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chr9:3,797,726-6,472,714

Best TWAS P=0 · Best GWAS P=0 conditioned to NaN

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
31	The Cancer Genome Atlas	Thyroid Carcinoma	RCL1	0.06	0.03	blup	130	0.04	1.1e-04	-31.17	-45.1	0.0e+00	-0.37	0.56	0.03	TRUE
15	ROSMAP	Brain Pre-frontal Cortex	RCL1	0.11	0.06	bslmm	641	0.07	9.3e-10	-24.38	-36.7	1.7e-294	-0.17	1.00	0.00	TRUE
3	CommonMind	Brain Pre-frontal Cortex	RCL1	0.10	0.07	bslmm	632	0.05	4.2e-07	22.56	27.1	1.4e-161	0.17	1.00	0.00	TRUE
26	The Cancer Genome Atlas	Brain Lower Grade Glioma	RCL1	0.04	0.02	enet	5	0.03	5.3e-04	16.71	-26.9	9.2e-160	-0.10	0.22	0.02	TRUE
28	The Cancer Genome Atlas	Prostate Adenocarcinoma	AK3	0.12	0.06	lasso	5	0.07	2.3e-07	-27.13	-23.5	2.1e-122	-0.33	0.90	0.00	TRUE
6	GTEx	Nerve Tibial	JAK2	0.17	0.08	enet	26	0.07	1.8e-05	-1.58	-22.9	3.8e-116	-0.26	0.20	0.54	TRUE
8	GTEx	Prostate	RP11-6J24.6	0.42	-0.01	enet	46	0.01	1.9e-01	0.91	-18.9	2.7e-79	-0.13	0.08	0.06	TRUE
17	YFS	Blood	JAK2	0.03	0.03	lasso	4	0.03	1.4e-10	16.60	-18.0	3.0e-72	-0.01	1.00	0.00	TRUE
20	The Cancer Genome Atlas	Breast Invasive Carcinoma	AK3	0.05	0.00	blup	79	0.01	1.0e-03	-26.15	16.0	1.0e-57	0.10	0.01	0.07	TRUE
22	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	AK3	0.06	0.00	enet	14	0.02	2.7e-03	-26.15	-15.4	1.6e-53	-0.32	0.03	0.03	TRUE
13	ROSMAP	Brain Pre-frontal Cortex	SPATA6L	0.08	0.00	bslmm	775	0.02	2.1e-03	14.43	13.0	1.1e-38	0.04	0.66	0.01	TRUE
29	The Cancer Genome Atlas	Prostate Adenocarcinoma	PPAPDC2	0.12	0.01	enet	14	0.04	9.4e-05	-8.74	12.3	5.4e-35	0.11	0.04	0.46	TRUE
1	CommonMind	Brain Pre-frontal Cortex	AK3	0.27	0.06	enet	36	0.10	6.0e-12	-26.94	-12.3	9.3e-35	-0.21	1.00	0.00	TRUE
16	ROSMAP	Brain Pre-frontal Cortex	IGHEP2	0.08	0.07	enet	12	0.08	3.7e-10	-11.86	10.2	1.9e-24	-0.02	1.00	0.00	TRUE
25	The Cancer Genome Atlas	Brain Lower Grade Glioma	PPAPDC2	0.08	0.03	lasso	6	0.04	6.0e-05	5.00	9.8	1.6e-22	0.12	0.05	0.95	TRUE
18	YFS	Blood	PPAPDC2	0.19	0.11	bslmm	676	0.12	7.5e-38	4.96	9.7	2.5e-22	0.13	1.00	0.00	TRUE
12	METSIM	Adipose	SPATA6L	0.10	0.00	blup	788	0.02	7.2e-04	-1.12	9.3	1.0e-20	0.12	0.20	0.06	TRUE
23	The Cancer Genome Atlas	Kidney Renal Papillary Cell Carcinoma	RLN2	0.08	0.06	blup	41	0.06	2.7e-04	4.70	-9.2	2.5e-20	0.02	0.12	0.04	TRUE
7	GTEx	Ovary	PLGRKT	0.45	0.11	enet	30	0.30	5.8e-08	-6.13	-9.1	1.3e-19	0.02	0.20	0.05	TRUE
14	ROSMAP	Brain Pre-frontal Cortex	KIAA1432	0.05	0.00	blup	502	0.02	7.5e-04	-1.67	-7.0	2.4e-12	0.03	0.07	0.42	TRUE
19	The Cancer Genome Atlas	Bladder Urothelial Carcinoma	SLC1A1	0.12	0.03	enet	15	0.05	8.6e-05	2.27	-6.2	6.1e-10	-0.09	0.40	0.16	TRUE
2	CommonMind	Brain Pre-frontal Cortex	JAK2	0.09	0.02	lasso	5	0.03	1.0e-04	17.39	-6.0	1.4e-09	0.03	0.77	0.01	TRUE
4	CommonMind	Brain Pre-frontal Cortex	SLC1A1	0.25	0.09	bslmm	840	0.20	2.5e-24	-2.39	-5.6	2.7e-08	0.02	1.00	0.00	TRUE
24	The Cancer Genome Atlas	Brain Lower Grade Glioma	C9orf68	0.18	0.05	enet	23	0.12	2.0e-13	-1.12	5.5	3.5e-08	0.10	0.00	1.00	TRUE
27	The Cancer Genome Atlas	Brain Lower Grade Glioma	RLN2	0.03	0.02	lasso	2	0.02	5.7e-03	4.70	-5.5	4.9e-08	0.03	0.05	0.03	TRUE
5	GTEx	Esophagus Mucosa	JAK2	0.19	0.01	enet	12	0.02	1.9e-02	-2.71	-13.7	1.5e-42	-0.12	0.09	0.04	FALSE
30	The Cancer Genome Atlas	Prostate Adenocarcinoma	RLN2	0.05	0.01	enet	9	0.01	1.1e-02	-5.84	-10.2	1.3e-24	0.03	0.04	0.10	FALSE
11	METSIM	Adipose	PPAPDC2	0.05	0.01	enet	21	0.01	2.9e-03	14.07	10.1	3.6e-24	0.04	0.77	0.03	FALSE
21	The Cancer Genome Atlas	Breast Invasive Carcinoma	PPAPDC2	0.06	0.01	enet	9	0.03	2.1e-07	-4.96	9.7	3.0e-22	0.03	0.13	0.06	FALSE
9	GTEx	Skin Not Sun Exposed Suprapubic	SPATA6L	0.37	0.34	enet	23	0.34	2.4e-19	4.96	7.5	5.5e-14	0.12	1.00	0.00	FALSE
10	GTEx	Thyroid	SPATA6L	0.37	0.31	enet	26	0.33	5.5e-26	5.00	6.4	1.7e-10	0.11	1.00	0.00	FALSE