Best TWAS P=6.8e-41 · Best GWAS P=3.77e-39 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | KIAA1683 | 0.09 | 0.06 | enet | 14 | 0.10 | 6.6e-12 | -8.29 | 11.3 | 1.4e-29 | 0.78 | 0.02 | 0.98 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | PDE4C | 0.14 | 0.16 | lasso | 4 | 0.15 | 2.8e-18 | -8.15 | -7.9 | 2.9e-15 | -0.46 | 1.00 | 0.00 | FALSE |
3 | GTEx | Adipose Subcutaneous | KIAA1683 | 0.14 | 0.09 | enet | 6 | 0.16 | 2.5e-13 | -7.27 | 10.9 | 1.2e-27 | 0.80 | 0.01 | 0.99 | FALSE |
4 | GTEx | Adipose Subcutaneous | AC005253.4 | 0.11 | 0.06 | enet | 23 | 0.04 | 1.6e-04 | -1.44 | 7.2 | 7.9e-13 | 0.38 | 0.18 | 0.54 | FALSE |
5 | GTEx | Adrenal Gland | KIAA1683 | 0.26 | 0.05 | enet | 21 | 0.19 | 1.7e-07 | -7.38 | 7.7 | 1.0e-14 | 0.58 | 0.05 | 0.92 | FALSE |
6 | GTEx | Artery Tibial | KIAA1683 | 0.16 | 0.08 | enet | 11 | 0.15 | 8.2e-12 | -7.27 | 8.8 | 1.9e-18 | 0.60 | 0.48 | 0.52 | FALSE |
7 | GTEx | Artery Tibial | HAUS8 | 0.16 | 0.02 | lasso | 7 | 0.02 | 4.7e-03 | 4.96 | -5.8 | 6.2e-09 | -0.02 | 0.26 | 0.65 | FALSE |
8 | GTEx | Artery Tibial | CTD-3032J10.3 | 0.14 | 0.01 | lasso | 5 | 0.01 | 6.4e-02 | 7.54 | -7.3 | 2.4e-13 | 0.00 | 0.00 | 0.94 | TRUE |
9 | GTEx | Breast Mammary Tissue | KIAA1683 | 0.17 | 0.10 | lasso | 5 | 0.07 | 1.2e-04 | -8.68 | 9.0 | 2.3e-19 | 0.60 | 0.08 | 0.91 | FALSE |
10 | GTEx | Breast Mammary Tissue (Female) | KIAA1683 | 0.18 | 0.03 | lasso | 2 | 0.03 | 5.2e-02 | -7.33 | 7.3 | 2.0e-13 | 0.42 | 0.04 | 0.25 | FALSE |
11 | GTEx | Cells Transformed fibroblasts | KIAA1683 | 0.14 | 0.16 | lasso | 2 | 0.15 | 1.2e-11 | -7.27 | 8.9 | 8.2e-19 | 0.61 | 0.87 | 0.13 | FALSE |
12 | GTEx | Cells Transformed fibroblasts | HAUS8 | 0.12 | 0.05 | enet | 19 | 0.05 | 1.0e-04 | 4.96 | -6.3 | 2.4e-10 | -0.04 | 0.43 | 0.44 | FALSE |
13 | GTEx | Cells Transformed fibroblasts | AC005253.2 | 0.15 | 0.01 | enet | 23 | 0.03 | 1.3e-03 | -1.44 | 5.3 | 1.1e-07 | 0.18 | 0.21 | 0.14 | TRUE |
14 | GTEx | Colon Sigmoid | KIAA1683 | 0.15 | 0.09 | lasso | 6 | 0.09 | 5.1e-04 | -8.68 | 9.8 | 9.4e-23 | 0.67 | 0.03 | 0.91 | FALSE |
15 | GTEx | Colon Transverse | SSBP4 | 0.18 | 0.01 | enet | 21 | 0.00 | 3.6e-01 | 6.70 | -7.6 | 4.2e-14 | -0.38 | 0.06 | 0.23 | FALSE |
16 | GTEx | Colon Transverse | KIAA1683 | 0.15 | 0.02 | lasso | 3 | 0.02 | 3.3e-02 | -8.68 | 12.1 | 1.2e-33 | 0.87 | 0.00 | 0.98 | FALSE |
17 | GTEx | Esophagus Muscularis | MYO9B | 0.13 | 0.02 | lasso | 5 | 0.05 | 9.5e-04 | 2.49 | -6.1 | 9.1e-10 | -0.02 | 0.05 | 0.93 | FALSE |
18 | GTEx | Esophagus Muscularis | KIAA1683 | 0.10 | 0.04 | lasso | 3 | 0.06 | 1.1e-04 | -7.27 | 11.1 | 9.2e-29 | 0.80 | 0.01 | 0.99 | FALSE |
19 | GTEx | Heart Atrial Appendage | KIAA1683 | 0.15 | 0.03 | lasso | 5 | 0.10 | 2.4e-05 | 13.09 | 9.1 | 7.5e-20 | 0.67 | 0.01 | 0.97 | FALSE |
20 | GTEx | Heart Left Ventricle | KIAA1683 | 0.20 | 0.03 | lasso | 7 | 0.15 | 2.9e-08 | -8.68 | 9.0 | 1.6e-19 | 0.67 | 0.01 | 0.99 | FALSE |
21 | GTEx | Muscle Skeletal | PDE4C | 0.11 | 0.05 | lasso | 6 | 0.06 | 7.7e-07 | -7.40 | -9.1 | 7.7e-20 | -0.54 | 0.98 | 0.02 | FALSE |
22 | GTEx | Muscle Skeletal | HAUS8 | 0.15 | 0.10 | lasso | 4 | 0.08 | 1.6e-08 | 5.00 | -5.6 | 2.2e-08 | -0.01 | 1.00 | 0.00 | FALSE |
23 | GTEx | Muscle Skeletal | AC068499.10 | 0.10 | 0.07 | lasso | 4 | 0.07 | 2.5e-07 | -8.65 | -9.0 | 1.7e-19 | -0.55 | 0.92 | 0.07 | FALSE |
24 | GTEx | Nerve Tibial | KIAA1683 | 0.25 | 0.22 | lasso | 9 | 0.28 | 5.2e-20 | 13.04 | 12.4 | 3.8e-35 | 0.87 | 0.00 | 1.00 | FALSE |
25 | GTEx | Ovary | PGPEP1 | 0.42 | 0.18 | enet | 31 | 0.14 | 3.5e-04 | 2.25 | -7.2 | 4.4e-13 | -0.29 | 0.09 | 0.10 | TRUE |
26 | GTEx | Pancreas | AC007192.6 | 0.19 | 0.00 | enet | 28 | 0.01 | 1.3e-01 | 8.37 | -8.1 | 5.0e-16 | -0.48 | 0.06 | 0.24 | FALSE |
27 | GTEx | Pituitary | KIAA1683 | 0.43 | 0.25 | lasso | 3 | 0.17 | 3.9e-05 | 10.98 | 10.7 | 8.9e-27 | 0.80 | 0.01 | 0.93 | FALSE |
28 | GTEx | Prostate | KIAA1683 | 0.20 | 0.27 | lasso | 1 | 0.23 | 1.8e-06 | -7.27 | 7.3 | 3.7e-13 | 0.48 | 0.29 | 0.10 | FALSE |
29 | GTEx | Skin Not Sun Exposed Suprapubic | KIAA1683 | 0.16 | 0.05 | enet | 12 | 0.06 | 3.5e-04 | -7.27 | 8.7 | 2.4e-18 | 0.64 | 0.22 | 0.74 | FALSE |
30 | GTEx | Skin Sun Exposed Lower leg | KIAA1683 | 0.09 | 0.04 | enet | 9 | 0.06 | 1.0e-05 | -7.27 | 6.6 | 4.0e-11 | 0.49 | 0.39 | 0.52 | FALSE |
31 | GTEx | Spleen | KIAA1683 | 0.26 | 0.17 | lasso | 6 | 0.13 | 3.9e-04 | -7.27 | 8.2 | 3.4e-16 | 0.52 | 0.28 | 0.18 | FALSE |
32 | GTEx | Thyroid | KIAA1683 | 0.11 | 0.07 | enet | 14 | 0.12 | 2.1e-09 | 10.98 | 11.8 | 2.8e-32 | 0.75 | 0.02 | 0.97 | FALSE |
33 | GTEx | Vagina | LRRC25 | 0.63 | 0.02 | enet | 2 | 0.04 | 5.3e-02 | 13.04 | -13.1 | 4.2e-39 | -1.00 | 0.01 | 0.72 | FALSE |
34 | METSIM | Adipose | IFI30 | 0.03 | 0.01 | blup | 420 | 0.02 | 2.6e-04 | -7.50 | 8.3 | 7.1e-17 | 0.38 | 0.35 | 0.22 | FALSE |
35 | METSIM | Adipose | IL12RB1 | 0.05 | 0.05 | lasso | 3 | 0.04 | 2.8e-07 | 6.51 | -6.1 | 1.4e-09 | -0.29 | 0.98 | 0.01 | FALSE |
36 | METSIM | Adipose | KIAA1683 | 0.21 | 0.24 | enet | 21 | 0.27 | 2.1e-40 | -7.28 | 9.6 | 7.7e-22 | 0.62 | 1.00 | 0.00 | FALSE |
37 | NTR | Blood | IFI30 | 0.03 | 0.02 | lasso | 6 | 0.02 | 8.8e-08 | 8.53 | 8.4 | 4.4e-17 | 0.47 | 0.98 | 0.00 | FALSE |
38 | ROSMAP | Brain Pre-frontal Cortex | PDE4C | 0.18 | 0.12 | enet | 17 | 0.19 | 3.3e-24 | -8.15 | -9.7 | 2.0e-22 | -0.57 | 1.00 | 0.00 | TRUE |
39 | ROSMAP | Brain Pre-frontal Cortex | KIAA1683 | 0.23 | 0.14 | bslmm | 409 | 0.24 | 1.4e-30 | -7.27 | 11.0 | 3.7e-28 | 0.83 | 0.00 | 1.00 | TRUE |
40 | ROSMAP | Brain Pre-frontal Cortex | JUND | 0.17 | 0.17 | lasso | 5 | 0.20 | 2.7e-25 | 13.04 | 12.9 | 6.7e-38 | 0.92 | 0.00 | 1.00 | FALSE |
41 | ROSMAP | Brain Pre-frontal Cortex | HAUS8 | 0.05 | 0.05 | enet | 7 | 0.05 | 7.1e-07 | 4.93 | -5.1 | 3.1e-07 | 0.00 | 0.41 | 0.58 | FALSE |
42 | YFS | Blood | IFI30 | 0.08 | 0.04 | bslmm | 405 | 0.08 | 1.1e-23 | -3.51 | 7.2 | 7.3e-13 | 0.42 | 1.00 | 0.00 | FALSE |
43 | YFS | Blood | KIAA1683 | 0.51 | 0.40 | enet | 65 | 0.46 | 9.9e-171 | 13.09 | 11.8 | 4.4e-32 | 0.91 | 0.00 | 1.00 | FALSE |
44 | YFS | Blood | MAST3 | 0.06 | 0.04 | lasso | 5 | 0.04 | 4.2e-12 | 8.37 | -7.9 | 2.6e-15 | -0.40 | 1.00 | 0.00 | FALSE |
45 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | IL12RB1 | 0.07 | 0.02 | lasso | 3 | 0.01 | 6.4e-02 | 6.51 | -6.3 | 2.5e-10 | -0.32 | 0.13 | 0.16 | TRUE |
46 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | KIAA1683 | 0.05 | 0.04 | enet | 6 | 0.05 | 4.9e-05 | -7.27 | 10.4 | 3.2e-25 | 0.73 | 0.05 | 0.88 | FALSE |
47 | The Cancer Genome Atlas | Breast Invasive Carcinoma | HAUS8 | 0.05 | 0.06 | enet | 12 | 0.06 | 2.9e-12 | 5.00 | -5.5 | 4.0e-08 | -0.01 | 1.00 | 0.00 | FALSE |
48 | The Cancer Genome Atlas | Breast Invasive Carcinoma | KIAA1683 | 0.04 | 0.02 | blup | 65 | 0.03 | 2.6e-07 | -7.35 | 8.2 | 1.8e-16 | 0.62 | 0.71 | 0.26 | FALSE |
49 | The Cancer Genome Atlas | Colon Adenocarcinoma | HAUS8 | 0.12 | 0.06 | lasso | 5 | 0.06 | 1.8e-04 | 4.96 | -5.4 | 5.5e-08 | -0.05 | 0.22 | 0.62 | FALSE |
50 | The Cancer Genome Atlas | Colon Adenocarcinoma | ISYNA1 | 0.08 | 0.09 | lasso | 4 | 0.09 | 7.0e-06 | -5.28 | -5.3 | 1.4e-07 | 0.04 | 0.00 | 0.99 | FALSE |
51 | The Cancer Genome Atlas | Glioblastoma Multiforme | JUND | 0.17 | 0.00 | blup | 57 | 0.03 | 5.4e-02 | 13.04 | 13.4 | 6.8e-41 | 0.71 | 0.00 | 0.70 | TRUE |
52 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | HAUS8 | 0.08 | 0.07 | blup | 55 | 0.07 | 6.7e-08 | 4.96 | -5.6 | 2.0e-08 | -0.01 | 0.99 | 0.01 | FALSE |
53 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | KIAA1683 | 0.05 | 0.03 | lasso | 4 | 0.04 | 9.1e-06 | -8.29 | 10.1 | 3.4e-24 | 0.68 | 0.16 | 0.84 | FALSE |
54 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ELL | 0.06 | 0.01 | blup | 48 | 0.03 | 4.8e-04 | -5.28 | -5.9 | 3.1e-09 | 0.05 | 0.01 | 0.95 | TRUE |
55 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | IL12RB1 | 0.10 | 0.08 | blup | 58 | 0.09 | 6.9e-10 | 6.70 | -6.3 | 3.0e-10 | -0.29 | 1.00 | 0.00 | FALSE |
56 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | JUND | 0.05 | 0.04 | lasso | 1 | 0.04 | 4.3e-05 | 13.04 | 13.0 | 6.8e-39 | 1.00 | 0.00 | 0.99 | FALSE |
57 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | KIAA1683 | 0.09 | 0.07 | lasso | 8 | 0.12 | 2.1e-13 | -7.35 | 10.8 | 3.7e-27 | 0.75 | 0.24 | 0.76 | FALSE |
58 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MAST3 | 0.04 | 0.02 | blup | 65 | 0.01 | 7.3e-02 | 8.37 | -6.0 | 1.7e-09 | -0.32 | 0.01 | 0.52 | FALSE |
59 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | JUND | 0.11 | 0.03 | blup | 58 | 0.04 | 1.4e-03 | -0.77 | 9.7 | 2.6e-22 | 0.57 | 0.03 | 0.43 | TRUE |
60 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | KIAA1683 | 0.13 | 0.02 | blup | 65 | 0.05 | 1.0e-03 | 11.10 | 10.8 | 3.4e-27 | 0.79 | 0.00 | 0.98 | FALSE |
61 | The Cancer Genome Atlas | Brain Lower Grade Glioma | IL12RB1 | 0.05 | 0.03 | lasso | 3 | 0.03 | 1.3e-04 | 6.51 | -6.0 | 1.9e-09 | -0.29 | 0.27 | 0.34 | FALSE |
62 | The Cancer Genome Atlas | Brain Lower Grade Glioma | JUND | 0.04 | 0.03 | lasso | 2 | 0.02 | 7.9e-04 | 13.04 | 13.1 | 4.6e-39 | 0.99 | 0.00 | 0.99 | FALSE |
63 | The Cancer Genome Atlas | Brain Lower Grade Glioma | KIAA1683 | 0.16 | 0.11 | lasso | 6 | 0.11 | 2.9e-12 | -7.27 | 10.1 | 4.6e-24 | 0.70 | 0.88 | 0.12 | FALSE |
64 | The Cancer Genome Atlas | Lung Adenocarcinoma | ARRDC2 | 0.04 | 0.01 | enet | 7 | 0.03 | 5.3e-04 | 2.48 | 5.2 | 1.6e-07 | 0.15 | 0.02 | 0.05 | FALSE |
65 | The Cancer Genome Atlas | Lung Adenocarcinoma | IL12RB1 | 0.10 | 0.08 | enet | 13 | 0.07 | 3.9e-08 | 6.70 | -7.3 | 3.7e-13 | -0.29 | 0.99 | 0.01 | FALSE |
66 | The Cancer Genome Atlas | Lung Adenocarcinoma | KIAA1683 | 0.04 | 0.04 | lasso | 4 | 0.05 | 2.5e-06 | -8.29 | 8.7 | 4.8e-18 | 0.59 | 0.72 | 0.22 | FALSE |
67 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | IL12RB1 | 0.07 | 0.04 | blup | 58 | 0.06 | 4.9e-07 | 4.18 | -6.9 | 5.8e-12 | -0.26 | 0.88 | 0.10 | FALSE |
68 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | KIAA1683 | 0.09 | 0.05 | lasso | 4 | 0.06 | 1.3e-07 | 13.04 | 11.8 | 2.3e-32 | 0.86 | 0.00 | 1.00 | FALSE |
69 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | KIAA1683 | 0.09 | 0.06 | blup | 64 | 0.07 | 2.2e-05 | -7.27 | 8.2 | 3.4e-16 | 0.53 | 0.83 | 0.09 | TRUE |
70 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | HAUS8 | 0.20 | 0.13 | lasso | 2 | 0.11 | 2.4e-05 | 5.00 | -5.2 | 2.1e-07 | -0.01 | 0.31 | 0.41 | FALSE |
71 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | KIAA1683 | 0.08 | -0.01 | blup | 64 | 0.02 | 3.4e-02 | 13.04 | 7.8 | 7.3e-15 | 0.66 | 0.01 | 0.77 | TRUE |
72 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | HAUS8 | 0.21 | 0.11 | enet | 9 | 0.10 | 6.2e-05 | -6.72 | -6.8 | 1.5e-11 | 0.02 | 0.08 | 0.57 | FALSE |
73 | The Cancer Genome Atlas | Prostate Adenocarcinoma | KIAA1683 | 0.06 | 0.02 | blup | 65 | 0.04 | 3.2e-05 | -8.68 | 8.9 | 4.7e-19 | 0.69 | 0.09 | 0.87 | FALSE |
74 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MYO9B | 0.14 | 0.07 | blup | 103 | 0.10 | 5.0e-11 | 7.54 | -5.7 | 9.6e-09 | -0.05 | 0.00 | 1.00 | FALSE |
75 | The Cancer Genome Atlas | Soft Tissue Sarcoma | KIAA1683 | 0.07 | 0.00 | blup | 64 | 0.01 | 4.5e-02 | -8.84 | 10.8 | 2.2e-27 | 0.59 | 0.01 | 0.68 | FALSE |
76 | The Cancer Genome Atlas | Stomach Adenocarcinoma | HAUS8 | 0.06 | 0.04 | blup | 55 | 0.04 | 1.0e-03 | 4.92 | -6.4 | 1.6e-10 | 0.01 | 0.04 | 0.41 | FALSE |
77 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | KIAA1683 | 0.17 | 0.06 | blup | 65 | 0.06 | 3.0e-03 | -6.60 | 9.4 | 3.8e-21 | 0.68 | 0.01 | 0.93 | FALSE |
78 | The Cancer Genome Atlas | Thyroid Carcinoma | HAUS8 | 0.04 | 0.06 | lasso | 2 | 0.05 | 2.2e-05 | 5.00 | -5.5 | 3.8e-08 | -0.01 | 0.10 | 0.87 | FALSE |
79 | The Cancer Genome Atlas | Thyroid Carcinoma | IL12RB1 | 0.08 | 0.04 | lasso | 3 | 0.05 | 8.9e-06 | 3.53 | -5.8 | 5.6e-09 | -0.25 | 0.28 | 0.55 | FALSE |
80 | The Cancer Genome Atlas | Thyroid Carcinoma | KIAA1683 | 0.15 | 0.09 | lasso | 6 | 0.16 | 5.4e-15 | 11.10 | 10.8 | 3.5e-27 | 0.75 | 0.64 | 0.36 | FALSE |