal ganglia | AK9 | 0.20 | 0.16 | enet | 16 | 0.17 | 1.1e-05 | -13.55 | 13.7 | 8.7e-43 | -0.90 | 0.20 | 0.72 | FALSE |
27 | GTEx | Brain Cerebellar Hemisphere | AK9 | 0.24 | 0.17 | lasso | 3 | 0.11 | 1.0e-03 | -14.05 | 14.1 | 5.4e-45 | -0.96 | 0.16 | 0.53 | FALSE |
28 | GTEx | Brain Cerebellum | AK9 | 0.38 | 0.06 | lasso | 9 | 0.12 | 2.1e-04 | -13.55 | 10.1 | 3.8e-24 | -0.79 | 0.19 | 0.15 | FALSE |
29 | GTEx | Brain Cortex | AK9 | 0.21 | 0.03 | enet | 29 | 0.16 | 3.2e-05 | -13.55 | 13.9 | 1.1e-43 | -0.87 | 0.10 | 0.83 | FALSE |
30 | GTEx | Brain Frontal Cortex BA9 | AK9 | 0.50 | 0.02 | enet | 47 | 0.15 | 1.1e-04 | -14.05 | 9.2 | 5.5e-20 | -0.66 | 0.24 | 0.12 | FALSE |
31 | GTEx | Brain Hypothalamus | ARMC2 | 0.37 | -0.01 | enet | 5 | 0.00 | 2.8e-01 | -4.44 | -5.9 | 3.8e-09 | -0.12 | 0.08 | 0.06 | FALSE |
32 | GTEx | Brain Nucleus accumbens basal ganglia | AK9 | 0.28 | 0.02 | enet | 22 | 0.09 | 1.8e-03 | -13.55 | 11.6 | 3.0e-31 | -0.74 | 0.18 | 0.29 | FALSE |
33 | GTEx | Brain Putamen basal ganglia | ARMC2 | 0.34 | 0.26 | lasso | 5 | 0.22 | 7.4e-06 | -5.34 | -5.5 | 4.0e-08 | -0.05 | 0.33 | 0.04 | FALSE |
34 | GTEx | Breast Mammary Tissue | SMPD2 | 0.14 | 0.09 | lasso | 5 | 0.05 | 2.2e-03 | -12.82 | -12.9 | 6.0e-38 | 0.87 | 0.14 | 0.73 | FALSE |
35 | GTEx | Breast Mammary Tissue | AK9 | 0.17 | 0.13 | enet | 19 | 0.13 | 4.0e-07 | -14.05 | 12.0 | 3.8e-33 | -0.91 | 0.02 | 0.98 | FALSE |
36 | GTEx | Breast Mammary Tissue | RP11-425D10.10 | 0.12 | 0.12 | lasso | 1 | 0.08 | 5.1e-05 | -14.05 | -14.0 | 8.2e-45 | 0.97 | 0.05 | 0.95 | FALSE |
37 | GTEx | Breast Mammary Tissue (Male) | SMPD2 | 0.14 | 0.04 | lasso | 4 | 0.07 | 9.4e-03 | 6.59 | -11.1 | 8.8e-29 | 0.81 | 0.10 | 0.38 | FALSE |
38 | GTEx | Breast Mammary Tissue (Male) | AK9 | 0.10 | 0.03 | lasso | 3 | -0.01 | 5.4e-01 | -13.69 | 14.6 | 5.2e-48 | -0.97 | 0.03 | 0.57 | FALSE |
39 | GTEx | Breast Mammary Tissue (Female) | AK9 | 0.12 | 0.15 | lasso | 1 | 0.12 | 1.9e-04 | -14.05 | 14.0 | 8.2e-45 | -0.97 | 0.06 | 0.60 | FALSE |
40 | GTEx | Breast Mammary Tissue (Female) | RP11-425D10.10 | 0.14 | 0.04 | lasso | 10 | 0.02 | 6.5e-02 | -15.26 | -14.9 | 2.1e-50 | 0.98 | 0.03 | 0.50 | FALSE |
41 | GTEx | Cells EBV-transformed lymphocytes | AK9 | 0.32 | 0.13 | lasso | 7 | 0.25 | 1.2e-08 | -13.56 | 11.6 | 6.7e-31 | -0.87 | 0.26 | 0.74 | FALSE |
42 | GTEx | Cells Transformed fibroblasts | FIG4 | 0.13 | 0.12 | lasso | 3 | 0.11 | 8.3e-09 | 6.60 | -5.8 | 5.2e-09 | 0.55 | 1.00 | 0.00 | FALSE |
43 | GTEx | Cells Transformed fibroblasts | SMPD2 | 0.20 | 0.13 | lasso | 9 | 0.15 | 3.1e-11 | -12.82 | -12.9 | 7.8e-38 | 0.90 | 1.00 | 0.00 | FALSE |
44 | GTEx | Cells Transformed fibroblasts | AK9 | 0.14 | 0.17 | lasso | 4 | 0.15 | 2.4e-11 | 7.97 | 8.1 | 7.4e-16 | -0.39 | 1.00 | 0.00 | FALSE |
45 | GTEx | Cells Transformed fibroblasts | PPIL6 | 0.06 | 0.00 | enet | 9 | 0.00 | 4.6e-01 | -3.26 | 10.9 | 1.7e-27 | -0.69 | 0.03 | 0.69 | FALSE |
46 | GTEx | Colon Sigmoid | FIG4 | 0.17 | 0.11 | lasso | 9 | 0.03 | 3.7e-02 | -15.21 | 14.0 | 2.2e-44 | -0.92 | 0.02 | 0.91 | FALSE |
47 | GTEx | Colon Sigmoid | AK9 | 0.13 | 0.06 | enet | 32 | 0.13 | 3.1e-05 | -15.21 | 11.8 | 6.8e-32 | -0.82 | 0.05 | 0.90 | FALSE |
48 | GTEx | Colon Sigmoid | RP11-425D10.10 | 0.13 | 0.00 | enet | 14 | 0.02 | 5.2e-02 | -13.55 | -11.8 | 2.5e-32 | 0.83 | 0.08 | 0.81 | FALSE |
49 | GTEx | Colon Transverse | SMPD2 | 0.19 | 0.25 | lasso | 5 | 0.24 | 1.1e-11 | -12.82 | -13.2 | 1.4e-39 | 0.85 | 0.52 | 0.48 | FALSE |
50 | GTEx | Colon Transverse | AK9 | 0.26 | 0.12 | enet | 46 | 0.12 | 2.6e-06 | -14.05 | 9.7 | 4.0e-22 | -0.75 | 0.16 | 0.83 | FALSE |
51 | GTEx | Colon Transverse | RP11-425D10.10 | 0.12 | 0.13 | enet | 21 | 0.14 | 2.2e-07 | -15.29 | -14.9 | 5.0e-50 | 0.97 | 0.03 | 0.97 | FALSE |
52 | GTEx | Esophagus Gastroesophageal Junction | SMPD2 | 0.11 | 0.06 | lasso | 6 | 0.06 | 4.1e-03 | -11.07 | -12.2 | 4.6e-34 | 0.76 | 0.12 | 0.69 | FALSE |
53 | GTEx | Esophagus Gastroesophageal Junction | AK9 | 0.19 | 0.10 | enet | 25 | 0.13 | 1.7e-05 | 8.53 | 9.5 | 2.1e-21 | -0.63 | 0.11 | 0.87 | FALSE |
54 | GTEx | Esophagus Mucosa | SMPD2 | 0.17 | 0.20 | lasso | 10 | 0.22 | 2.2e-14 | -15.36 | -15.1 | 1.1e-51 | 0.98 | 0.01 | 0.99 | FALSE |
55 | GTEx | Esophagus Mucosa | AK9 | 0.11 | 0.06 | lasso | 13 | 0.04 | 6.0e-04 | -13.55 | 13.7 | 7.3e-43 | -0.90 | 0.05 | 0.95 | FALSE |
56 | GTEx | Esophagus Mucosa | RP11-425D10.10 | 0.09 | 0.13 | lasso | 5 | 0.12 | 1.1e-08 | -14.05 | -14.1 | 4.1e-45 | 0.97 | 0.16 | 0.84 | FALSE |
57 | GTEx | Esophagus Muscularis | FIG4 | 0.14 | 0.02 | enet | 10 | 0.03 | 7.8e-03 | -13.55 | 12.3 | 9.8e-35 | -0.79 | 0.12 | 0.66 | FALSE |
58 | GTEx | Esophagus Muscularis | ARMC2 | 0.16 | 0.02 | lasso | 9 | 0.04 | 1.9e-03 | -5.28 | -5.7 | 1.2e-08 | -0.05 | 0.91 | 0.01 | FALSE |
59 | GTEx | Esophagus Muscularis | CD164 | 0.04 | 0.02 | enet | 6 | 0.01 | 1.0e-01 | -13.63 | -14.3 | 4.1e-46 | 0.95 | 0.05 | 0.82 | FALSE |
60 | GTEx | Esophagus Muscularis | SMPD2 | 0.10 | 0.05 | enet | 13 | 0.05 | 2.9e-04 | -11.90 | -11.1 | 1.2e-28 | 0.61 | 0.20 | 0.48 | FALSE |
61 | GTEx | Esophagus Muscularis | MICAL1 | 0.45 | 0.18 | enet | 24 | 0.26 | 3.7e-16 | -5.08 | -7.2 | 6.0e-13 | 0.22 | 1.00 | 0.00 | FALSE |
62 | GTEx | Esophagus Muscularis | AK9 | 0.41 | 0.22 | enet | 60 | 0.29 | 5.7e-18 | -13.94 | 8.9 | 6.2e-19 | -0.72 | 0.98 | 0.02 | FALSE |
63 | GTEx | Esophagus Muscularis | RP11-425D10.10 | 0.15 | 0.04 | lasso | 11 | 0.09 | 3.9e-06 | -3.26 | -10.8 | 5.1e-27 | 0.77 | 0.04 | 0.96 | FALSE |
64 | GTEx | Heart Atrial Appendage | RP11-425D10.10 | 0.12 | 0.11 | lasso | 5 | 0.07 | 4.0e-04 | -14.05 | -12.9 | 4.5e-38 | 0.91 | 0.08 | 0.89 | FALSE |
65 | GTEx | Heart Left Ventricle | AK9 | 0.17 | 0.04 | enet | 11 | 0.13 | 2.3e-07 | -13.55 | 11.1 | 1.8e-28 | -0.78 | 0.25 | 0.74 | FALSE |
66 | GTEx | Heart Left Ventricle | RP11-425D10.10 | 0.13 | 0.04 | enet | 34 | 0.03 | 9.2e-03 | -13.69 | -10.4 | 2.0e-25 | 0.74 | 0.02 | 0.94 | FALSE |
67 | GTEx | Lung | SMPD2 | 0.10 | 0.12 | lasso | 2 | 0.10 | 7.5e-08 | -12.82 | -12.8 | 1.3e-37 | 0.85 | 0.81 | 0.19 | FALSE |
68 | GTEx | Lung | RP11-425D10.10 | 0.10 | 0.08 | enet | 24 | 0.07 | 6.4e-06 | -15.28 | -13.8 | 1.8e-43 | 0.91 | 0.02 | 0.98 | FALSE |
69 | GTEx | Muscle Skeletal | AK9 | 0.08 | 0.02 | lasso | 6 | 0.03 | 4.3e-04 | 8.47 | 11.8 | 5.0e-32 | -0.70 | 0.15 | 0.83 | FALSE |
70 | GTEx | Muscle Skeletal | RP11-425D10.10 | 0.16 | 0.11 | enet | 24 | 0.14 | 2.9e-13 | -2.75 | -7.3 | 3.7e-13 | 0.60 | 1.00 | 0.00 | FALSE |
71 | GTEx | Nerve Tibial | SMPD2 | 0.12 | 0.08 | lasso | 4 | 0.08 | 3.6e-06 | -11.43 | -12.2 | 5.6e-34 | 0.77 | 0.93 | 0.03 | FALSE |
72 | GTEx | Nerve Tibial | AK9 | 0.18 | 0.15 | enet | 26 | 0.18 | 1.5e-12 | -14.05 | 13.0 | 1.4e-38 | -0.84 | 0.50 | 0.50 | FALSE |
73 | GTEx | Nerve Tibial | RP11-425D10.10 | 0.18 | 0.03 | enet | 19 | 0.11 | 3.7e-08 | -15.29 | -11.7 | 9.8e-32 | 0.76 | 0.03 | 0.97 | FALSE |
74 | GTEx | Ovary | RP11-425D10.10 | 0.15 | 0.10 | lasso | 5 | 0.02 | 9.0e-02 | -14.05 | -14.7 | 1.1e-48 | 0.99 | 0.03 | 0.89 | FALSE |
75 | GTEx | Pancreas | FOXO3 | 0.12 | 0.00 | enet | 17 | 0.05 | 3.0e-03 | -1.83 | -9.3 | 1.9e-20 | -0.08 | 0.06 | 0.17 | TRUE |
76 | GTEx | Pancreas | SMPD2 | 0.09 | 0.07 | lasso | 3 | 0.08 | 2.1e-04 | -12.82 | -12.6 | 1.7e-36 | 0.84 | 0.17 | 0.57 | FALSE |
77 | GTEx | Prostate | ARMC2 | 0.63 | 0.25 | lasso | 7 | 0.23 | 2.1e-06 | -5.29 | -5.4 | 5.6e-08 | -0.05 | 0.86 | 0.01 | FALSE |
78 | GTEx | Skin Not Sun Exposed Suprapubic | SMPD2 | 0.27 | 0.15 | lasso | 10 | 0.17 | 1.6e-09 | -14.05 | -14.0 | 3.0e-44 | 0.94 | 0.11 | 0.89 | FALSE |
79 | GTEx | Skin Not Sun Exposed Suprapubic | AK9 | 0.07 | 0.00 | enet | 15 | 0.01 | 5.3e-02 | 5.13 | 8.7 | 2.8e-18 | -0.67 | 0.27 | 0.26 | FALSE |
80 | GTEx | Skin Not Sun Exposed Suprapubic | RP11-425D10.10 | 0.20 | 0.27 | lasso | 5 | 0.27 | 5.5e-15 | -13.94 | -14.3 | 1.5e-46 | 0.98 | 0.45 | 0.55 | FALSE |
81 | GTEx | Skin Sun Exposed Lower leg | SMPD2 | 0.19 | 0.19 | lasso | 12 | 0.24 | 1.6e-19 | -13.56 | -14.6 | 4.4e-48 | 0.96 | 0.53 | 0.47 | FALSE |
82 | GTEx | Skin Sun Exposed Lower leg | AK9 | 0.14 | 0.12 | lasso | 3 | 0.14 | 1.9e-11 | -14.05 | 13.5 | 2.1e-41 | -0.93 | 0.55 | 0.45 | FALSE |
83 | GTEx | Skin Sun Exposed Lower leg | RP11-425D10.10 | 0.19 | 0.23 | enet | 18 | 0.23 | 3.4e-19 | -13.94 | -13.9 | 8.5e-44 | 0.95 | 0.99 | 0.01 | FALSE |
84 | GTEx | Small Intestine Terminal Ileum | RP11-425D10.10 | 0.16 | 0.07 | lasso | 9 | 0.06 | 1.5e-02 | -15.34 | -14.6 | 4.0e-48 | 0.93 | 0.03 | 0.70 | FALSE |
85 | GTEx | Spleen | RP11-425D10.10 | 0.17 | 0.04 | enet | 26 | 0.12 | 4.7e-04 | -13.69 | -12.3 | 1.6e-34 | 0.65 | 0.04 | 0.87 | FALSE |
86 | GTEx | Stomach | SMPD2 | 0.14 | -0.01 | lasso | 5 | -0.01 | 8.6e-01 | -11.90 | -9.0 | 2.5e-19 | 0.46 | 0.08 | 0.08 | FALSE |
87 | GTEx | Stomach | RP11-425D10.10 | 0.25 | 0.10 | lasso | 6 | 0.09 | 3.0e-05 | -14.12 | -13.3 | 3.8e-40 | 0.82 | 0.03 | 0.97 | FALSE |
88 | GTEx | Testis | ZBTB24 | 0.11 | 0.11 | lasso | 4 | 0.10 | 4.9e-05 | -14.05 | 14.0 | 1.9e-44 | -0.94 | 0.26 | 0.65 | FALSE |
89 | GTEx | Testis | SMPD2 | 0.28 | 0.18 | lasso | 7 | 0.17 | 7.6e-08 | -12.82 | -13.3 | 2.6e-40 | 0.88 | 0.50 | 0.50 | FALSE |
90 | GTEx | Testis | MICAL1 | 0.28 | 0.02 | enet | 25 | 0.02 | 4.2e-02 | -7.51 | -10.4 | 1.7e-25 | 0.59 | 0.03 | 0.80 | FALSE |
91 | GTEx | Testis | RP11-425D10.10 | 0.10 | 0.07 | enet | 13 | 0.06 | 8.6e-04 | 4.72 | -9.3 | 1.6e-20 | 0.73 | 0.67 | 0.20 | FALSE |
92 | GTEx | Thyroid | AK9 | 0.11 | 0.08 | enet | 22 | 0.13 | 1.9e-10 | -15.22 | 13.0 | 1.5e-38 | -0.92 | 0.02 | 0.98 | FALSE |
93 | GTEx | Thyroid | PPIL6 | 0.17 | 0.05 | lasso | 4 | 0.12 | 4.4e-09 | -15.35 | 12.0 | 6.1e-33 | -0.82 | 0.01 | 0.99 | FALSE |
94 | GTEx | Thyroid | RP11-425D10.10 | 0.20 | 0.05 | enet | 26 | 0.11 | 5.9e-09 | -3.26 | -11.1 | 1.5e-28 | 0.72 | 0.08 | 0.92 | FALSE |
95 | GTEx | Vagina | RP11-425D10.10 | 0.42 | 0.22 | lasso | 19 | 0.17 | 9.0e-05 | -14.05 | -14.8 | 1.6e-49 | 0.98 | 0.03 | 0.95 | FALSE |
96 | GTEx | Whole Blood | SMPD2 | 0.15 | 0.16 | lasso | 8 | 0.15 | 1.0e-13 | -12.82 | -12.6 | 2.5e-36 | 0.88 | 0.99 | 0.01 | FALSE |
97 | GTEx | Whole Blood | RP11-425D10.10 | 0.04 | 0.03 | enet | 16 | 0.03 | 6.2e-04 | -13.69 | -14.8 | 1.5e-49 | 0.96 | 0.04 | 0.95 | FALSE |
98 | METSIM | Adipose | AK9 | 0.05 | 0.03 | lasso | 6 | 0.02 | 1.0e-04 | -13.69 | 14.5 | 2.1e-47 | -0.95 | 0.03 | 0.97 | FALSE |
99 | METSIM | Adipose | FIG4 | 0.06 | 0.00 | bslmm | 484 | 0.01 | 7.1e-03 | -9.65 | 12.5 | 1.0e-35 | -0.59 | 0.04 | 0.78 | FALSE |
100 | METSIM | Adipose | MICAL1 | 0.06 | 0.01 | bslmm | 392 | 0.03 | 3.9e-05 | -12.70 | 6.4 | 1.5e-10 | -0.36 | 0.94 | 0.01 | FALSE |
101 | METSIM | Adipose | SMPD2 | 0.06 | 0.08 | enet | 14 | 0.08 | 2.0e-12 | -12.82 | -13.8 | 1.7e-43 | 0.89 | 0.46 | 0.54 | FALSE |
102 | NTR | Blood | PPIL6 | 0.02 | 0.01 | blup | 393 | 0.01 | 2.0e-03 | -13.69 | -9.1 | 8.4e-20 | 0.78 | 0.05 | 0.89 | FALSE |
103 | NTR | Blood | SESN1 | 0.03 | 0.04 | lasso | 3 | 0.03 | 5.4e-11 | 5.37 | 5.4 | 8.0e-08 | 0.12 | 1.00 | 0.00 | FALSE |
104 | ROSMAP | Brain Pre-frontal Cortex | ZBTB24 | 0.03 | 0.00 | blup | 389 | 0.00 | 7.3e-02 | -13.69 | 12.0 | 6.0e-33 | -0.86 | 0.04 | 0.89 | FALSE |
105 | ROSMAP | Brain Pre-frontal Cortex | FIG4 | 0.14 | 0.13 | lasso | 6 | 0.14 | 3.8e-17 | -9.65 | 12.9 | 3.4e-38 | -0.76 | 0.88 | 0.12 | FALSE |
106 | ROSMAP | Brain Pre-frontal Cortex | CD164 | 0.07 | 0.01 | enet | 16 | 0.05 | 1.6e-07 | -14.12 | 10.4 | 1.9e-25 | -0.64 | 0.10 | 0.88 | FALSE |
107 | ROSMAP | Brain Pre-frontal Cortex | SMPD2 | 0.12 | 0.10 | lasso | 5 | 0.09 | 1.3e-11 | -12.90 | -11.1 | 1.7e-28 | 0.74 | 1.00 | 0.00 | FALSE |
108 | ROSMAP | Brain Pre-frontal Cortex | MICAL1 | 0.21 | 0.17 | bslmm | 372 | 0.18 | 2.9e-23 | -12.90 | 11.2 | 2.5e-29 | -0.60 | 1.00 | 0.00 | FALSE |
109 | ROSMAP | Brain Pre-frontal Cortex | AK9 | 0.08 | 0.06 | bslmm | 456 | 0.06 | 5.3e-08 | -14.04 | 12.5 | 4.6e-36 | -0.79 | 0.05 | 0.95 | FALSE |
110 | ROSMAP | Brain Pre-frontal Cortex | RP11-425D10.10 | 0.05 | 0.01 | blup | 367 | 0.02 | 5.0e-04 | -13.73 | -11.3 | 1.7e-29 | 0.82 | 0.13 | 0.86 | FALSE |
111 | YFS | Blood | CD164 | 0.03 | 0.01 | blup | 382 | 0.02 | 1.9e-07 | 4.11 | -8.5 | 1.9e-17 | 0.24 | 1.00 | 0.00 | TRUE |
112 | YFS | Blood | FIG4 | 0.04 | 0.04 | blup | 478 | 0.04 | 2.7e-13 | 6.33 | 5.7 | 1.2e-08 | -0.49 | 1.00 | 0.00 | FALSE |
113 | YFS | Blood | FOXO3 | 0.03 | 0.01 | lasso | 3 | 0.02 | 3.2e-07 | -13.30 | 9.4 | 6.0e-21 | 0.00 | 0.68 | 0.32 | TRUE |
114 | YFS | Blood | SMPD2 | 0.06 | 0.08 | lasso | 7 | 0.08 | 2.5e-24 | -12.90 | -13.4 | 9.8e-41 | 0.87 | 1.00 | 0.00 | FALSE |
115 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | AKD1 | 0.08 | 0.06 | blup | 114 | 0.05 | 4.7e-05 | -13.56 | 13.7 | 1.5e-42 | -0.87 | 0.06 | 0.93 | FALSE |
116 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | ARMC2 | 0.04 | 0.05 | lasso | 1 | 0.04 | 3.4e-04 | 5.40 | -5.4 | 6.7e-08 | -0.11 | 0.04 | 0.82 | FALSE |
117 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | SMPD2 | 0.04 | 0.04 | blup | 43 | 0.05 | 3.9e-05 | -15.29 | -14.1 | 2.2e-45 | 0.96 | 0.01 | 0.98 | FALSE |
118 | The Cancer Genome Atlas | Breast Invasive Carcinoma | AKD1 | 0.02 | 0.02 | blup | 122 | 0.03 | 1.0e-06 | -13.55 | 11.8 | 4.8e-32 | -0.88 | 0.04 | 0.96 | FALSE |
119 | The Cancer Genome Atlas | Breast Invasive Carcinoma | PPIL6 | 0.05 | 0.04 | enet | 9 | 0.06 | 3.9e-12 | -3.28 | 8.9 | 5.4e-19 | -0.69 | 0.94 | 0.06 | FALSE |
120 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SMPD2 | 0.04 | 0.07 | lasso | 4 | 0.07 | 8.8e-14 | -12.82 | -13.3 | 2.6e-40 | 0.86 | 0.91 | 0.09 | FALSE |
121 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | AKD1 | 0.07 | 0.04 | blup | 122 | 0.05 | 2.1e-03 | 6.58 | 6.2 | 7.1e-10 | -0.57 | 0.28 | 0.55 | FALSE |
122 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | SMPD2 | 0.07 | 0.08 | blup | 45 | 0.07 | 2.3e-04 | -12.82 | -14.4 | 8.2e-47 | 0.92 | 0.04 | 0.92 | FALSE |
123 | The Cancer Genome Atlas | Colon Adenocarcinoma | AKD1 | 0.14 | 0.09 | enet | 15 | 0.14 | 2.4e-08 | 6.57 | 8.9 | 6.8e-19 | -0.73 | 0.24 | 0.76 | FALSE |
124 | The Cancer Genome Atlas | Colon Adenocarcinoma | SMPD2 | 0.17 | 0.14 | lasso | 4 | 0.14 | 2.3e-08 | -12.20 | -12.6 | 1.9e-36 | 0.79 | 0.61 | 0.39 | FALSE |
125 | The Cancer Genome Atlas | Esophageal Carcinoma | SMPD2 | 0.12 | 0.09 | blup | 41 | 0.07 | 2.6e-03 | -15.27 | -15.1 | 1.4e-51 | 0.99 | 0.01 | 0.90 | FALSE |
126 | The Cancer Genome Atlas | Glioblastoma Multiforme | SMPD2 | 0.18 | 0.08 | enet | 17 | 0.11 | 2.5e-04 | -12.20 | -11.2 | 5.7e-29 | 0.72 | 0.04 | 0.56 | FALSE |
127 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | AKD1 | 0.07 | 0.06 | blup | 116 | 0.06 | 4.2e-07 | -15.28 | 13.6 | 3.7e-42 | -0.93 | 0.02 | 0.98 | FALSE |
128 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | SMPD2 | 0.09 | 0.09 | blup | 42 | 0.10 | 2.1e-11 | -14.12 | -13.1 | 1.7e-39 | 0.75 | 0.36 | 0.64 | FALSE |
129 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | AKD1 | 0.11 | 0.08 | lasso | 5 | 0.10 | 5.8e-11 | -15.22 | 13.6 | 5.5e-42 | -0.91 | 0.02 | 0.98 | FALSE |
130 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CD164 | 0.06 | 0.00 | enet | 12 | 0.02 | 2.0e-03 | -9.94 | -6.2 | 4.9e-10 | 0.58 | 0.01 | 0.62 | FALSE |
131 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | FIG4 | 0.07 | 0.02 | lasso | 2 | 0.04 | 5.5e-05 | 8.47 | 8.3 | 9.1e-17 | -0.47 | 0.13 | 0.47 | FALSE |
132 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MICAL1 | 0.04 | 0.01 | blup | 51 | 0.02 | 6.3e-03 | -3.35 | -6.3 | 2.4e-10 | 0.42 | 0.06 | 0.12 | FALSE |
133 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SMPD2 | 0.05 | 0.07 | lasso | 4 | 0.06 | 9.6e-08 | -12.20 | -13.5 | 1.7e-41 | 0.84 | 0.34 | 0.66 | FALSE |
134 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | AKD1 | 0.11 | 0.06 | lasso | 3 | 0.06 | 2.7e-04 | -13.55 | 13.6 | 3.5e-42 | -0.91 | 0.04 | 0.96 | FALSE |
135 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | SMPD2 | 0.12 | 0.15 | enet | 6 | 0.14 | 3.8e-08 | -12.82 | -12.8 | 8.7e-38 | 0.85 | 0.73 | 0.27 | FALSE |
136 | The Cancer Genome Atlas | Brain Lower Grade Glioma | AKD1 | 0.12 | 0.11 | lasso | 6 | 0.12 | 9.8e-14 | -13.55 | 13.8 | 1.7e-43 | -0.91 | 0.35 | 0.65 | FALSE |
137 | The Cancer Genome Atlas | Brain Lower Grade Glioma | FIG4 | 0.05 | 0.02 | blup | 92 | 0.02 | 1.0e-03 | -13.63 | 12.8 | 1.6e-37 | -0.81 | 0.01 | 0.98 | FALSE |
138 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MICAL1 | 0.08 | 0.11 | lasso | 4 | 0.12 | 1.8e-13 | -12.20 | 12.7 | 3.7e-37 | -0.81 | 0.94 | 0.06 | FALSE |
139 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PPIL6 | 0.05 | 0.04 | blup | 53 | 0.02 | 1.8e-03 | -2.75 | 8.6 | 5.4e-18 | -0.57 | 0.14 | 0.49 | FALSE |
140 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ZBTB24 | 0.04 | 0.05 | lasso | 4 | 0.04 | 7.8e-06 | -15.22 | 15.0 | 1.5e-50 | -0.97 | 0.01 | 0.99 | FALSE |
141 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | PPIL6 | 0.07 | 0.03 | blup | 53 | 0.02 | 5.8e-02 | -12.82 | 14.8 | 1.5e-49 | -0.94 | 0.02 | 0.55 | FALSE |
142 | The Cancer Genome Atlas | Lung Adenocarcinoma | AKD1 | 0.05 | 0.03 | blup | 122 | 0.04 | 1.3e-05 | -13.93 | 14.9 | 3.8e-50 | -0.93 | 0.02 | 0.98 | FALSE |
143 | The Cancer Genome Atlas | Lung Adenocarcinoma | SMPD2 | 0.06 | 0.09 | enet | 11 | 0.08 | 4.7e-10 | -12.82 | -12.3 | 1.0e-34 | 0.85 | 0.71 | 0.29 | FALSE |
144 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | AKD1 | 0.06 | 0.07 | lasso | 4 | 0.05 | 2.8e-06 | -13.63 | 12.7 | 8.1e-37 | -0.88 | 0.28 | 0.72 | FALSE |
145 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | SMPD2 | 0.04 | 0.06 | blup | 45 | 0.06 | 8.9e-08 | -14.02 | -13.5 | 1.0e-41 | 0.90 | 0.07 | 0.93 | FALSE |
146 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | AKD1 | 0.04 | 0.03 | blup | 114 | 0.03 | 4.7e-03 | -13.57 | 12.2 | 2.3e-34 | -0.89 | 0.08 | 0.51 | FALSE |
147 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | SMPD2 | 0.06 | 0.05 | lasso | 3 | 0.06 | 9.2e-05 | -12.82 | -12.6 | 3.3e-36 | 0.80 | 0.24 | 0.65 | FALSE |
148 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | AKD1 | 0.08 | 0.03 | blup | 114 | 0.05 | 4.9e-03 | 6.57 | 10.0 | 1.4e-23 | -0.75 | 0.15 | 0.43 | FALSE |
149 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | SMPD2 | 0.08 | 0.07 | lasso | 3 | 0.05 | 3.3e-03 | -12.82 | -12.8 | 1.3e-37 | 0.85 | 0.05 | 0.77 | FALSE |
150 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | SMPD2 | 0.10 | 0.04 | lasso | 2 | 0.07 | 1.2e-03 | -12.20 | -10.7 | 6.2e-27 | 0.73 | 0.03 | 0.48 | FALSE |
151 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SESN1 | 0.02 | 0.04 | lasso | 4 | 0.04 | 1.1e-04 | 5.39 | 5.4 | 7.0e-08 | 0.12 | 0.02 | 0.96 | FALSE |
152 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SMPD2 | 0.08 | 0.13 | lasso | 3 | 0.13 | 2.4e-13 | -12.82 | -12.8 | 1.3e-37 | 0.85 | 0.99 | 0.01 | FALSE |
153 | The Cancer Genome Atlas | Rectum Adenocarcinoma | AKD1 | 0.26 | 0.12 | blup | 114 | 0.18 | 6.5e-05 | 6.43 | 11.7 | 8.4e-32 | -0.82 | 0.12 | 0.61 | FALSE |
154 | The Cancer Genome Atlas | Rectum Adenocarcinoma | SMPD2 | 0.13 | 0.08 | lasso | 2 | 0.06 | 1.5e-02 | -12.82 | -12.8 | 1.3e-37 | 0.85 | 0.01 | 0.37 | FALSE |
155 | The Cancer Genome Atlas | Stomach Adenocarcinoma | AKD1 | 0.03 | 0.03 | blup | 121 | 0.02 | 6.3e-03 | -15.22 | 12.5 | 5.5e-36 | -0.91 | 0.03 | 0.83 | FALSE |
156 | The Cancer Genome Atlas | Stomach Adenocarcinoma | MICAL1 | 0.09 | 0.01 | blup | 50 | 0.01 | 3.5e-02 | -2.40 | 5.2 | 1.6e-07 | -0.33 | 0.03 | 0.12 | FALSE |
157 | The Cancer Genome Atlas | Stomach Adenocarcinoma | SMPD2 | 0.07 | 0.07 | blup | 44 | 0.08 | 3.4e-06 | -15.22 | -14.4 | 2.6e-47 | 0.95 | 0.02 | 0.98 | FALSE |
158 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | SMPD2 | 0.23 | 0.13 | lasso | 5 | 0.17 | 1.4e-06 | -13.94 | -13.9 | 9.4e-44 | 0.91 | 0.01 | 0.98 | FALSE |
159 | The Cancer Genome Atlas | Thyroid Carcinoma | AKD1 | 0.24 | 0.18 | enet | 21 | 0.26 | 2.5e-25 | -13.56 | 11.9 | 1.3e-32 | -0.87 | 0.04 | 0.96 | FALSE |
160 | The Cancer Genome Atlas | Thyroid Carcinoma | CD164 | 0.03 | 0.01 | blup | 49 | 0.01 | 2.1e-02 | -12.90 | -12.2 | 2.6e-34 | 0.82 | 0.04 | 0.55 | FALSE |
161 | The Cancer Genome Atlas | Thyroid Carcinoma | FIG4 | 0.08 | 0.06 | enet | 20 | 0.08 | 3.2e-08 | -13.55 | 11.0 | 4.6e-28 | -0.76 | 0.01 | 0.99 | FALSE |
162 | The Cancer Genome Atlas | Thyroid Carcinoma | PPIL6 | 0.10 | 0.09 | enet | 11 | 0.08 | 7.7e-08 | -3.26 | 7.4 | 1.9e-13 | -0.52 | 0.87 | 0.12 | FALSE |
163 | The Cancer Genome Atlas | Thyroid Carcinoma | SMPD2 | 0.15 | 0.17 | enet | 14 | 0.18 | 9.4e-18 | -12.82 | -10.8 | 2.2e-27 | 0.73 | 1.00 | 0.00 | FALSE |
164 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | FIG4 | 0.24 | 0.05 | enet | 15 | 0.01 | 2.0e-01 | -8.98 | 6.8 | 7.4e-12 | -0.37 | 0.02 | 0.22 | FALSE |
165 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | LACE1 | 0.54 | 0.04 | blup | 77 | 0.10 | 8.8e-04 | -3.87 | 5.4 | 7.2e-08 | 0.01 | 0.01 | 0.10 | FALSE |