Best TWAS P=3.08e-31 · Best GWAS P=1.64e-26 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | E2F1 | 0.06 | 0.01 | bslmm | 268 | 0.02 | 1.6e-03 | 8.967 | -7.2 | 6.2e-13 | -0.01 | 0.04 | 0.78 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | EDEM2 | 0.09 | 0.09 | enet | 12 | 0.09 | 5.8e-11 | 10.065 | -7.7 | 1.1e-14 | -0.76 | 0.28 | 0.72 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | GSS | 0.06 | 0.04 | enet | 18 | 0.04 | 3.4e-06 | -8.534 | 9.4 | 5.5e-21 | 0.43 | 0.99 | 0.01 | FALSE |
4 | CommonMind | Brain Pre-frontal Cortex | MAP1LC3A | 0.22 | 0.14 | blup | 309 | 0.19 | 3.9e-22 | -8.725 | 8.9 | 6.5e-19 | 0.28 | 1.00 | 0.00 | FALSE |
5 | GTEx | Adipose Subcutaneous | EDEM2 | 0.10 | 0.07 | lasso | 9 | 0.07 | 2.1e-06 | 9.804 | -7.6 | 3.4e-14 | -0.75 | 0.61 | 0.38 | FALSE |
6 | GTEx | Adipose Subcutaneous | TRPC4AP | 0.06 | 0.01 | lasso | 6 | 0.01 | 3.8e-02 | -8.307 | -11.0 | 3.4e-28 | -0.80 | 0.02 | 0.90 | FALSE |
7 | GTEx | Adipose Subcutaneous | PROCR | 0.13 | 0.05 | enet | 4 | 0.05 | 8.2e-05 | 9.804 | -9.3 | 1.3e-20 | -0.81 | 0.09 | 0.90 | TRUE |
8 | GTEx | Adipose Subcutaneous | PXMP4 | 0.08 | 0.03 | lasso | 4 | 0.02 | 6.8e-03 | 8.967 | -7.2 | 4.3e-13 | 0.06 | 0.07 | 0.36 | FALSE |
9 | GTEx | Adipose Subcutaneous | MAP1LC3A | 0.17 | 0.18 | enet | 22 | 0.19 | 2.1e-15 | 8.664 | 9.9 | 3.4e-23 | 0.51 | 1.00 | 0.00 | FALSE |
10 | GTEx | Adipose Subcutaneous | NCOA6 | 0.10 | 0.06 | enet | 29 | 0.07 | 1.3e-06 | -8.284 | 6.7 | 1.6e-11 | 0.21 | 0.97 | 0.02 | FALSE |
11 | GTEx | Adipose Subcutaneous | RP4-614O4.12 | 0.08 | 0.03 | enet | 20 | 0.03 | 1.1e-03 | -8.300 | -8.1 | 4.4e-16 | -0.47 | 0.76 | 0.16 | TRUE |
12 | GTEx | Adipose Visceral Omentum | MAP1LC3A | 0.17 | 0.11 | enet | 62 | 0.10 | 4.7e-06 | 8.574 | 6.4 | 1.3e-10 | 0.19 | 1.00 | 0.00 | FALSE |
13 | GTEx | Artery Aorta | CBFA2T2 | 0.23 | 0.11 | enet | 13 | 0.18 | 4.5e-10 | 2.377 | -5.6 | 2.3e-08 | 0.00 | 0.46 | 0.53 | FALSE |
14 | GTEx | Artery Aorta | MYH7B | 0.22 | 0.08 | lasso | 6 | 0.09 | 1.3e-05 | 10.521 | 8.2 | 2.1e-16 | 0.93 | 0.01 | 0.99 | FALSE |
15 | GTEx | Artery Aorta | EDEM2 | 0.13 | 0.08 | enet | 10 | 0.07 | 6.3e-05 | 9.786 | -9.4 | 4.2e-21 | -0.93 | 0.02 | 0.98 | FALSE |
16 | GTEx | Artery Aorta | MAP1LC3A | 0.19 | 0.22 | enet | 36 | 0.23 | 4.3e-13 | 8.692 | 8.5 | 1.9e-17 | 0.34 | 1.00 | 0.00 | FALSE |
17 | GTEx | Artery Aorta | GGT7 | 0.06 | 0.00 | enet | 7 | 0.02 | 1.9e-02 | -0.733 | 7.1 | 1.6e-12 | 0.68 | 0.12 | 0.47 | FALSE |
18 | GTEx | Artery Aorta | NCOA6 | 0.09 | 0.12 | lasso | 11 | 0.09 | 9.7e-06 | -9.806 | 8.4 | 5.2e-17 | 0.27 | 0.83 | 0.14 | FALSE |
19 | GTEx | Artery Coronary | MAP1LC3A | 0.26 | 0.21 | lasso | 7 | 0.24 | 8.3e-09 | -8.549 | 7.7 | 1.0e-14 | 0.35 | 0.96 | 0.01 | FALSE |
20 | GTEx | Artery Coronary | NCOA6 | 0.20 | 0.15 | enet | 27 | 0.24 | 1.1e-08 | -9.806 | 5.8 | 7.9e-09 | 0.13 | 0.95 | 0.02 | FALSE |
21 | GTEx | Artery Tibial | MYH7B | 0.14 | 0.10 | lasso | 10 | 0.12 | 2.9e-09 | 10.561 | 9.4 | 3.3e-21 | 0.91 | 0.01 | 0.99 | FALSE |
22 | GTEx | Artery Tibial | EDEM2 | 0.14 | 0.10 | lasso | 6 | 0.08 | 1.1e-06 | 9.804 | -9.8 | 1.4e-22 | -0.85 | 0.03 | 0.97 | FALSE |
23 | GTEx | Artery Tibial | MAP1LC3A | 0.13 | 0.15 | enet | 23 | 0.21 | 2.2e-16 | 8.737 | 8.8 | 2.0e-18 | 0.36 | 1.00 | 0.00 | FALSE |
24 | GTEx | Artery Tibial | PIGU | 0.05 | 0.05 | lasso | 3 | 0.04 | 2.2e-04 | -8.725 | 8.9 | 3.5e-19 | 0.32 | 0.81 | 0.01 | FALSE |
25 | GTEx | Artery Tibial | NCOA6 | 0.12 | 0.14 | lasso | 9 | 0.18 | 1.0e-13 | -9.806 | 8.3 | 1.2e-16 | 0.24 | 0.98 | 0.02 | FALSE |
26 | GTEx | Brain Caudate basal ganglia | GSS | 0.20 | 0.16 | lasso | 8 | 0.11 | 4.3e-04 | 10.517 | 11.6 | 3.1e-31 | 0.97 | 0.02 | 0.83 | TRUE |
27 | GTEx | Brain Caudate basal ganglia | MAP1LC3A | 0.12 | 0.04 | enet | 13 | 0.09 | 1.2e-03 | -8.511 | 11.4 | 2.7e-30 | 0.74 | 0.08 | 0.72 | FALSE |
28 | GTEx | Brain Caudate basal ganglia | ACSS2 | 0.20 | 0.04 | lasso | 11 | 0.04 | 2.4e-02 | -9.798 | 10.6 | 2.7e-26 | 0.54 | 0.15 | 0.49 | FALSE |
29 | GTEx | Brain Caudate basal ganglia | NCOA6 | 0.14 | 0.04 | enet | 22 | 0.09 | 1.7e-03 | -9.798 | 7.9 | 3.8e-15 | 0.41 | 0.25 | 0.29 | FALSE |
30 | GTEx | Brain Caudate basal ganglia | EIF6 | 0.32 | 0.02 | lasso | 16 | 0.08 | 2.5e-03 | 10.517 | 6.1 | 1.2e-09 | 0.61 | 0.03 | 0.51 | FALSE |
31 | GTEx | Brain Caudate basal ganglia | RP4-614O4.11 | 0.33 | 0.06 | enet | 23 | 0.14 | 8.5e-05 | -2.768 | 5.7 | 1.4e-08 | 0.61 | 0.03 | 0.59 | FALSE |
32 | GTEx | Brain Cerebellar Hemisphere | MYH7B | 0.18 | 0.10 | lasso | 5 | 0.08 | 3.7e-03 | 10.532 | 10.7 | 8.4e-27 | 0.98 | 0.02 | 0.96 | FALSE |
33 | GTEx | Brain Cerebellar Hemisphere | GSS | 0.16 | 0.04 | lasso | 2 | 0.04 | 4.2e-02 | 10.245 | 10.1 | 4.3e-24 | 0.64 | 0.10 | 0.22 | FALSE |
34 | GTEx | Brain Cerebellar Hemisphere | MAP1LC3A | 0.28 | 0.22 | lasso | 13 | 0.29 | 4.0e-08 | -8.245 | 10.2 | 1.4e-24 | 0.57 | 0.69 | 0.30 | FALSE |
35 | GTEx | Brain Cerebellar Hemisphere | ACSS2 | 0.22 | 0.17 | enet | 25 | 0.17 | 3.1e-05 | -8.284 | 7.6 | 2.6e-14 | 0.35 | 0.58 | 0.18 | FALSE |
36 | GTEx | Brain Cerebellum | MYH7B | 0.26 | 0.30 | lasso | 4 | 0.26 | 2.2e-08 | 10.532 | 11.0 | 3.6e-28 | 0.99 | 0.01 | 0.99 | FALSE |
37 | GTEx | Brain Cerebellum | GSS | 0.19 | 0.12 | enet | 15 | 0.19 | 2.9e-06 | 10.517 | 10.7 | 1.3e-26 | 0.90 | 0.02 | 0.93 | FALSE |
38 | GTEx | Brain Cerebellum | PROCR | 0.29 | 0.01 | enet | 34 | 0.13 | 1.1e-04 | -0.655 | 7.9 | 4.0e-15 | 0.52 | 0.04 | 0.25 | FALSE |
39 | GTEx | Brain Cerebellum | MAP1LC3A | 0.30 | 0.31 | enet | 29 | 0.39 | 1.1e-12 | 8.664 | 10.4 | 1.9e-25 | 0.56 | 0.98 | 0.02 | FALSE |
40 | GTEx | Brain Cerebellum | ACSS2 | 0.20 | 0.12 | lasso | 14 | 0.19 | 3.4e-06 | -8.260 | 10.6 | 2.6e-26 | 0.70 | 0.21 | 0.75 | FALSE |
41 | GTEx | Brain Cerebellum | NCOA6 | 0.26 | 0.11 | lasso | 9 | 0.22 | 4.1e-07 | -0.143 | 6.0 | 1.8e-09 | 0.14 | 0.85 | 0.04 | FALSE |
42 | GTEx | Brain Cerebellum | RP4-614O4.12 | 0.20 | 0.05 | lasso | 5 | 0.03 | 3.7e-02 | 8.625 | -8.7 | 3.6e-18 | -0.55 | 0.14 | 0.22 | FALSE |
43 | GTEx | Brain Cortex | GSS | 0.14 | 0.02 | lasso | 3 | 0.00 | 3.7e-01 | -8.725 | 10.7 | 1.0e-26 | 0.56 | 0.07 | 0.46 | FALSE |
44 | GTEx | Brain Cortex | MAP1LC3A | 0.39 | 0.26 | enet | 16 | 0.33 | 6.6e-10 | -8.245 | 9.6 | 1.1e-21 | 0.42 | 0.96 | 0.02 | FALSE |
45 | GTEx | Brain Cortex | NCOA6 | 0.14 | 0.03 | enet | 13 | 0.05 | 1.6e-02 | -9.766 | 6.6 | 3.9e-11 | 0.18 | 0.15 | 0.06 | FALSE |
46 | GTEx | Brain Frontal Cortex BA9 | MAP1LC3A | 0.18 | 0.17 | lasso | 4 | 0.16 | 5.3e-05 | -8.497 | 9.2 | 4.8e-20 | 0.39 | 0.38 | 0.30 | FALSE |
47 | GTEx | Brain Frontal Cortex BA9 | NCOA6 | 0.13 | 0.00 | enet | 30 | 0.06 | 1.3e-02 | -9.817 | 7.5 | 4.2e-14 | 0.17 | 0.18 | 0.05 | TRUE |
48 | GTEx | Brain Hippocampus | E2F1 | 0.39 | 0.25 | lasso | 8 | 0.18 | 4.1e-05 | 9.424 | -8.5 | 2.7e-17 | -0.09 | 0.02 | 0.96 | FALSE |
49 | GTEx | Brain Hypothalamus | MAP1LC3A | 0.19 | 0.05 | lasso | 11 | 0.05 | 2.2e-02 | 8.353 | 10.7 | 1.0e-26 | 0.80 | 0.04 | 0.72 | FALSE |
50 | GTEx | Brain Nucleus accumbens basal ganglia | EDEM2 | 0.17 | 0.00 | lasso | 4 | 0.00 | 2.7e-01 | 9.602 | -8.9 | 8.2e-19 | -0.60 | 0.05 | 0.57 | FALSE |
51 | GTEx | Brain Nucleus accumbens basal ganglia | NCOA6 | 0.24 | 0.01 | lasso | 12 | 0.08 | 3.2e-03 | -9.766 | 7.1 | 1.3e-12 | 0.25 | 0.23 | 0.18 | FALSE |
52 | GTEx | Brain Putamen basal ganglia | E2F1 | 0.18 | 0.22 | lasso | 6 | 0.21 | 1.2e-05 | 9.424 | -9.2 | 3.5e-20 | -0.08 | 0.02 | 0.96 | FALSE |
53 | GTEx | Breast Mammary Tissue | ITCH | 0.09 | 0.04 | enet | 28 | 0.09 | 2.5e-05 | 8.755 | -10.0 | 1.6e-23 | -0.53 | 0.45 | 0.49 | FALSE |
54 | GTEx | Breast Mammary Tissue | UQCC1 | 0.10 | 0.06 | lasso | 8 | 0.08 | 5.3e-05 | -9.232 | -5.5 | 5.1e-08 | -0.48 | 0.57 | 0.10 | FALSE |
55 | GTEx | Breast Mammary Tissue | MAP1LC3A | 0.16 | 0.15 | enet | 19 | 0.14 | 1.8e-07 | -8.526 | 9.6 | 1.1e-21 | 0.40 | 1.00 | 0.00 | FALSE |
56 | GTEx | Breast Mammary Tissue | NCOA6 | 0.12 | 0.02 | enet | 35 | 0.04 | 4.5e-03 | -8.481 | 7.4 | 1.9e-13 | 0.13 | 0.38 | 0.03 | FALSE |
57 | GTEx | Breast Mammary Tissue | RP4-614O4.12 | 0.10 | 0.10 | lasso | 2 | 0.09 | 3.0e-05 | -8.300 | -9.5 | 3.1e-21 | -0.49 | 0.78 | 0.16 | FALSE |
58 | GTEx | Breast Mammary Tissue (Male) | MAP1LC3A | 0.13 | 0.05 | enet | 12 | 0.00 | 3.4e-01 | -8.834 | 9.3 | 9.6e-21 | 0.37 | 0.07 | 0.07 | FALSE |
59 | GTEx | Breast Mammary Tissue (Male) | NCOA6 | 0.05 | 0.06 | lasso | 2 | 0.03 | 7.2e-02 | -8.481 | 8.5 | 2.2e-17 | 0.35 | 0.05 | 0.06 | FALSE |
60 | GTEx | Breast Mammary Tissue (Male) | RP4-614O4.12 | 0.09 | 0.06 | enet | 3 | 0.02 | 1.0e-01 | -8.300 | -8.5 | 2.6e-17 | -0.40 | 0.04 | 0.17 | FALSE |
61 | GTEx | Breast Mammary Tissue (Female) | ITCH | 0.09 | 0.02 | enet | 16 | 0.06 | 8.2e-03 | -4.524 | -9.3 | 8.6e-21 | -0.33 | 0.14 | 0.34 | FALSE |
62 | GTEx | Breast Mammary Tissue (Female) | UQCC1 | 0.13 | 0.03 | lasso | 7 | 0.03 | 5.5e-02 | -9.232 | -8.4 | 5.7e-17 | -0.31 | 0.10 | 0.06 | FALSE |
63 | GTEx | Breast Mammary Tissue (Female) | MAP1LC3A | 0.12 | 0.05 | lasso | 10 | 0.05 | 1.0e-02 | 8.664 | 10.0 | 1.6e-23 | 0.52 | 0.35 | 0.20 | FALSE |
64 | GTEx | Breast Mammary Tissue (Female) | RP4-614O4.12 | 0.11 | 0.02 | enet | 28 | 0.05 | 9.9e-03 | -8.300 | -6.8 | 9.1e-12 | -0.07 | 0.17 | 0.05 | TRUE |
65 | GTEx | Cells EBV-transformed lymphocytes | EDEM2 | 0.15 | 0.17 | lasso | 4 | 0.15 | 1.3e-05 | 10.065 | -9.1 | 6.6e-20 | -0.83 | 0.03 | 0.94 | FALSE |
66 | GTEx | Cells EBV-transformed lymphocytes | NCOA6 | 0.11 | 0.06 | enet | 15 | 0.06 | 3.9e-03 | 9.420 | -9.1 | 7.2e-20 | -0.62 | 0.16 | 0.40 | FALSE |
67 | GTEx | Cells EBV-transformed lymphocytes | RP4-614O4.12 | 0.18 | 0.06 | enet | 13 | 0.06 | 4.3e-03 | -8.300 | -7.9 | 2.2e-15 | -0.31 | 0.22 | 0.08 | FALSE |
68 | GTEx | Cells Transformed fibroblasts | EDEM2 | 0.08 | 0.02 | lasso | 5 | 0.03 | 1.8e-03 | 10.532 | -6.2 | 5.7e-10 | -0.80 | 0.02 | 0.96 | FALSE |
69 | GTEx | Cells Transformed fibroblasts | MAP1LC3A | 0.07 | 0.07 | enet | 19 | 0.06 | 3.4e-05 | 8.730 | 9.0 | 1.5e-19 | 0.40 | 1.00 | 0.00 | FALSE |
70 | GTEx | Colon Sigmoid | MAP1LC3A | 0.10 | 0.04 | enet | 19 | 0.10 | 3.1e-04 | 8.574 | 9.1 | 8.8e-20 | 0.35 | 0.70 | 0.05 | FALSE |
71 | GTEx | Colon Sigmoid | PIGU | 0.13 | 0.09 | enet | 10 | 0.12 | 6.9e-05 | -8.260 | 8.1 | 8.2e-16 | 0.44 | 0.49 | 0.06 | FALSE |
72 | GTEx | Colon Sigmoid | NCOA6 | 0.08 | 0.06 | lasso | 10 | 0.04 | 1.8e-02 | -8.260 | 8.7 | 4.3e-18 | 0.39 | 0.19 | 0.08 | FALSE |
73 | GTEx | Colon Transverse | MYH7B | 0.14 | 0.01 | enet | 20 | 0.01 | 8.4e-02 | 7.895 | 9.7 | 2.3e-22 | 0.58 | 0.08 | 0.66 | FALSE |
74 | GTEx | Colon Transverse | UQCC1 | 0.11 | 0.01 | lasso | 4 | 0.01 | 1.0e-01 | 5.691 | -7.4 | 1.8e-13 | -0.57 | 0.07 | 0.18 | FALSE |
75 | GTEx | Colon Transverse | MAP1LC3A | 0.15 | 0.14 | lasso | 3 | 0.09 | 3.2e-05 | 8.692 | 8.8 | 8.6e-19 | 0.42 | 0.96 | 0.02 | FALSE |
76 | GTEx | Esophagus Gastroesophageal Junction | MAP1LC3A | 0.14 | 0.09 | enet | 9 | 0.07 | 1.4e-03 | -8.549 | 6.2 | 5.2e-10 | 0.34 | 0.59 | 0.02 | FALSE |
77 | GTEx | Esophagus Mucosa | MYH7B | 0.11 | 0.03 | enet | 20 | 0.03 | 2.2e-03 | 10.561 | 9.6 | 6.8e-22 | 0.85 | 0.01 | 0.97 | FALSE |
78 | GTEx | Esophagus Mucosa | E2F1 | 0.07 | 0.04 | enet | 9 | 0.03 | 5.8e-03 | 6.407 | 6.9 | 4.1e-12 | 0.02 | 0.08 | 0.80 | FALSE |
79 | GTEx | Esophagus Mucosa | GGT7 | 0.08 | 0.03 | lasso | 3 | 0.04 | 1.1e-03 | -9.263 | -7.2 | 7.4e-13 | -0.16 | 0.76 | 0.03 | FALSE |
80 | GTEx | Esophagus Mucosa | NCOA6 | 0.10 | 0.06 | lasso | 16 | 0.09 | 8.0e-07 | -8.379 | 7.2 | 7.8e-13 | 0.26 | 0.90 | 0.06 | FALSE |
81 | GTEx | Esophagus Mucosa | RP4-614O4.12 | 0.12 | 0.07 | enet | 16 | 0.06 | 6.7e-05 | -8.307 | -6.9 | 6.4e-12 | -0.27 | 0.84 | 0.01 | FALSE |
82 | GTEx | Esophagus Muscularis | ITCH | 0.07 | 0.02 | lasso | 3 | 0.01 | 6.3e-02 | 9.535 | -9.8 | 1.3e-22 | -0.52 | 0.44 | 0.06 | FALSE |
83 | GTEx | Esophagus Muscularis | GSS | 0.05 | 0.00 | enet | 4 | 0.00 | 4.2e-01 | -8.215 | 6.2 | 5.8e-10 | 0.11 | 0.18 | 0.04 | FALSE |
84 | GTEx | Esophagus Muscularis | MAP1LC3A | 0.18 | 0.19 | enet | 28 | 0.23 | 2.3e-14 | 8.692 | 8.5 | 2.5e-17 | 0.37 | 1.00 | 0.00 | FALSE |
85 | GTEx | Esophagus Muscularis | NCOA6 | 0.14 | 0.10 | enet | 22 | 0.20 | 2.6e-12 | -9.817 | 5.8 | 9.1e-09 | 0.09 | 0.98 | 0.02 | FALSE |
86 | GTEx | Esophagus Muscularis | RP4-614O4.12 | 0.11 | 0.09 | lasso | 4 | 0.12 | 1.3e-07 | 1.768 | -5.6 | 2.7e-08 | -0.03 | 0.97 | 0.00 | FALSE |
87 | GTEx | Heart Atrial Appendage | EDEM2 | 0.18 | 0.04 | enet | 12 | 0.09 | 7.5e-05 | -2.115 | -6.0 | 1.5e-09 | -0.44 | 0.18 | 0.40 | FALSE |
88 | GTEx | Heart Atrial Appendage | MAP1LC3A | 0.12 | 0.09 | enet | 16 | 0.16 | 1.4e-07 | 9.496 | 10.1 | 4.7e-24 | 0.50 | 0.97 | 0.01 | FALSE |
89 | GTEx | Heart Left Ventricle | PROCR | 0.10 | 0.04 | enet | 8 | 0.05 | 1.6e-03 | 9.804 | -9.8 | 7.7e-23 | -0.76 | 0.16 | 0.43 | FALSE |
90 | GTEx | Heart Left Ventricle | MAP1LC3A | 0.12 | 0.11 | lasso | 14 | 0.13 | 1.8e-07 | -8.511 | 9.3 | 1.3e-20 | 0.41 | 1.00 | 0.00 | FALSE |
91 | GTEx | Heart Left Ventricle | NCOA6 | 0.09 | 0.01 | enet | 19 | 0.05 | 1.1e-03 | -9.806 | 8.5 | 2.1e-17 | 0.37 | 0.51 | 0.06 | FALSE |
92 | GTEx | Lung | MYH7B | 0.06 | 0.03 | lasso | 3 | 0.03 | 1.6e-03 | 4.338 | 7.0 | 3.0e-12 | 0.75 | 0.02 | 0.95 | FALSE |
93 | GTEx | Lung | GSS | 0.06 | 0.04 | enet | 10 | 0.01 | 5.3e-02 | 10.245 | 8.8 | 1.3e-18 | 0.38 | 0.49 | 0.24 | FALSE |
94 | GTEx | Lung | MAP1LC3A | 0.08 | 0.09 | lasso | 2 | 0.09 | 1.6e-07 | 8.664 | 8.7 | 3.9e-18 | 0.45 | 1.00 | 0.00 | FALSE |
95 | GTEx | Lung | NCOA6 | 0.10 | 0.08 | lasso | 9 | 0.10 | 5.2e-08 | -9.798 | 6.2 | 5.6e-10 | 0.07 | 0.96 | 0.03 | FALSE |
96 | GTEx | Lung | RP4-614O4.12 | 0.07 | 0.14 | lasso | 1 | 0.13 | 7.1e-10 | -8.300 | -8.3 | 1.0e-16 | -0.41 | 1.00 | 0.00 | FALSE |
97 | GTEx | Muscle Skeletal | CBFA2T2 | 0.05 | 0.01 | enet | 15 | 0.01 | 2.0e-02 | 8.088 | -8.0 | 1.1e-15 | -0.08 | 0.10 | 0.86 | FALSE |
98 | GTEx | Muscle Skeletal | GSS | 0.04 | 0.05 | enet | 11 | 0.03 | 2.7e-04 | -8.854 | 8.3 | 1.3e-16 | 0.28 | 0.88 | 0.01 | FALSE |
99 | GTEx | Muscle Skeletal | MAP1LC3A | 0.03 | 0.03 | lasso | 3 | 0.03 | 7.1e-04 | 8.687 | 9.2 | 3.2e-20 | 0.42 | 0.80 | 0.02 | FALSE |
100 | GTEx | Muscle Skeletal | GGT7 | 0.07 | 0.02 | enet | 26 | 0.03 | 7.2e-04 | 9.339 | 5.5 | 3.2e-08 | 0.27 | 0.92 | 0.02 | FALSE |
101 | GTEx | Nerve Tibial | MYH7B | 0.21 | 0.12 | lasso | 8 | 0.12 | 9.7e-09 | 10.532 | 10.0 | 1.2e-23 | 0.92 | 0.01 | 0.99 | FALSE |
102 | GTEx | Nerve Tibial | EDEM2 | 0.21 | 0.19 | enet | 29 | 0.17 | 4.9e-12 | 7.811 | -5.3 | 1.4e-07 | -0.65 | 0.98 | 0.02 | FALSE |
103 | GTEx | Nerve Tibial | GSS | 0.04 | 0.05 | lasso | 6 | 0.03 | 3.5e-03 | -8.379 | 8.3 | 1.1e-16 | 0.38 | 0.50 | 0.02 | FALSE |
104 | GTEx | Nerve Tibial | MAP1LC3A | 0.19 | 0.24 | enet | 18 | 0.22 | 1.0e-15 | -8.535 | 9.1 | 7.9e-20 | 0.42 | 1.00 | 0.00 | FALSE |
105 | GTEx | Nerve Tibial | NCOA6 | 0.24 | 0.12 | enet | 50 | 0.20 | 5.2e-14 | -0.373 | 6.6 | 4.7e-11 | 0.22 | 0.98 | 0.02 | FALSE |
106 | GTEx | Nerve Tibial | RP4-614O4.12 | 0.27 | 0.24 | enet | 12 | 0.24 | 6.3e-17 | -8.300 | -7.8 | 5.6e-15 | -0.39 | 1.00 | 0.00 | FALSE |
107 | GTEx | Ovary | MAP1LC3A | 0.10 | 0.03 | lasso | 5 | 0.08 | 6.3e-03 | 7.663 | 9.1 | 1.4e-19 | 0.39 | 0.14 | 0.12 | FALSE |
108 | GTEx | Ovary | RP4-614O4.12 | 0.23 | 0.13 | lasso | 3 | 0.19 | 2.3e-05 | -5.755 | -6.9 | 5.0e-12 | -0.35 | 0.15 | 0.05 | FALSE |
109 | GTEx | Pancreas | EDEM2 | 0.20 | 0.23 | lasso | 8 | 0.23 | 3.5e-10 | 9.804 | 9.5 | 2.2e-21 | 0.84 | 0.61 | 0.39 | FALSE |
110 | GTEx | Pancreas | PROCR | 0.40 | 0.13 | lasso | 13 | 0.18 | 5.4e-08 | 9.714 | 9.3 | 1.2e-20 | 0.75 | 0.40 | 0.60 | FALSE |
111 | GTEx | Pancreas | MAP1LC3A | 0.06 | 0.09 | lasso | 4 | 0.08 | 3.0e-04 | 8.594 | 8.3 | 6.6e-17 | 0.39 | 0.60 | 0.04 | FALSE |
112 | GTEx | Pituitary | MAP1LC3A | 0.26 | 0.29 | enet | 19 | 0.29 | 5.9e-08 | 8.575 | 8.6 | 6.3e-18 | 0.43 | 0.97 | 0.00 | FALSE |
113 | GTEx | Prostate | MAP1LC3A | 0.33 | 0.26 | lasso | 8 | 0.31 | 1.6e-08 | 8.692 | 9.4 | 7.9e-21 | 0.41 | 0.96 | 0.01 | FALSE |
114 | GTEx | Prostate | GGT7 | 0.45 | 0.02 | enet | 31 | 0.12 | 6.8e-04 | -1.347 | -5.7 | 1.5e-08 | -0.30 | 0.07 | 0.07 | FALSE |
115 | GTEx | Skin Not Sun Exposed Suprapubic | GGT7 | 0.08 | 0.07 | lasso | 3 | 0.10 | 4.9e-06 | 8.482 | -9.7 | 2.2e-22 | -0.45 | 0.42 | 0.05 | FALSE |
116 | GTEx | Skin Not Sun Exposed Suprapubic | RP4-614O4.12 | 0.10 | 0.13 | lasso | 3 | 0.10 | 5.8e-06 | -8.300 | -8.3 | 1.0e-16 | -0.41 | 0.99 | 0.00 | FALSE |
117 | GTEx | Skin Sun Exposed Lower leg | ITCH | 0.04 | 0.04 | enet | 11 | 0.04 | 6.3e-04 | -8.564 | -9.2 | 3.0e-20 | -0.42 | 0.84 | 0.03 | FALSE |
118 | GTEx | Skin Sun Exposed Lower leg | MYH7B | 0.11 | 0.00 | enet | 23 | 0.04 | 1.6e-04 | 10.394 | 6.2 | 6.3e-10 | 0.63 | 0.02 | 0.86 | FALSE |
119 | GTEx | Skin Sun Exposed Lower leg | GSS | 0.15 | 0.07 | enet | 10 | 0.05 | 6.7e-05 | -8.534 | 8.7 | 4.8e-18 | 0.50 | 0.98 | 0.01 | FALSE |
120 | GTEx | Skin Sun Exposed Lower leg | PROCR | 0.05 | 0.06 | lasso | 3 | 0.04 | 1.4e-04 | 9.765 | -9.8 | 1.6e-22 | -0.51 | 0.08 | 0.61 | FALSE |
121 | GTEx | Skin Sun Exposed Lower leg | MAP1LC3A | 0.03 | 0.04 | lasso | 3 | 0.04 | 4.7e-04 | -8.834 | 10.1 | 4.0e-24 | 0.46 | 0.53 | 0.03 | FALSE |
122 | GTEx | Skin Sun Exposed Lower leg | GGT7 | 0.04 | 0.04 | lasso | 3 | 0.02 | 5.3e-03 | -8.379 | -8.6 | 1.2e-17 | -0.39 | 0.75 | 0.04 | FALSE |
123 | GTEx | Skin Sun Exposed Lower leg | NCOA6 | 0.08 | 0.06 | lasso | 3 | 0.07 | 1.3e-06 | -8.182 | 8.2 | 1.8e-16 | 0.30 | 0.97 | 0.02 | FALSE |
124 | GTEx | Skin Sun Exposed Lower leg | RP4-614O4.12 | 0.17 | 0.20 | lasso | 4 | 0.19 | 2.4e-15 | -8.300 | -8.5 | 1.8e-17 | -0.44 | 1.00 | 0.00 | FALSE |
125 | GTEx | Small Intestine Terminal Ileum | MAP1LC3A | 0.45 | 0.01 | lasso | 9 | 0.05 | 3.3e-02 | -1.628 | -5.5 | 4.2e-08 | -0.30 | 0.12 | 0.13 | FALSE |
126 | GTEx | Spleen | PROCR | 0.35 | 0.31 | lasso | 6 | 0.29 | 4.8e-08 | 9.804 | 9.4 | 3.6e-21 | 0.80 | 0.34 | 0.55 | FALSE |
127 | GTEx | Spleen | MAP1LC3A | 0.28 | 0.05 | enet | 14 | 0.13 | 3.4e-04 | 7.663 | 6.3 | 2.8e-10 | 0.23 | 0.17 | 0.05 | FALSE |
128 | GTEx | Spleen | NCOA6 | 0.27 | 0.28 | lasso | 3 | 0.32 | 6.0e-09 | -9.806 | 8.7 | 3.0e-18 | 0.25 | 0.85 | 0.07 | FALSE |
129 | GTEx | Stomach | MAP1LC3A | 0.10 | 0.04 | enet | 10 | 0.05 | 1.3e-03 | -8.535 | 8.2 | 3.5e-16 | 0.43 | 0.31 | 0.13 | FALSE |
130 | GTEx | Testis | CBFA2T2 | 0.10 | 0.07 | enet | 11 | 0.07 | 6.1e-04 | 8.967 | -8.2 | 2.8e-16 | -0.02 | 0.14 | 0.72 | FALSE |
131 | GTEx | Testis | MAP1LC3A | 0.42 | 0.38 | enet | 33 | 0.40 | 3.0e-19 | 8.582 | 8.6 | 5.8e-18 | 0.43 | 1.00 | 0.00 | FALSE |
132 | GTEx | Testis | PIGU | 0.38 | 0.48 | lasso | 6 | 0.47 | 1.9e-23 | -8.725 | 9.0 | 1.8e-19 | 0.32 | 1.00 | 0.00 | FALSE |
133 | GTEx | Testis | NCOA6 | 0.27 | 0.18 | lasso | 20 | 0.26 | 4.1e-12 | -0.155 | 5.4 | 7.7e-08 | 0.09 | 1.00 | 0.00 | FALSE |
134 | GTEx | Thyroid | CBFA2T2 | 0.11 | 0.05 | enet | 18 | 0.06 | 2.6e-05 | -2.561 | -5.7 | 1.0e-08 | -0.03 | 0.15 | 0.82 | FALSE |
135 | GTEx | Thyroid | MYH7B | 0.06 | 0.03 | enet | 15 | 0.06 | 3.6e-05 | 9.753 | 10.0 | 1.0e-23 | 0.77 | 0.05 | 0.94 | FALSE |
136 | GTEx | Thyroid | EDEM2 | 0.13 | 0.04 | enet | 13 | 0.08 | 4.9e-07 | 10.454 | -10.2 | 2.2e-24 | -0.93 | 0.01 | 0.99 | FALSE |
137 | GTEx | Thyroid | MAP1LC3A | 0.17 | 0.27 | enet | 19 | 0.26 | 2.7e-20 | 8.730 | 9.2 | 2.7e-20 | 0.46 | 1.00 | 0.00 | FALSE |
138 | GTEx | Thyroid | RP4-614O4.12 | 0.08 | 0.08 | lasso | 5 | 0.07 | 6.8e-06 | -8.300 | -8.1 | 4.2e-16 | -0.47 | 0.96 | 0.01 | FALSE |
139 | GTEx | Whole Blood | MAP1LC3A | 0.05 | 0.03 | enet | 15 | 0.00 | 1.8e-01 | 8.737 | 6.8 | 1.1e-11 | 0.38 | 0.53 | 0.02 | FALSE |
140 | GTEx | Whole Blood | RP4-614O4.12 | 0.04 | 0.03 | enet | 9 | 0.03 | 1.2e-03 | -8.278 | -8.9 | 4.9e-19 | -0.43 | 0.40 | 0.06 | FALSE |
141 | METSIM | Adipose | EDEM2 | 0.04 | 0.05 | lasso | 2 | 0.04 | 3.9e-07 | 9.804 | -9.8 | 1.1e-22 | -0.83 | 0.13 | 0.87 | FALSE |
142 | METSIM | Adipose | MAP1LC3A | 0.05 | 0.06 | blup | 309 | 0.06 | 7.2e-09 | 8.582 | 6.8 | 1.3e-11 | 0.27 | 1.00 | 0.00 | FALSE |
143 | METSIM | Adipose | RP4-614O4.12 | 0.06 | 0.06 | lasso | 4 | 0.06 | 5.1e-09 | -8.333 | -9.1 | 1.1e-19 | -0.47 | 0.99 | 0.01 | FALSE |
144 | METSIM | Adipose | TRPC4AP | 0.04 | 0.03 | lasso | 5 | 0.04 | 1.1e-06 | 10.517 | -10.4 | 3.7e-25 | -0.92 | 0.01 | 0.99 | FALSE |
145 | NTR | Blood | NCOA6 | 0.02 | 0.02 | lasso | 2 | 0.02 | 5.7e-06 | -9.798 | 9.8 | 1.1e-22 | 0.43 | 0.95 | 0.05 | FALSE |
146 | ROSMAP | Brain Pre-frontal Cortex | EDEM2 | 0.10 | 0.08 | lasso | 5 | 0.07 | 2.0e-09 | 10.065 | -10.1 | 4.7e-24 | -0.88 | 0.12 | 0.88 | FALSE |
147 | ROSMAP | Brain Pre-frontal Cortex | MAP1LC3A | 0.33 | 0.51 | lasso | 7 | 0.56 | 1.4e-87 | -8.725 | 9.3 | 1.9e-20 | 0.38 | 1.00 | 0.00 | FALSE |
148 | ROSMAP | Brain Pre-frontal Cortex | RALY | 0.09 | 0.16 | lasso | 7 | 0.15 | 2.7e-18 | -5.725 | -6.8 | 9.7e-12 | -0.34 | 1.00 | 0.00 | TRUE |
149 | ROSMAP | Brain Pre-frontal Cortex | GGT7 | 0.02 | 0.03 | lasso | 1 | 0.03 | 1.5e-04 | -8.904 | -8.9 | 5.4e-19 | -0.44 | 0.40 | 0.05 | FALSE |
150 | ROSMAP | Brain Pre-frontal Cortex | ACSS2 | 0.07 | 0.06 | blup | 353 | 0.07 | 9.4e-10 | -8.379 | 9.1 | 1.2e-19 | 0.32 | 1.00 | 0.00 | FALSE |
151 | ROSMAP | Brain Pre-frontal Cortex | NCOA6 | 0.07 | 0.08 | blup | 365 | 0.09 | 1.9e-11 | -9.806 | 7.8 | 5.8e-15 | 0.26 | 0.95 | 0.05 | FALSE |
152 | YFS | Blood | EDEM2 | 0.08 | 0.09 | lasso | 4 | 0.10 | 1.2e-29 | 10.065 | -8.6 | 1.0e-17 | -0.89 | 0.58 | 0.42 | FALSE |
153 | YFS | Blood | GGT7 | 0.07 | 0.08 | lasso | 9 | 0.09 | 4.3e-28 | 9.635 | -9.7 | 2.3e-22 | -0.53 | 0.99 | 0.01 | FALSE |
154 | YFS | Blood | NCOA6 | 0.03 | 0.03 | blup | 368 | 0.03 | 6.9e-10 | -9.740 | 7.3 | 2.6e-13 | 0.24 | 0.97 | 0.03 | FALSE |
155 | YFS | Blood | TRPC4AP | 0.21 | 0.16 | bslmm | 372 | 0.22 | 2.5e-69 | 10.517 | 7.8 | 4.9e-15 | 0.87 | 0.01 | 0.99 | FALSE |
156 | The Cancer Genome Atlas | Breast Invasive Carcinoma | NCOA6 | 0.02 | 0.01 | blup | 66 | 0.02 | 1.5e-04 | -9.267 | 6.4 | 1.6e-10 | 0.16 | 0.05 | 0.80 | FALSE |
157 | The Cancer Genome Atlas | Colon Adenocarcinoma | CBFA2T2 | 0.13 | 0.04 | lasso | 1 | 0.03 | 1.1e-02 | 9.409 | -9.4 | 5.0e-21 | -0.10 | 0.01 | 0.70 | TRUE |
158 | The Cancer Genome Atlas | Colon Adenocarcinoma | GGT7 | 0.06 | 0.05 | blup | 40 | 0.05 | 4.2e-04 | 9.339 | -9.6 | 1.1e-21 | -0.47 | 0.01 | 0.88 | FALSE |
159 | The Cancer Genome Atlas | Glioblastoma Multiforme | EDEM2 | 0.51 | 0.05 | lasso | 7 | 0.15 | 3.1e-05 | 9.786 | -9.5 | 1.7e-21 | -0.75 | 0.01 | 0.96 | FALSE |
160 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | GSS | 0.02 | 0.02 | blup | 52 | 0.02 | 1.4e-03 | -8.296 | 7.0 | 3.0e-12 | 0.18 | 0.30 | 0.02 | FALSE |
161 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | TRPC4AP | 0.05 | 0.03 | enet | 10 | 0.04 | 7.1e-05 | 9.786 | -5.2 | 1.9e-07 | -0.78 | 0.02 | 0.92 | FALSE |
162 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | NCOA6 | 0.04 | 0.04 | blup | 65 | 0.03 | 1.3e-04 | -9.806 | 7.2 | 7.7e-13 | 0.22 | 0.02 | 0.96 | FALSE |
163 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | C20orf134 | 0.04 | 0.02 | enet | 11 | 0.01 | 1.2e-01 | 4.124 | 5.2 | 1.8e-07 | 0.09 | 0.02 | 0.62 | FALSE |
164 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | NCOA6 | 0.15 | 0.06 | blup | 65 | 0.06 | 1.9e-04 | -9.798 | 5.6 | 1.7e-08 | 0.12 | 0.03 | 0.84 | FALSE |
165 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CBFA2T2 | 0.02 | 0.01 | blup | 31 | 0.01 | 1.8e-02 | 9.228 | -8.0 | 9.7e-16 | -0.07 | 0.01 | 0.70 | FALSE |
166 | The Cancer Genome Atlas | Brain Lower Grade Glioma | EDEM2 | 0.07 | 0.02 | blup | 102 | 0.04 | 2.1e-05 | 7.811 | -6.5 | 9.1e-11 | -0.78 | 0.00 | 0.99 | FALSE |
167 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MAP1LC3A | 0.02 | 0.03 | lasso | 3 | 0.02 | 8.3e-04 | -8.542 | 8.6 | 1.1e-17 | 0.42 | 0.04 | 0.92 | FALSE |
168 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PIGU | 0.03 | 0.02 | blup | 73 | 0.02 | 3.7e-03 | -8.284 | 7.8 | 4.4e-15 | 0.22 | 0.13 | 0.14 | FALSE |
169 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | NCOA6 | 0.07 | 0.04 | blup | 65 | 0.05 | 2.0e-03 | -8.287 | 9.0 | 3.1e-19 | 0.35 | 0.04 | 0.69 | FALSE |
170 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | TP53INP2 | 0.02 | 0.02 | lasso | 3 | 0.01 | 1.4e-02 | -9.809 | -9.8 | 1.0e-22 | -0.43 | 0.01 | 0.78 | FALSE |
171 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | GSS | 0.03 | 0.00 | blup | 52 | 0.02 | 2.2e-02 | 8.482 | 7.0 | 1.9e-12 | 0.23 | 0.08 | 0.03 | FALSE |
172 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | ITCH | 0.14 | 0.04 | lasso | 4 | 0.03 | 3.8e-03 | -9.417 | -9.3 | 1.1e-20 | -0.25 | 0.00 | 0.73 | FALSE |
173 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GGT7 | 0.05 | 0.02 | enet | 6 | 0.03 | 3.3e-04 | 9.518 | -6.6 | 4.0e-11 | -0.23 | 0.03 | 0.89 | FALSE |
174 | The Cancer Genome Atlas | Prostate Adenocarcinoma | NCOA6 | 0.05 | 0.05 | lasso | 5 | 0.04 | 3.4e-05 | -9.798 | 8.3 | 9.3e-17 | 0.31 | 0.03 | 0.95 | FALSE |
175 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | EDEM2 | 0.19 | 0.03 | blup | 102 | 0.08 | 4.3e-03 | 10.065 | -5.9 | 3.2e-09 | -0.64 | 0.01 | 0.64 | FALSE |
176 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | NCOA6 | 0.29 | 0.05 | blup | 65 | 0.05 | 7.1e-03 | -8.287 | 7.3 | 4.0e-13 | 0.25 | 0.03 | 0.54 | TRUE |
177 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | PIGU | 0.10 | 0.10 | lasso | 2 | 0.10 | 2.8e-04 | -8.542 | 8.8 | 1.3e-18 | 0.35 | 0.14 | 0.51 | FALSE |
178 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | PROCR | 0.18 | 0.00 | blup | 44 | 0.14 | 1.7e-05 | 5.599 | -6.9 | 6.0e-12 | -0.70 | 0.01 | 0.83 | FALSE |
179 | The Cancer Genome Atlas | Thyroid Carcinoma | ITCH | 0.04 | 0.06 | blup | 64 | 0.06 | 8.4e-07 | -8.245 | 8.1 | 3.9e-16 | 0.41 | 0.26 | 0.74 | FALSE |
180 | The Cancer Genome Atlas | Thyroid Carcinoma | MYH7B | 0.02 | 0.02 | lasso | 4 | 0.02 | 2.7e-03 | -8.262 | 8.5 | 2.5e-17 | 0.40 | 0.16 | 0.08 | FALSE |
181 | The Cancer Genome Atlas | Thyroid Carcinoma | NCOA6 | 0.03 | 0.01 | blup | 65 | 0.02 | 5.2e-03 | -0.096 | 5.4 | 6.1e-08 | 0.10 | 0.03 | 0.24 | FALSE |
182 | The Cancer Genome Atlas | Thyroid Carcinoma | RALY | 0.05 | 0.04 | blup | 53 | 0.05 | 1.6e-05 | -5.478 | 5.7 | 9.5e-09 | 0.32 | 0.03 | 0.96 | FALSE |