Best TWAS P=3.19e-15 · Best GWAS P=3.95e-16 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | PTPRCAP | 0.05 | 0.07 | enet | 12 | 0.07 | 6.0e-09 | 5.6 | -5.5 | 3.6e-08 | -0.19 | 0.49 | 0.51 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | SF3B2 | 0.03 | 0.03 | lasso | 2 | 0.03 | 1.5e-04 | -7.5 | 7.9 | 3.2e-15 | 0.21 | 0.23 | 0.74 | TRUE |
3 | GTEx | Adipose Subcutaneous | CTSF | 0.09 | 0.06 | enet | 7 | 0.08 | 3.6e-07 | -5.3 | -5.3 | 9.1e-08 | -0.30 | 0.99 | 0.00 | FALSE |
4 | GTEx | Adipose Subcutaneous | PTPRCAP | 0.14 | 0.17 | lasso | 5 | 0.20 | 4.3e-16 | 5.6 | -5.5 | 4.0e-08 | -0.20 | 0.62 | 0.38 | FALSE |
5 | GTEx | Adipose Subcutaneous | AP003419.16 | 0.05 | 0.08 | lasso | 1 | 0.07 | 1.7e-06 | 5.6 | -5.6 | 2.6e-08 | -0.19 | 0.56 | 0.36 | FALSE |
6 | GTEx | Adipose Visceral Omentum | RPS6KB2 | 0.08 | 0.03 | lasso | 8 | 0.04 | 2.9e-03 | 5.6 | -5.5 | 3.1e-08 | -0.22 | 0.12 | 0.77 | FALSE |
7 | GTEx | Adipose Visceral Omentum | PTPRCAP | 0.10 | 0.08 | enet | 7 | 0.06 | 4.8e-04 | 4.4 | -5.3 | 8.6e-08 | -0.20 | 0.22 | 0.66 | FALSE |
8 | GTEx | Adipose Visceral Omentum | DPP3 | 0.16 | 0.03 | enet | 17 | 0.05 | 8.3e-04 | 4.9 | -5.5 | 3.0e-08 | -0.69 | 0.12 | 0.72 | FALSE |
9 | GTEx | Adipose Visceral Omentum | AP003419.16 | 0.09 | 0.05 | enet | 8 | 0.04 | 4.6e-03 | 5.6 | -5.6 | 2.3e-08 | -0.21 | 0.12 | 0.69 | FALSE |
10 | GTEx | Artery Aorta | SF3B2 | 0.19 | 0.16 | lasso | 5 | 0.17 | 1.7e-09 | -7.5 | 7.4 | 1.1e-13 | 0.18 | 0.20 | 0.80 | FALSE |
11 | GTEx | Artery Aorta | PTPRCAP | 0.11 | 0.07 | enet | 9 | 0.08 | 3.6e-05 | 5.6 | -5.8 | 5.0e-09 | -0.22 | 0.04 | 0.94 | FALSE |
12 | GTEx | Artery Aorta | AP003419.16 | 0.16 | 0.10 | lasso | 3 | 0.10 | 4.5e-06 | 5.6 | -5.6 | 2.2e-08 | -0.20 | 0.22 | 0.74 | FALSE |
13 | GTEx | Artery Tibial | RPS6KB2 | 0.10 | 0.10 | lasso | 1 | 0.10 | 5.9e-08 | 5.6 | -5.6 | 2.4e-08 | -0.19 | 0.68 | 0.31 | FALSE |
14 | GTEx | Artery Tibial | PTPRCAP | 0.18 | 0.25 | lasso | 7 | 0.24 | 5.9e-19 | 5.6 | -5.6 | 1.8e-08 | -0.19 | 0.71 | 0.29 | FALSE |
15 | GTEx | Artery Tibial | AP003419.16 | 0.11 | 0.13 | lasso | 2 | 0.12 | 2.2e-09 | 5.6 | -5.6 | 2.6e-08 | -0.20 | 0.77 | 0.23 | FALSE |
16 | GTEx | Brain Cerebellar Hemisphere | ZDHHC24 | 0.22 | 0.11 | enet | 15 | 0.16 | 8.2e-05 | 4.9 | -6.4 | 1.6e-10 | -0.81 | 0.03 | 0.85 | FALSE |
17 | GTEx | Brain Cerebellar Hemisphere | PTPRCAP | 0.39 | 0.43 | lasso | 8 | 0.47 | 7.7e-14 | 5.1 | -5.4 | 6.5e-08 | -0.22 | 0.60 | 0.40 | FALSE |
18 | GTEx | Brain Cerebellum | PTPRCAP | 0.39 | 0.48 | lasso | 7 | 0.46 | 3.8e-15 | 5.6 | -5.5 | 3.2e-08 | -0.19 | 0.64 | 0.36 | FALSE |
19 | GTEx | Brain Frontal Cortex BA9 | PTPRCAP | 0.21 | 0.11 | enet | 15 | 0.15 | 9.6e-05 | 5.6 | -5.4 | 7.0e-08 | -0.22 | 0.08 | 0.86 | FALSE |
20 | GTEx | Brain Hypothalamus | PTPRCAP | 0.17 | 0.21 | lasso | 4 | 0.19 | 3.1e-05 | 5.6 | -5.5 | 4.9e-08 | -0.21 | 0.10 | 0.71 | FALSE |
21 | GTEx | Brain Nucleus accumbens basal ganglia | PTPRCAP | 0.35 | 0.36 | lasso | 7 | 0.38 | 2.7e-11 | 5.6 | -5.6 | 1.9e-08 | -0.19 | 0.38 | 0.62 | FALSE |
22 | GTEx | Brain Putamen basal ganglia | PTPRCAP | 0.24 | 0.26 | lasso | 4 | 0.22 | 6.2e-06 | 5.6 | -5.6 | 2.1e-08 | -0.19 | 0.12 | 0.80 | FALSE |
23 | GTEx | Breast Mammary Tissue | CTSF | 0.18 | 0.10 | lasso | 6 | 0.08 | 6.6e-05 | -5.6 | -5.5 | 5.1e-08 | -0.27 | 0.39 | 0.04 | FALSE |
24 | GTEx | Breast Mammary Tissue | B3GNT1 | 0.07 | 0.03 | enet | 9 | 0.05 | 1.6e-03 | -5.3 | 5.5 | 4.6e-08 | 0.31 | 0.23 | 0.05 | FALSE |
25 | GTEx | Breast Mammary Tissue | PTPRCAP | 0.18 | 0.26 | lasso | 3 | 0.24 | 2.0e-12 | 5.6 | -5.5 | 2.9e-08 | -0.19 | 0.66 | 0.34 | FALSE |
26 | GTEx | Breast Mammary Tissue | RP11-867G23.1 | 0.21 | 0.02 | enet | 26 | 0.12 | 9.6e-07 | -1.1 | -6.1 | 1.1e-09 | -0.25 | 0.22 | 0.08 | FALSE |
27 | GTEx | Breast Mammary Tissue | DPP3 | 0.14 | 0.07 | lasso | 2 | 0.05 | 1.5e-03 | 4.4 | -6.6 | 3.3e-11 | -0.93 | 0.01 | 0.99 | FALSE |
28 | GTEx | Breast Mammary Tissue | AP003419.16 | 0.19 | 0.06 | lasso | 5 | 0.05 | 2.3e-03 | 4.2 | -5.3 | 9.7e-08 | -0.25 | 0.16 | 0.19 | FALSE |
29 | GTEx | Breast Mammary Tissue (Male) | NDUFV1 | 0.11 | 0.05 | enet | 8 | 0.03 | 5.6e-02 | -4.0 | 5.2 | 1.5e-07 | 0.22 | 0.05 | 0.27 | FALSE |
30 | GTEx | Breast Mammary Tissue (Male) | RP11-755F10.1 | 0.11 | 0.02 | enet | 18 | 0.03 | 7.0e-02 | -1.1 | 5.2 | 1.5e-07 | 0.47 | 0.03 | 0.19 | TRUE |
31 | GTEx | Breast Mammary Tissue (Female) | B3GNT1 | 0.03 | 0.00 | enet | 4 | 0.00 | 4.2e-01 | 2.8 | 5.6 | 1.7e-08 | 0.04 | 0.03 | 0.05 | TRUE |
32 | GTEx | Cells Transformed fibroblasts | RPS6KB2 | 0.19 | 0.28 | lasso | 3 | 0.27 | 1.7e-20 | 5.6 | -5.5 | 4.9e-08 | -0.19 | 0.76 | 0.24 | FALSE |
33 | GTEx | Cells Transformed fibroblasts | AP003419.16 | 0.21 | 0.22 | lasso | 6 | 0.21 | 1.6e-15 | 5.6 | -5.4 | 7.2e-08 | -0.21 | 0.76 | 0.24 | FALSE |
34 | GTEx | Colon Transverse | PTPRCAP | 0.14 | 0.06 | lasso | 7 | 0.07 | 3.8e-04 | 5.6 | -5.5 | 2.8e-08 | -0.18 | 0.22 | 0.70 | FALSE |
35 | GTEx | Colon Transverse | AP003419.16 | 0.14 | 0.06 | enet | 15 | 0.06 | 7.2e-04 | 5.6 | -5.5 | 4.4e-08 | -0.12 | 0.13 | 0.67 | FALSE |
36 | GTEx | Esophagus Gastroesophageal Junction | AP003419.16 | 0.25 | 0.18 | lasso | 16 | 0.18 | 6.7e-07 | 5.6 | -6.0 | 2.3e-09 | -0.20 | 0.12 | 0.86 | FALSE |
37 | GTEx | Esophagus Mucosa | RPS6KB2 | 0.12 | 0.09 | lasso | 3 | 0.11 | 1.1e-07 | 5.6 | -5.2 | 1.7e-07 | -0.21 | 0.64 | 0.34 | FALSE |
38 | GTEx | Esophagus Mucosa | AP003419.16 | 0.18 | 0.15 | lasso | 3 | 0.18 | 7.8e-12 | 5.6 | -5.5 | 4.8e-08 | -0.21 | 0.72 | 0.28 | FALSE |
39 | GTEx | Esophagus Muscularis | SF3B2 | 0.17 | 0.10 | lasso | 7 | 0.11 | 4.3e-07 | -7.5 | 7.5 | 8.7e-14 | 0.18 | 0.24 | 0.75 | FALSE |
40 | GTEx | Esophagus Muscularis | EIF1AD | 0.26 | 0.03 | enet | 50 | 0.10 | 6.6e-07 | -2.6 | -5.3 | 1.2e-07 | -0.19 | 0.14 | 0.62 | FALSE |
41 | GTEx | Esophagus Muscularis | RPS6KB2 | 0.28 | 0.20 | lasso | 3 | 0.18 | 3.0e-11 | 5.6 | -6.0 | 1.5e-09 | -0.21 | 0.70 | 0.30 | FALSE |
42 | GTEx | Esophagus Muscularis | PTPRCAP | 0.21 | 0.26 | lasso | 4 | 0.26 | 9.2e-16 | 5.6 | -5.6 | 2.1e-08 | -0.19 | 0.66 | 0.34 | FALSE |
43 | GTEx | Esophagus Muscularis | AP003419.16 | 0.19 | 0.17 | lasso | 3 | 0.18 | 7.3e-11 | 5.6 | -5.6 | 2.2e-08 | -0.19 | 0.72 | 0.28 | FALSE |
44 | GTEx | Heart Atrial Appendage | RPS6KB2 | 0.16 | 0.09 | lasso | 9 | 0.07 | 3.5e-04 | 5.6 | -5.2 | 1.5e-07 | -0.21 | 0.33 | 0.41 | FALSE |
45 | GTEx | Heart Atrial Appendage | AP003419.16 | 0.11 | 0.10 | lasso | 5 | 0.12 | 4.4e-06 | 5.6 | -5.7 | 1.4e-08 | -0.22 | 0.40 | 0.51 | FALSE |
46 | GTEx | Heart Left Ventricle | RPS6KB2 | 0.14 | 0.14 | lasso | 4 | 0.15 | 2.6e-08 | 5.6 | -5.6 | 2.2e-08 | -0.19 | 0.12 | 0.88 | FALSE |
47 | GTEx | Heart Left Ventricle | PTPRCAP | 0.15 | 0.22 | enet | 10 | 0.22 | 5.2e-12 | 5.6 | -6.0 | 1.6e-09 | -0.22 | 0.06 | 0.94 | FALSE |
48 | GTEx | Heart Left Ventricle | AP003419.16 | 0.19 | 0.16 | lasso | 5 | 0.16 | 6.8e-09 | 5.6 | -5.7 | 1.6e-08 | -0.20 | 0.32 | 0.68 | FALSE |
49 | GTEx | Lung | SF3B2 | 0.19 | 0.18 | lasso | 1 | 0.18 | 2.1e-13 | -7.5 | 7.5 | 9.0e-14 | 0.18 | 0.20 | 0.80 | FALSE |
50 | GTEx | Lung | SPTBN2 | 0.07 | 0.00 | lasso | 4 | 0.01 | 4.3e-02 | -5.6 | 6.7 | 2.4e-11 | 0.28 | 0.19 | 0.15 | FALSE |
51 | GTEx | Lung | CTSF | 0.11 | 0.10 | enet | 7 | 0.10 | 6.9e-08 | -4.9 | -5.9 | 3.9e-09 | -0.18 | 0.93 | 0.00 | TRUE |
52 | GTEx | Lung | B3GNT1 | 0.17 | 0.00 | lasso | 9 | 0.00 | 2.3e-01 | 8.0 | 5.7 | 9.9e-09 | 0.67 | 0.02 | 0.52 | FALSE |
53 | GTEx | Muscle Skeletal | SF3B2 | 0.14 | 0.09 | lasso | 6 | 0.09 | 9.5e-09 | -7.5 | 7.3 | 2.0e-13 | 0.20 | 0.20 | 0.80 | FALSE |
54 | GTEx | Muscle Skeletal | RPS6KB2 | 0.17 | 0.20 | lasso | 3 | 0.20 | 8.3e-19 | 5.6 | -5.6 | 2.3e-08 | -0.19 | 0.75 | 0.25 | FALSE |
55 | GTEx | Muscle Skeletal | PTPRCAP | 0.09 | 0.08 | lasso | 6 | 0.09 | 2.6e-09 | 5.6 | -5.4 | 8.4e-08 | -0.19 | 0.27 | 0.73 | FALSE |
56 | GTEx | Muscle Skeletal | AP003419.16 | 0.19 | 0.21 | lasso | 2 | 0.20 | 1.4e-19 | 5.6 | -5.6 | 2.5e-08 | -0.19 | 0.76 | 0.24 | FALSE |
57 | GTEx | Nerve Tibial | SF3B2 | 0.13 | 0.12 | lasso | 3 | 0.10 | 2.3e-07 | -7.5 | 7.8 | 7.8e-15 | 0.20 | 0.20 | 0.79 | FALSE |
58 | GTEx | Nerve Tibial | B3GNT1 | 0.07 | 0.10 | lasso | 2 | 0.09 | 7.1e-07 | -6.5 | 6.9 | 6.6e-12 | 0.28 | 0.90 | 0.03 | FALSE |
59 | GTEx | Nerve Tibial | PACS1 | 0.15 | 0.08 | enet | 12 | 0.13 | 2.3e-09 | 7.1 | 5.2 | 2.1e-07 | 0.16 | 0.90 | 0.09 | FALSE |
60 | GTEx | Nerve Tibial | PTPRCAP | 0.33 | 0.38 | enet | 14 | 0.47 | 2.1e-37 | 5.6 | -5.5 | 3.1e-08 | -0.20 | 0.71 | 0.29 | FALSE |
61 | GTEx | Nerve Tibial | DPP3 | 0.19 | 0.11 | enet | 12 | 0.12 | 9.5e-09 | 4.4 | -6.2 | 5.0e-10 | -0.79 | 0.77 | 0.21 | FALSE |
62 | GTEx | Nerve Tibial | AP003419.16 | 0.08 | 0.04 | lasso | 9 | 0.04 | 4.0e-04 | 4.6 | -5.9 | 3.3e-09 | -0.20 | 0.04 | 0.90 | FALSE |
63 | GTEx | Ovary | PTPRCAP | 0.35 | 0.28 | enet | 13 | 0.26 | 5.3e-07 | 5.6 | -5.6 | 2.3e-08 | -0.20 | 0.36 | 0.55 | FALSE |
64 | GTEx | Pancreas | DPP3 | 0.19 | 0.13 | lasso | 8 | 0.14 | 1.4e-06 | 4.4 | -5.8 | 9.2e-09 | -0.77 | 0.74 | 0.23 | FALSE |
65 | GTEx | Pancreas | AP003419.16 | 0.11 | 0.05 | enet | 14 | 0.07 | 8.4e-04 | 5.6 | -5.2 | 1.7e-07 | -0.25 | 0.34 | 0.38 | FALSE |
66 | GTEx | Pituitary | PTPRCAP | 0.24 | 0.33 | lasso | 6 | 0.26 | 4.0e-07 | 5.6 | -5.5 | 4.1e-08 | -0.20 | 0.21 | 0.77 | FALSE |
67 | GTEx | Prostate | PTPRCAP | 0.28 | 0.22 | enet | 10 | 0.22 | 3.8e-06 | 5.6 | -5.5 | 3.4e-08 | -0.19 | 0.12 | 0.76 | FALSE |
68 | GTEx | Skin Not Sun Exposed Suprapubic | CTSF | 0.09 | 0.02 | lasso | 3 | 0.04 | 2.2e-03 | -5.3 | -6.6 | 3.0e-11 | -0.34 | 0.25 | 0.31 | FALSE |
69 | GTEx | Skin Not Sun Exposed Suprapubic | PTPRCAP | 0.22 | 0.14 | enet | 19 | 0.15 | 1.8e-08 | 5.6 | -5.6 | 1.8e-08 | -0.19 | 0.66 | 0.34 | FALSE |
70 | GTEx | Skin Sun Exposed Lower leg | RPS6KB2 | 0.11 | 0.10 | lasso | 4 | 0.09 | 4.0e-08 | 5.1 | -6.1 | 1.4e-09 | -0.26 | 0.04 | 0.96 | FALSE |
71 | GTEx | Skin Sun Exposed Lower leg | PTPRCAP | 0.24 | 0.19 | lasso | 8 | 0.22 | 4.8e-18 | 5.6 | -6.2 | 4.8e-10 | -0.23 | 0.18 | 0.82 | FALSE |
72 | GTEx | Skin Sun Exposed Lower leg | AP003419.16 | 0.14 | 0.14 | lasso | 6 | 0.13 | 9.4e-11 | 5.6 | -5.6 | 2.2e-08 | -0.20 | 0.51 | 0.49 | FALSE |
73 | GTEx | Spleen | CTD-3074O7.5 | 0.29 | 0.03 | enet | 27 | 0.05 | 2.6e-02 | 4.9 | -7.2 | 5.4e-13 | -0.46 | 0.04 | 0.20 | FALSE |
74 | GTEx | Stomach | IGHMBP2 | 0.15 | 0.06 | enet | 14 | 0.03 | 9.1e-03 | 4.8 | 5.2 | 2.3e-07 | 0.00 | 0.02 | 0.95 | FALSE |
75 | GTEx | Stomach | AP003419.16 | 0.12 | 0.11 | lasso | 4 | 0.08 | 1.4e-04 | 5.6 | -5.6 | 2.0e-08 | -0.20 | 0.31 | 0.27 | FALSE |
76 | GTEx | Testis | AIP | 0.11 | 0.14 | lasso | 2 | 0.11 | 1.5e-05 | 5.6 | -5.2 | 2.6e-07 | -0.20 | 0.05 | 0.94 | TRUE |
77 | GTEx | Testis | RPS6KB2 | 0.20 | 0.16 | lasso | 11 | 0.16 | 8.3e-08 | 5.6 | -5.5 | 4.9e-08 | -0.21 | 0.70 | 0.30 | FALSE |
78 | GTEx | Testis | PTPRCAP | 0.19 | 0.24 | enet | 13 | 0.24 | 7.9e-11 | 5.6 | -5.4 | 5.5e-08 | -0.18 | 0.16 | 0.84 | FALSE |
79 | GTEx | Testis | DPP3 | 0.10 | 0.06 | lasso | 4 | 0.07 | 5.3e-04 | -6.6 | -5.9 | 4.1e-09 | -0.10 | 0.17 | 0.04 | TRUE |
80 | GTEx | Testis | AP003419.16 | 0.22 | 0.18 | lasso | 8 | 0.18 | 1.3e-08 | 5.6 | -5.4 | 5.2e-08 | -0.19 | 0.79 | 0.21 | FALSE |
81 | GTEx | Thyroid | SF3B2 | 0.18 | 0.15 | lasso | 2 | 0.14 | 5.8e-11 | -7.5 | 7.5 | 8.1e-14 | 0.18 | 0.19 | 0.81 | FALSE |
82 | GTEx | Thyroid | BRMS1 | 0.05 | 0.02 | lasso | 4 | 0.01 | 2.6e-02 | -5.3 | 6.2 | 4.6e-10 | 0.28 | 0.11 | 0.18 | FALSE |
83 | GTEx | Thyroid | PTPRCAP | 0.17 | 0.19 | lasso | 4 | 0.21 | 1.1e-15 | 5.6 | -5.6 | 2.1e-08 | -0.19 | 0.71 | 0.29 | FALSE |
84 | GTEx | Thyroid | AP003419.16 | 0.09 | 0.06 | lasso | 4 | 0.05 | 1.8e-04 | 5.6 | -5.4 | 8.1e-08 | -0.18 | 0.16 | 0.78 | FALSE |
85 | GTEx | Uterus | PTPRCAP | 0.28 | 0.15 | lasso | 5 | 0.15 | 5.5e-04 | 4.2 | -5.2 | 2.6e-07 | -0.23 | 0.09 | 0.41 | FALSE |
86 | GTEx | Vagina | PTPRCAP | 0.33 | 0.05 | enet | 8 | 0.06 | 2.0e-02 | 5.6 | -5.4 | 6.4e-08 | -0.21 | 0.08 | 0.16 | FALSE |
87 | GTEx | Whole Blood | SF3B2 | 0.09 | 0.07 | lasso | 11 | 0.05 | 1.7e-05 | -7.5 | 7.7 | 1.7e-14 | 0.23 | 0.22 | 0.77 | TRUE |
88 | METSIM | Adipose | GSTP1 | 0.05 | 0.05 | lasso | 6 | 0.04 | 9.3e-07 | 5.0 | -5.3 | 1.4e-07 | -0.25 | 0.98 | 0.01 | TRUE |
89 | METSIM | Adipose | RNASEH2C | 0.07 | 0.03 | blup | 325 | 0.04 | 3.4e-07 | 1.4 | -5.4 | 5.9e-08 | -0.03 | 0.86 | 0.01 | FALSE |
90 | NTR | Blood | MRPL21 | 0.06 | 0.07 | enet | 19 | 0.07 | 7.0e-23 | 4.6 | -5.2 | 1.5e-07 | 0.00 | 0.02 | 0.96 | TRUE |
91 | ROSMAP | Brain Pre-frontal Cortex | SF3B2 | 0.46 | 0.44 | lasso | 3 | 0.44 | 7.1e-62 | -7.2 | 7.2 | 4.5e-13 | 0.18 | 0.49 | 0.51 | FALSE |
92 | ROSMAP | Brain Pre-frontal Cortex | CTSF | 0.07 | 0.08 | blup | 244 | 0.07 | 1.6e-09 | 4.8 | 5.4 | 6.0e-08 | 0.76 | 0.87 | 0.13 | FALSE |
93 | ROSMAP | Brain Pre-frontal Cortex | B3GNT1 | 0.04 | 0.02 | lasso | 2 | 0.02 | 1.3e-03 | -6.5 | 6.3 | 2.4e-10 | 0.25 | 0.25 | 0.08 | FALSE |
94 | ROSMAP | Brain Pre-frontal Cortex | RIN1 | 0.03 | 0.03 | enet | 5 | 0.03 | 1.8e-04 | -6.7 | -6.7 | 2.0e-11 | -0.24 | 0.51 | 0.02 | TRUE |
95 | ROSMAP | Brain Pre-frontal Cortex | RPS6KB2 | 0.24 | 0.37 | lasso | 5 | 0.37 | 7.2e-50 | 5.6 | -5.6 | 2.2e-08 | -0.19 | 0.73 | 0.27 | FALSE |
96 | ROSMAP | Brain Pre-frontal Cortex | PTPRCAP | 0.31 | 0.47 | enet | 14 | 0.47 | 2.7e-68 | 5.6 | -5.5 | 2.9e-08 | -0.20 | 0.74 | 0.26 | FALSE |
97 | YFS | Blood | CATSPER1 | 0.02 | 0.01 | blup | 352 | 0.01 | 5.5e-04 | -7.3 | 7.0 | 2.0e-12 | 0.47 | 0.01 | 0.98 | FALSE |
98 | YFS | Blood | CORO1B | 0.10 | 0.11 | bslmm | 223 | 0.11 | 6.3e-34 | 5.6 | -5.7 | 1.0e-08 | -0.18 | 0.74 | 0.26 | FALSE |
99 | YFS | Blood | LRFN4 | 0.06 | 0.05 | lasso | 5 | 0.05 | 7.3e-17 | -6.3 | 5.6 | 1.7e-08 | 0.12 | 1.00 | 0.00 | FALSE |
100 | YFS | Blood | PELI3 | 0.01 | 0.01 | lasso | 5 | 0.01 | 5.4e-04 | 5.3 | -5.4 | 8.3e-08 | -0.80 | 0.34 | 0.58 | FALSE |
101 | YFS | Blood | RPS6KB2 | 0.04 | 0.05 | lasso | 7 | 0.05 | 6.7e-17 | 5.6 | -5.5 | 2.9e-08 | -0.19 | 0.73 | 0.27 | FALSE |
102 | YFS | Blood | SF3B2 | 0.05 | 0.04 | bslmm | 369 | 0.04 | 2.9e-12 | -7.5 | 7.3 | 3.2e-13 | 0.14 | 0.32 | 0.68 | FALSE |
103 | YFS | Blood | SLC29A2 | 0.03 | 0.02 | lasso | 8 | 0.02 | 6.8e-07 | -5.8 | -5.5 | 4.3e-08 | -0.18 | 1.00 | 0.00 | TRUE |
104 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | DPP3 | 0.03 | 0.03 | blup | 41 | 0.02 | 9.5e-03 | 4.8 | -5.3 | 1.1e-07 | -0.78 | 0.08 | 0.44 | FALSE |
105 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | RPS6KB2 | 0.07 | 0.06 | enet | 13 | 0.08 | 3.8e-07 | 5.6 | -5.9 | 3.2e-09 | -0.25 | 0.03 | 0.97 | FALSE |
106 | The Cancer Genome Atlas | Breast Invasive Carcinoma | RPS6KB2 | 0.05 | 0.06 | lasso | 3 | 0.06 | 1.1e-12 | 5.1 | -5.1 | 2.8e-07 | -0.23 | 0.93 | 0.07 | FALSE |
107 | The Cancer Genome Atlas | Colon Adenocarcinoma | RPS6KB2 | 0.11 | 0.12 | lasso | 6 | 0.10 | 1.2e-06 | 5.6 | -5.6 | 1.8e-08 | -0.19 | 0.57 | 0.42 | FALSE |
108 | The Cancer Genome Atlas | Glioblastoma Multiforme | RPS6KB2 | 0.13 | 0.08 | blup | 36 | 0.09 | 1.2e-03 | 6.8 | -5.6 | 2.5e-08 | -0.10 | 0.01 | 0.66 | FALSE |
109 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | B3GNT1 | 0.02 | 0.02 | blup | 30 | 0.02 | 7.5e-04 | -5.8 | 5.6 | 2.3e-08 | 0.25 | 0.09 | 0.68 | FALSE |
110 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | RPS6KB2 | 0.03 | 0.03 | lasso | 4 | 0.02 | 8.9e-04 | 6.8 | -6.8 | 1.1e-11 | -0.26 | 0.00 | 0.99 | FALSE |
111 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | B3GNT1 | 0.02 | 0.03 | lasso | 3 | 0.02 | 1.1e-03 | -5.8 | 5.8 | 6.5e-09 | 0.17 | 0.06 | 0.38 | FALSE |
112 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CCDC87 | 0.03 | 0.02 | blup | 34 | 0.02 | 2.0e-03 | 8.1 | 7.8 | 8.0e-15 | 0.90 | 0.00 | 0.94 | TRUE |
113 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | RPS6KB2 | 0.09 | 0.16 | enet | 9 | 0.15 | 2.1e-16 | 5.6 | -5.6 | 1.9e-08 | -0.20 | 0.66 | 0.34 | FALSE |
114 | The Cancer Genome Atlas | Brain Lower Grade Glioma | C11orf80 | 0.05 | 0.04 | lasso | 3 | 0.03 | 4.6e-04 | -5.3 | 5.2 | 1.6e-07 | 0.24 | 0.64 | 0.26 | TRUE |
115 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CTSF | 0.05 | 0.04 | blup | 35 | 0.04 | 1.2e-05 | 4.9 | 5.2 | 2.1e-07 | 0.82 | 0.02 | 0.97 | FALSE |
116 | The Cancer Genome Atlas | Brain Lower Grade Glioma | LRFN4 | 0.03 | 0.04 | lasso | 4 | 0.03 | 1.5e-04 | -6.3 | 6.2 | 6.1e-10 | 0.22 | 0.03 | 0.86 | FALSE |
117 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PTPRCAP | 0.12 | 0.22 | blup | 37 | 0.22 | 2.3e-24 | 5.6 | -5.2 | 2.0e-07 | -0.15 | 0.66 | 0.34 | FALSE |
118 | The Cancer Genome Atlas | Lung Adenocarcinoma | BANF1 | 0.03 | 0.00 | blup | 44 | 0.02 | 3.9e-03 | -3.1 | 6.1 | 1.0e-09 | 0.18 | 0.03 | 0.29 | TRUE |
119 | The Cancer Genome Atlas | Lung Adenocarcinoma | RPS6KB2 | 0.05 | 0.07 | lasso | 4 | 0.06 | 6.2e-08 | 5.1 | -5.2 | 2.4e-07 | -0.23 | 0.25 | 0.75 | FALSE |
120 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | C11orf80 | 0.03 | 0.01 | blup | 30 | 0.01 | 4.8e-02 | -5.6 | 7.2 | 7.1e-13 | 0.38 | 0.02 | 0.45 | FALSE |
121 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | EIF1AD | 0.03 | 0.00 | blup | 42 | 0.01 | 2.5e-02 | -7.3 | -6.2 | 4.2e-10 | -0.16 | 0.00 | 0.72 | FALSE |
122 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | RPS6KB2 | 0.05 | 0.05 | lasso | 6 | 0.04 | 1.2e-05 | 5.6 | -5.5 | 5.1e-08 | -0.20 | 0.26 | 0.73 | FALSE |
123 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | RPS6KB2 | 0.12 | 0.02 | lasso | 8 | 0.02 | 6.9e-02 | 3.2 | -5.4 | 8.3e-08 | -0.22 | 0.01 | 0.63 | FALSE |
124 | The Cancer Genome Atlas | Prostate Adenocarcinoma | LRFN4 | 0.02 | 0.02 | blup | 25 | 0.01 | 3.6e-02 | -6.3 | 6.0 | 1.6e-09 | 0.21 | 0.01 | 0.82 | FALSE |
125 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PACS1 | 0.29 | 0.14 | lasso | 4 | 0.14 | 1.1e-14 | -6.0 | -5.2 | 2.5e-07 | -0.09 | 0.99 | 0.01 | FALSE |
126 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PTPRCAP | 0.08 | 0.10 | lasso | 2 | 0.10 | 7.8e-11 | 5.6 | -5.6 | 1.9e-08 | -0.19 | 0.69 | 0.31 | FALSE |
127 | The Cancer Genome Atlas | Prostate Adenocarcinoma | RPS6KB2 | 0.09 | 0.13 | lasso | 6 | 0.13 | 7.1e-14 | 5.6 | -5.9 | 3.9e-09 | -0.18 | 0.68 | 0.32 | FALSE |
128 | The Cancer Genome Atlas | Rectum Adenocarcinoma | RPS6KB2 | 0.17 | 0.13 | lasso | 2 | 0.12 | 1.2e-03 | 6.8 | -6.9 | 7.0e-12 | -0.27 | 0.00 | 0.92 | FALSE |
129 | The Cancer Genome Atlas | Soft Tissue Sarcoma | RPS6KB2 | 0.05 | 0.04 | lasso | 2 | 0.04 | 2.1e-03 | 5.6 | -5.6 | 2.6e-08 | -0.19 | 0.03 | 0.88 | FALSE |
130 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | EIF1AD | 0.14 | 0.05 | blup | 42 | 0.08 | 3.9e-03 | -7.0 | -6.9 | 5.4e-12 | -0.20 | 0.01 | 0.54 | TRUE |
131 | The Cancer Genome Atlas | Stomach Adenocarcinoma | LRFN4 | 0.04 | 0.02 | blup | 24 | 0.03 | 2.2e-03 | -6.3 | 6.2 | 7.1e-10 | 0.18 | 0.01 | 0.78 | FALSE |
132 | The Cancer Genome Atlas | Stomach Adenocarcinoma | RPS6KB2 | 0.10 | 0.11 | lasso | 4 | 0.10 | 8.6e-08 | 5.6 | -5.6 | 1.9e-08 | -0.19 | 0.60 | 0.40 | FALSE |
133 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | RPS6KB2 | 0.12 | 0.06 | blup | 35 | 0.05 | 5.4e-03 | 5.1 | -5.6 | 2.0e-08 | -0.26 | 0.02 | 0.71 | FALSE |
134 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | TBC1D10C | 0.12 | 0.05 | lasso | 5 | 0.03 | 3.0e-02 | 5.6 | -5.6 | 1.9e-08 | -0.20 | 0.05 | 0.21 | FALSE |
135 | The Cancer Genome Atlas | Thyroid Carcinoma | LRFN4 | 0.03 | 0.04 | lasso | 2 | 0.04 | 2.2e-04 | -6.3 | 6.3 | 2.8e-10 | 0.24 | 0.02 | 0.80 | FALSE |
136 | The Cancer Genome Atlas | Thyroid Carcinoma | PELI3 | 0.04 | 0.04 | enet | 4 | 0.03 | 9.0e-04 | 4.8 | -5.6 | 1.9e-08 | -0.76 | 0.13 | 0.03 | FALSE |
137 | The Cancer Genome Atlas | Thyroid Carcinoma | PTPRCAP | 0.04 | 0.02 | blup | 36 | 0.02 | 3.9e-03 | 6.8 | -5.7 | 1.5e-08 | -0.16 | 0.00 | 0.96 | FALSE |
138 | The Cancer Genome Atlas | Thyroid Carcinoma | RPS6KB2 | 0.12 | 0.15 | lasso | 6 | 0.15 | 2.1e-14 | 5.6 | -5.8 | 7.3e-09 | -0.21 | 0.37 | 0.63 | FALSE |