Best TWAS P=1.67e-14 · Best GWAS P=2.25e-13 conditioned to 0.442
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | IK | 0.03 | 0.02 | lasso | 6 | 0.03 | 6.0e-05 | 2.6 | 5.4 | 7.8e-08 | 0.82 | 0.05 | 0.94 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | NDUFA2 | 0.02 | 0.01 | bslmm | 343 | 0.01 | 7.8e-03 | 6.7 | -6.7 | 1.6e-11 | -0.83 | 0.06 | 0.78 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | PCDHA10 | 0.63 | 0.34 | lasso | 13 | 0.55 | 3.5e-80 | -4.9 | 7.1 | 1.3e-12 | 0.49 | 1.00 | 0.00 | FALSE |
4 | CommonMind | Brain Pre-frontal Cortex | PCDHA2 | 0.04 | 0.03 | blup | 478 | 0.03 | 5.0e-05 | 7.3 | 6.6 | 3.7e-11 | 0.83 | 0.04 | 0.96 | FALSE |
5 | CommonMind | Brain Pre-frontal Cortex | PCDHA4 | 0.07 | 0.05 | lasso | 3 | 0.06 | 7.6e-08 | -4.9 | 6.4 | 1.6e-10 | 0.43 | 0.67 | 0.20 | FALSE |
6 | CommonMind | Brain Pre-frontal Cortex | PCDHA6 | 0.13 | 0.07 | enet | 34 | 0.07 | 4.6e-09 | -5.0 | -5.3 | 9.9e-08 | -0.16 | 1.00 | 0.00 | TRUE |
7 | CommonMind | Brain Pre-frontal Cortex | PCDHA7 | 0.13 | 0.14 | lasso | 8 | 0.14 | 5.1e-17 | 6.7 | 6.8 | 1.1e-11 | 0.88 | 0.26 | 0.74 | FALSE |
8 | CommonMind | Brain Pre-frontal Cortex | PCDHA8 | 0.14 | 0.12 | blup | 460 | 0.15 | 6.6e-18 | 6.7 | 6.4 | 1.3e-10 | 0.79 | 0.16 | 0.84 | FALSE |
9 | CommonMind | Brain Pre-frontal Cortex | PCDHAC1 | 0.04 | 0.00 | bslmm | 442 | 0.01 | 6.4e-03 | -5.0 | 6.8 | 1.1e-11 | 0.65 | 0.05 | 0.72 | FALSE |
10 | CommonMind | Brain Pre-frontal Cortex | PCDHB13 | 0.06 | 0.01 | blup | 452 | 0.02 | 5.2e-03 | 2.4 | 5.7 | 1.1e-08 | 0.56 | 0.71 | 0.12 | FALSE |
11 | CommonMind | Brain Pre-frontal Cortex | SPATA24 | 0.05 | 0.03 | lasso | 3 | 0.04 | 1.4e-05 | -5.4 | -5.6 | 2.9e-08 | -0.04 | 0.05 | 0.90 | FALSE |
12 | CommonMind | Brain Pre-frontal Cortex | ZMAT2 | 0.06 | 0.10 | blup | 360 | 0.09 | 1.4e-11 | 7.1 | 7.2 | 6.4e-13 | 0.85 | 0.04 | 0.96 | FALSE |
13 | GTEx | Adipose Subcutaneous | IK | 0.16 | 0.07 | lasso | 5 | 0.07 | 2.7e-06 | 7.1 | 6.2 | 4.9e-10 | 0.93 | 0.03 | 0.97 | FALSE |
14 | GTEx | Adipose Visceral Omentum | TMCO6 | 0.06 | 0.01 | enet | 7 | 0.03 | 1.3e-02 | 5.4 | 6.9 | 7.2e-12 | 0.73 | 0.16 | 0.58 | FALSE |
15 | GTEx | Adrenal Gland | DNAJC18 | 0.30 | 0.25 | lasso | 2 | 0.23 | 8.1e-09 | -5.9 | -5.8 | 5.1e-09 | -0.06 | 0.00 | 1.00 | FALSE |
16 | GTEx | Artery Aorta | TMCO6 | 0.11 | 0.12 | lasso | 3 | 0.11 | 1.5e-06 | 5.2 | 5.7 | 1.3e-08 | 0.53 | 0.58 | 0.31 | FALSE |
17 | GTEx | Artery Tibial | TMCO6 | 0.04 | 0.04 | enet | 5 | 0.04 | 4.1e-04 | -5.0 | 6.8 | 1.4e-11 | 0.82 | 0.12 | 0.86 | FALSE |
18 | GTEx | Artery Tibial | IK | 0.06 | 0.04 | enet | 13 | 0.05 | 1.3e-04 | 6.8 | 6.6 | 4.1e-11 | 0.87 | 0.04 | 0.95 | FALSE |
19 | GTEx | Artery Tibial | DNAJC18 | 0.07 | 0.08 | lasso | 2 | 0.06 | 2.3e-05 | -5.9 | -5.9 | 4.2e-09 | -0.05 | 0.00 | 1.00 | FALSE |
20 | GTEx | Artery Tibial | SRA1 | 0.07 | 0.02 | lasso | 10 | 0.02 | 7.8e-03 | 5.6 | 6.5 | 9.9e-11 | 0.68 | 0.07 | 0.69 | FALSE |
21 | GTEx | Artery Tibial | PROB1 | 0.06 | 0.09 | enet | 10 | 0.08 | 5.9e-07 | -5.9 | 6.3 | 3.4e-10 | 0.04 | 0.00 | 1.00 | FALSE |
22 | GTEx | Brain Cerebellar Hemisphere | TMCO6 | 0.35 | 0.33 | lasso | 5 | 0.28 | 7.2e-08 | 5.2 | 5.7 | 1.3e-08 | 0.61 | 0.60 | 0.38 | FALSE |
23 | GTEx | Brain Cerebellar Hemisphere | WDR55 | 0.11 | 0.07 | enet | 10 | -0.01 | 6.6e-01 | 6.0 | 6.6 | 4.0e-11 | 0.81 | 0.10 | 0.50 | FALSE |
24 | GTEx | Brain Cerebellum | TMCO6 | 0.23 | 0.18 | enet | 14 | 0.22 | 3.3e-07 | 5.5 | 7.3 | 3.9e-13 | 0.77 | 0.16 | 0.84 | FALSE |
25 | GTEx | Brain Cerebellum | WDR55 | 0.10 | 0.00 | enet | 11 | 0.02 | 1.0e-01 | 6.4 | 7.5 | 7.8e-14 | 0.82 | 0.08 | 0.74 | FALSE |
26 | GTEx | Brain Cerebellum | HARS | 0.11 | 0.17 | enet | 19 | 0.12 | 1.6e-04 | 7.0 | -7.3 | 3.0e-13 | -0.97 | 0.03 | 0.95 | FALSE |
27 | GTEx | Brain Hippocampus | TMCO6 | 0.19 | 0.04 | lasso | 4 | 0.03 | 6.7e-02 | 3.0 | 5.5 | 4.7e-08 | 0.49 | 0.10 | 0.22 | FALSE |
28 | GTEx | Brain Hypothalamus | HARS | 0.14 | -0.01 | enet | 15 | -0.01 | 6.3e-01 | -5.4 | -5.4 | 7.0e-08 | -0.71 | 0.06 | 0.43 | FALSE |
29 | GTEx | Breast Mammary Tissue | TMCO6 | 0.08 | 0.05 | lasso | 4 | 0.08 | 1.0e-04 | 7.1 | 6.3 | 2.4e-10 | 0.93 | 0.04 | 0.94 | FALSE |
30 | GTEx | Breast Mammary Tissue | IK | 0.07 | 0.06 | lasso | 8 | 0.06 | 3.5e-04 | 7.1 | 7.2 | 7.9e-13 | 0.97 | 0.04 | 0.96 | FALSE |
31 | GTEx | Breast Mammary Tissue (Male) | PFDN1 | 0.24 | 0.04 | lasso | 9 | 0.09 | 4.0e-03 | 6.0 | -5.6 | 2.0e-08 | -0.53 | 0.20 | 0.06 | FALSE |
32 | GTEx | Breast Mammary Tissue (Male) | TMCO6 | 0.12 | -0.01 | lasso | 2 | -0.01 | 4.9e-01 | 5.4 | 6.4 | 1.9e-10 | 0.59 | 0.04 | 0.14 | FALSE |
33 | GTEx | Cells EBV-transformed lymphocytes | DNAJC18 | 0.26 | 0.09 | lasso | 2 | 0.12 | 9.7e-05 | -5.9 | -6.1 | 7.8e-10 | -0.05 | 0.00 | 0.98 | FALSE |
34 | GTEx | Cells Transformed fibroblasts | HARS2 | 0.04 | 0.01 | enet | 15 | 0.02 | 1.1e-02 | -4.4 | 5.4 | 5.1e-08 | 0.82 | 0.08 | 0.82 | FALSE |
35 | GTEx | Cells Transformed fibroblasts | TMCO6 | 0.11 | 0.11 | lasso | 6 | 0.11 | 1.8e-08 | 5.8 | 6.9 | 5.0e-12 | 0.79 | 0.29 | 0.71 | FALSE |
36 | GTEx | Cells Transformed fibroblasts | IK | 0.07 | 0.04 | lasso | 4 | 0.02 | 1.0e-02 | 6.6 | 7.0 | 3.0e-12 | 0.91 | 0.06 | 0.94 | FALSE |
37 | GTEx | Cells Transformed fibroblasts | WDR55 | 0.05 | 0.08 | lasso | 13 | 0.07 | 4.0e-06 | 7.1 | 7.3 | 3.2e-13 | 0.92 | 0.04 | 0.96 | FALSE |
38 | GTEx | Cells Transformed fibroblasts | ZMAT2 | 0.04 | 0.02 | lasso | 4 | 0.02 | 2.4e-02 | 6.6 | 6.4 | 1.6e-10 | 0.87 | 0.10 | 0.78 | FALSE |
39 | GTEx | Cells Transformed fibroblasts | DNAJC18 | 0.28 | 0.14 | lasso | 5 | 0.11 | 1.4e-08 | -5.9 | -6.0 | 1.6e-09 | -0.05 | 0.00 | 1.00 | FALSE |
40 | GTEx | Cells Transformed fibroblasts | SRA1 | 0.27 | 0.22 | lasso | 7 | 0.29 | 2.8e-22 | -3.1 | 5.7 | 1.2e-08 | 0.77 | 0.76 | 0.24 | FALSE |
41 | GTEx | Colon Transverse | TMCO6 | 0.15 | 0.06 | enet | 16 | 0.05 | 1.4e-03 | -5.0 | 6.2 | 5.0e-10 | 0.79 | 0.19 | 0.48 | FALSE |
42 | GTEx | Esophagus Gastroesophageal Junction | DNAJC18 | 0.17 | 0.01 | lasso | 10 | 0.04 | 2.0e-02 | -5.9 | -6.0 | 2.1e-09 | 0.00 | 0.03 | 0.82 | FALSE |
43 | GTEx | Esophagus Mucosa | TMCO6 | 0.04 | 0.02 | lasso | 4 | 0.01 | 6.1e-02 | 5.5 | 6.9 | 5.4e-12 | 0.78 | 0.08 | 0.76 | FALSE |
44 | GTEx | Esophagus Mucosa | ZMAT2 | 0.06 | 0.02 | enet | 16 | 0.02 | 1.1e-02 | -5.4 | 6.4 | 1.1e-10 | 0.76 | 0.15 | 0.66 | FALSE |
45 | GTEx | Esophagus Mucosa | DNAJC18 | 0.22 | 0.17 | lasso | 2 | 0.16 | 5.1e-11 | -5.9 | -5.5 | 3.8e-08 | -0.05 | 0.00 | 1.00 | FALSE |
46 | GTEx | Esophagus Mucosa | SPATA24 | 0.06 | 0.03 | lasso | 4 | 0.02 | 8.9e-03 | -5.2 | -5.4 | 6.7e-08 | -0.05 | 0.03 | 0.81 | FALSE |
47 | GTEx | Esophagus Muscularis | IK | 0.04 | 0.05 | enet | 16 | 0.01 | 4.7e-02 | 6.5 | 5.5 | 3.2e-08 | 0.75 | 0.10 | 0.77 | FALSE |
48 | GTEx | Esophagus Muscularis | WDR55 | 0.05 | 0.01 | lasso | 4 | 0.03 | 6.6e-03 | 6.7 | 7.0 | 2.3e-12 | 0.87 | 0.08 | 0.75 | FALSE |
49 | GTEx | Esophagus Muscularis | TMEM173 | 0.24 | 0.00 | lasso | 6 | 0.06 | 1.5e-04 | -5.4 | 5.2 | 2.5e-07 | -0.01 | 0.01 | 0.99 | FALSE |
50 | GTEx | Heart Atrial Appendage | DNAJC18 | 0.31 | 0.28 | lasso | 3 | 0.25 | 1.3e-11 | -5.9 | -5.6 | 1.7e-08 | -0.06 | 0.00 | 1.00 | FALSE |
51 | GTEx | Heart Left Ventricle | TMCO6 | 0.05 | 0.01 | lasso | 5 | 0.00 | 6.2e-01 | 6.7 | 5.2 | 2.0e-07 | 0.79 | 0.16 | 0.38 | FALSE |
52 | GTEx | Heart Left Ventricle | PCDHB5 | 0.11 | 0.05 | lasso | 3 | 0.06 | 5.3e-04 | -4.2 | -6.4 | 1.3e-10 | -0.69 | 0.17 | 0.42 | FALSE |
53 | GTEx | Heart Left Ventricle | DNAJC18 | 0.18 | 0.16 | enet | 4 | 0.19 | 2.2e-10 | -5.9 | -5.6 | 1.9e-08 | -0.04 | 0.01 | 0.99 | FALSE |
54 | GTEx | Lung | TMCO6 | 0.06 | 0.03 | lasso | 3 | 0.03 | 1.1e-03 | 5.5 | 7.0 | 3.0e-12 | 0.78 | 0.15 | 0.81 | FALSE |
55 | GTEx | Lung | WDR55 | 0.08 | 0.00 | enet | 17 | 0.03 | 1.1e-03 | 2.4 | 5.5 | 2.9e-08 | 0.44 | 0.16 | 0.22 | FALSE |
56 | GTEx | Lung | PROB1 | 0.15 | 0.12 | lasso | 11 | 0.10 | 2.2e-08 | -5.9 | 5.7 | 1.0e-08 | 0.04 | 0.00 | 1.00 | FALSE |
57 | GTEx | Muscle Skeletal | DNAJC18 | 0.44 | 0.33 | lasso | 7 | 0.34 | 5.5e-34 | -5.9 | -5.9 | 3.4e-09 | -0.05 | 0.00 | 1.00 | FALSE |
58 | GTEx | Nerve Tibial | TMCO6 | 0.22 | 0.20 | enet | 12 | 0.20 | 2.7e-14 | 5.5 | 6.9 | 4.0e-12 | 0.78 | 0.77 | 0.23 | FALSE |
59 | GTEx | Nerve Tibial | IK | 0.08 | 0.08 | lasso | 8 | 0.06 | 8.3e-05 | 7.3 | 7.1 | 9.6e-13 | 0.95 | 0.02 | 0.98 | FALSE |
60 | GTEx | Nerve Tibial | WDR55 | 0.05 | 0.01 | enet | 8 | 0.04 | 7.5e-04 | 1.4 | 5.6 | 1.8e-08 | 0.61 | 0.10 | 0.71 | FALSE |
61 | GTEx | Nerve Tibial | HARS | 0.07 | 0.01 | enet | 16 | 0.04 | 1.1e-03 | 6.6 | -5.7 | 1.0e-08 | -0.81 | 0.05 | 0.92 | FALSE |
62 | GTEx | Nerve Tibial | PROB1 | 0.08 | 0.08 | lasso | 2 | 0.08 | 3.7e-06 | -5.9 | 5.4 | 8.3e-08 | 0.06 | 0.00 | 0.99 | FALSE |
63 | GTEx | Ovary | TMCO6 | 0.27 | 0.22 | lasso | 4 | 0.19 | 2.5e-05 | 5.2 | 5.9 | 4.5e-09 | 0.57 | 0.16 | 0.30 | FALSE |
64 | GTEx | Ovary | DNAJC18 | 0.33 | 0.24 | lasso | 3 | 0.21 | 7.1e-06 | -5.9 | -5.9 | 3.2e-09 | -0.06 | 0.00 | 0.94 | FALSE |
65 | GTEx | Pancreas | DNAJC18 | 0.42 | 0.32 | lasso | 2 | 0.28 | 1.7e-12 | -5.9 | -5.8 | 5.0e-09 | -0.06 | 0.00 | 1.00 | FALSE |
66 | GTEx | Skin Not Sun Exposed Suprapubic | IK | 0.08 | 0.05 | lasso | 14 | 0.04 | 3.0e-03 | 7.1 | 6.4 | 1.9e-10 | 0.93 | 0.04 | 0.94 | FALSE |
67 | GTEx | Skin Sun Exposed Lower leg | IK | 0.20 | 0.07 | enet | 44 | 0.05 | 1.1e-04 | 7.0 | 5.6 | 2.5e-08 | 0.72 | 0.02 | 0.98 | FALSE |
68 | GTEx | Skin Sun Exposed Lower leg | WDR55 | 0.04 | 0.01 | enet | 10 | 0.01 | 2.8e-02 | 7.1 | 6.8 | 8.8e-12 | 0.90 | 0.02 | 0.95 | FALSE |
69 | GTEx | Skin Sun Exposed Lower leg | ZMAT2 | 0.12 | 0.12 | enet | 22 | 0.15 | 1.7e-12 | 6.6 | 7.2 | 6.5e-13 | 0.91 | 0.05 | 0.95 | FALSE |
70 | GTEx | Skin Sun Exposed Lower leg | DNAJC18 | 0.09 | 0.06 | enet | 5 | 0.06 | 1.7e-05 | -5.9 | -5.6 | 2.4e-08 | -0.06 | 0.00 | 0.99 | FALSE |
71 | GTEx | Skin Sun Exposed Lower leg | SRA1 | 0.05 | 0.04 | lasso | 3 | 0.06 | 1.0e-05 | 5.7 | 7.3 | 3.5e-13 | 0.78 | 0.12 | 0.84 | FALSE |
72 | GTEx | Spleen | DNAJC18 | 0.30 | 0.13 | lasso | 5 | 0.20 | 6.5e-06 | -5.9 | -6.4 | 1.4e-10 | -0.04 | 0.01 | 0.97 | TRUE |
73 | GTEx | Testis | ZMAT2 | 0.09 | 0.12 | lasso | 1 | 0.10 | 2.1e-05 | 7.1 | 7.1 | 9.7e-13 | 0.99 | 0.03 | 0.97 | FALSE |
74 | GTEx | Testis | SRA1 | 0.16 | 0.02 | lasso | 7 | 0.06 | 1.6e-03 | 5.2 | 5.6 | 2.2e-08 | 0.60 | 0.19 | 0.36 | FALSE |
75 | GTEx | Thyroid | TMCO6 | 0.22 | 0.22 | lasso | 6 | 0.22 | 1.6e-16 | 5.4 | 6.0 | 2.1e-09 | 0.64 | 1.00 | 0.00 | FALSE |
76 | GTEx | Thyroid | DNAJC18 | 0.38 | 0.26 | lasso | 4 | 0.26 | 1.5e-19 | -5.9 | -5.8 | 8.2e-09 | -0.06 | 0.00 | 1.00 | FALSE |
77 | GTEx | Vagina | IK | 0.27 | 0.09 | enet | 29 | 0.15 | 2.4e-04 | 6.2 | 6.5 | 8.6e-11 | 0.80 | 0.07 | 0.90 | FALSE |
78 | METSIM | Adipose | DND1 | 0.08 | 0.11 | lasso | 5 | 0.10 | 7.3e-15 | 6.4 | -6.2 | 4.1e-10 | -0.88 | 0.11 | 0.89 | FALSE |
79 | METSIM | Adipose | IK | 0.13 | 0.09 | enet | 17 | 0.12 | 1.2e-17 | 1.6 | 5.2 | 1.7e-07 | 0.66 | 0.85 | 0.15 | FALSE |
80 | METSIM | Adipose | PROB1 | 0.04 | 0.02 | enet | 23 | 0.02 | 2.9e-04 | -4.8 | 5.5 | 4.6e-08 | 0.01 | 0.06 | 0.93 | FALSE |
81 | METSIM | Adipose | TMCO6 | 0.10 | 0.08 | lasso | 8 | 0.11 | 7.0e-16 | 5.2 | 6.1 | 1.0e-09 | 0.65 | 0.99 | 0.01 | FALSE |
82 | NTR | Blood | SRA1 | 0.10 | 0.15 | enet | 22 | 0.15 | 5.7e-47 | -5.0 | 5.4 | 6.8e-08 | 0.75 | 1.00 | 0.00 | FALSE |
83 | ROSMAP | Brain Pre-frontal Cortex | TMCO6 | 0.07 | 0.04 | blup | 202 | 0.05 | 5.8e-07 | 5.7 | 7.1 | 1.1e-12 | 0.73 | 0.08 | 0.92 | FALSE |
84 | ROSMAP | Brain Pre-frontal Cortex | PCDHB7 | 0.04 | 0.01 | enet | 14 | 0.02 | 1.5e-03 | 6.2 | 5.8 | 5.5e-09 | 0.53 | 0.14 | 0.16 | FALSE |
85 | ROSMAP | Brain Pre-frontal Cortex | NDUFA2 | 0.09 | 0.12 | enet | 22 | 0.12 | 1.3e-15 | 7.1 | -7.6 | 2.0e-14 | -0.92 | 0.02 | 0.98 | FALSE |
86 | ROSMAP | Brain Pre-frontal Cortex | ZMAT2 | 0.03 | 0.02 | bslmm | 185 | 0.02 | 6.5e-04 | 7.0 | 7.0 | 3.0e-12 | 0.82 | 0.04 | 0.95 | FALSE |
87 | ROSMAP | Brain Pre-frontal Cortex | DNAJC18 | 0.08 | 0.10 | lasso | 3 | 0.09 | 2.2e-11 | -5.9 | -5.8 | 5.1e-09 | -0.05 | 0.00 | 1.00 | FALSE |
88 | ROSMAP | Brain Pre-frontal Cortex | PCDHB13 | 0.03 | 0.02 | lasso | 3 | 0.02 | 7.1e-04 | 6.9 | -6.8 | 1.1e-11 | -0.90 | 0.01 | 0.91 | FALSE |
89 | ROSMAP | Brain Pre-frontal Cortex | SPRY4 | 0.10 | 0.07 | lasso | 4 | 0.07 | 2.1e-09 | -4.4 | -5.7 | 1.5e-08 | 0.07 | 0.28 | 0.71 | TRUE |
90 | ROSMAP | Brain Pre-frontal Cortex | PCDHA8 | 0.04 | 0.03 | enet | 4 | 0.03 | 3.4e-05 | 6.9 | 6.5 | 7.1e-11 | 0.89 | 0.04 | 0.96 | FALSE |
91 | ROSMAP | Brain Pre-frontal Cortex | SRA1 | 0.08 | 0.09 | enet | 10 | 0.08 | 5.7e-11 | 5.8 | 5.7 | 1.0e-08 | 0.54 | 1.00 | 0.00 | FALSE |
92 | ROSMAP | Brain Pre-frontal Cortex | PROB1 | 0.12 | 0.09 | lasso | 6 | 0.10 | 7.7e-13 | -5.9 | 5.8 | 7.7e-09 | 0.03 | 0.01 | 0.99 | FALSE |
93 | ROSMAP | Brain Pre-frontal Cortex | AC005609.1 | 0.07 | 0.05 | enet | 11 | 0.04 | 1.7e-05 | 6.2 | -6.2 | 6.5e-10 | -0.66 | 0.48 | 0.50 | FALSE |
94 | ROSMAP | Brain Pre-frontal Cortex | PCDHA10 | 0.48 | 0.17 | enet | 37 | 0.27 | 3.4e-35 | 6.0 | 7.1 | 1.1e-12 | 0.59 | 0.93 | 0.07 | FALSE |
95 | YFS | Blood | APBB3 | 0.01 | 0.00 | bslmm | 318 | 0.00 | 2.7e-02 | 5.4 | -5.8 | 6.4e-09 | -0.72 | 0.16 | 0.25 | FALSE |
96 | YFS | Blood | IK | 0.07 | 0.05 | blup | 334 | 0.06 | 7.1e-18 | 7.3 | 6.8 | 9.4e-12 | 0.79 | 0.01 | 0.99 | FALSE |
97 | YFS | Blood | NDUFA2 | 0.08 | 0.11 | lasso | 6 | 0.11 | 2.0e-33 | 7.3 | -7.4 | 1.4e-13 | -0.99 | 0.01 | 0.99 | FALSE |
98 | YFS | Blood | TMCO6 | 0.01 | 0.00 | blup | 329 | 0.01 | 4.1e-03 | 6.9 | 6.2 | 5.5e-10 | 0.87 | 0.06 | 0.92 | FALSE |
99 | YFS | Blood | WDR55 | 0.15 | 0.21 | bslmm | 337 | 0.21 | 8.6e-67 | 7.1 | 7.0 | 2.2e-12 | 0.93 | 0.05 | 0.95 | FALSE |
100 | YFS | Blood | ZMAT2 | 0.04 | 0.04 | enet | 12 | 0.04 | 1.4e-13 | 5.8 | 6.8 | 7.8e-12 | 0.79 | 0.94 | 0.06 | FALSE |
101 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | DNAJC18 | 0.03 | 0.02 | blup | 22 | 0.02 | 6.9e-03 | -5.9 | -5.6 | 2.7e-08 | -0.02 | 0.01 | 0.81 | FALSE |
102 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | NDUFA2 | 0.07 | 0.04 | blup | 41 | 0.03 | 1.8e-03 | 7.1 | -7.7 | 1.7e-14 | -0.90 | 0.02 | 0.97 | TRUE |
103 | The Cancer Genome Atlas | Breast Invasive Carcinoma | CD14 | 0.01 | 0.01 | blup | 38 | 0.00 | 3.5e-02 | -5.4 | 5.1 | 3.0e-07 | 0.84 | 0.02 | 0.37 | FALSE |
104 | The Cancer Genome Atlas | Breast Invasive Carcinoma | DNAJC18 | 0.09 | 0.06 | lasso | 5 | 0.05 | 1.1e-10 | -5.9 | -5.3 | 1.0e-07 | -0.07 | 0.00 | 1.00 | FALSE |
105 | The Cancer Genome Atlas | Breast Invasive Carcinoma | MGC29506 | 0.01 | 0.00 | blup | 24 | 0.00 | 3.6e-02 | -5.9 | 5.4 | 7.5e-08 | 0.01 | 0.01 | 0.56 | FALSE |
106 | The Cancer Genome Atlas | Breast Invasive Carcinoma | PCDHA10 | 0.08 | 0.01 | blup | 29 | 0.03 | 3.6e-06 | 6.2 | 6.7 | 2.3e-11 | 0.50 | 0.01 | 0.96 | FALSE |
107 | The Cancer Genome Atlas | Breast Invasive Carcinoma | PCDHA11 | 0.03 | 0.01 | blup | 29 | 0.01 | 1.5e-02 | -5.2 | -5.6 | 2.0e-08 | -0.33 | 0.02 | 0.11 | FALSE |
108 | The Cancer Genome Atlas | Breast Invasive Carcinoma | PCDHA4 | 0.01 | 0.02 | lasso | 1 | 0.01 | 4.9e-04 | 6.6 | 6.6 | 4.4e-11 | 0.87 | 0.00 | 0.97 | FALSE |
109 | The Cancer Genome Atlas | Breast Invasive Carcinoma | WDR55 | 0.10 | 0.03 | enet | 8 | 0.04 | 3.3e-09 | 7.0 | 6.1 | 1.1e-09 | 0.75 | 0.04 | 0.96 | FALSE |
110 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | DNAJC18 | 0.06 | 0.05 | lasso | 2 | 0.04 | 7.3e-03 | -5.9 | -5.9 | 4.0e-09 | -0.05 | 0.01 | 0.77 | FALSE |
111 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | WDR55 | 0.04 | 0.04 | blup | 44 | 0.03 | 8.2e-03 | 7.0 | 7.0 | 2.4e-12 | 0.96 | 0.02 | 0.76 | FALSE |
112 | The Cancer Genome Atlas | Colon Adenocarcinoma | DNAJC18 | 0.14 | 0.12 | lasso | 2 | 0.11 | 7.3e-07 | -5.9 | -5.9 | 4.7e-09 | -0.05 | 0.00 | 1.00 | FALSE |
113 | The Cancer Genome Atlas | Colon Adenocarcinoma | WDR55 | 0.09 | 0.08 | enet | 12 | 0.12 | 1.5e-07 | 7.1 | 5.3 | 1.1e-07 | 0.83 | 0.02 | 0.97 | FALSE |
114 | The Cancer Genome Atlas | Esophageal Carcinoma | SPATA24 | 0.08 | 0.08 | blup | 25 | 0.08 | 1.5e-03 | -4.9 | -5.2 | 1.5e-07 | -0.01 | 0.02 | 0.81 | FALSE |
115 | The Cancer Genome Atlas | Glioblastoma Multiforme | PCDHA10 | 0.17 | 0.05 | blup | 29 | 0.05 | 1.4e-02 | -5.4 | 6.7 | 1.9e-11 | 0.51 | 0.01 | 0.31 | FALSE |
116 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | DNAJC18 | 0.10 | 0.07 | blup | 24 | 0.07 | 2.3e-08 | -5.9 | -6.2 | 6.4e-10 | -0.02 | 0.00 | 1.00 | FALSE |
117 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | NDUFA2 | 0.04 | 0.07 | lasso | 1 | 0.06 | 1.5e-07 | 7.1 | -7.1 | 1.6e-12 | -0.95 | 0.02 | 0.98 | FALSE |
118 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PCDHA10 | 0.16 | 0.05 | blup | 29 | 0.04 | 1.8e-05 | -5.2 | 5.7 | 9.8e-09 | 0.34 | 0.56 | 0.34 | FALSE |
119 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PCDHA4 | 0.03 | 0.01 | blup | 31 | 0.01 | 3.3e-02 | 6.6 | 6.9 | 5.8e-12 | 0.77 | 0.00 | 0.79 | FALSE |
120 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | UBE2D2 | 0.05 | 0.02 | enet | 6 | 0.03 | 4.4e-04 | -5.4 | -5.5 | 4.1e-08 | 0.00 | 0.01 | 0.97 | FALSE |
121 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PCDHA10 | 0.41 | 0.02 | enet | 19 | 0.08 | 1.7e-09 | 6.2 | 6.4 | 1.2e-10 | 0.44 | 0.01 | 0.95 | FALSE |
122 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PCDHA6 | 0.04 | 0.00 | blup | 29 | 0.01 | 1.0e-02 | 6.2 | -6.5 | 5.9e-11 | -0.59 | 0.01 | 0.54 | FALSE |
123 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PCDHB9 | 0.04 | 0.04 | lasso | 5 | 0.03 | 1.8e-04 | 6.2 | -6.3 | 2.8e-10 | -0.66 | 0.01 | 0.98 | FALSE |
124 | The Cancer Genome Atlas | Brain Lower Grade Glioma | WDR55 | 0.09 | 0.03 | lasso | 4 | 0.05 | 1.5e-06 | 7.3 | 5.9 | 4.7e-09 | 0.86 | 0.03 | 0.96 | FALSE |
125 | The Cancer Genome Atlas | Lung Adenocarcinoma | DNAJC18 | 0.09 | 0.10 | lasso | 3 | 0.09 | 1.9e-10 | -5.9 | -5.9 | 3.2e-09 | -0.05 | 0.00 | 1.00 | FALSE |
126 | The Cancer Genome Atlas | Lung Adenocarcinoma | LOC389333 | 0.02 | 0.02 | blup | 24 | 0.02 | 4.8e-03 | -5.9 | 5.4 | 5.6e-08 | 0.02 | 0.01 | 0.86 | FALSE |
127 | The Cancer Genome Atlas | Lung Adenocarcinoma | NDUFA2 | 0.07 | 0.04 | enet | 4 | 0.04 | 3.6e-05 | 7.3 | -6.9 | 5.0e-12 | -0.87 | 0.01 | 0.98 | FALSE |
128 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | DNAJC18 | 0.06 | 0.03 | enet | 5 | 0.03 | 1.3e-04 | -5.9 | -5.8 | 5.2e-09 | -0.07 | 0.00 | 0.98 | FALSE |
129 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | PCDHA10 | 0.05 | 0.01 | lasso | 2 | 0.00 | 1.1e-01 | -5.4 | 5.2 | 1.8e-07 | 0.31 | 0.02 | 0.06 | FALSE |
130 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | SPATA24 | 0.02 | 0.02 | enet | 2 | 0.01 | 1.2e-02 | -5.4 | -5.3 | 1.2e-07 | -0.04 | 0.01 | 0.71 | FALSE |
131 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | WDR55 | 0.02 | 0.02 | lasso | 2 | 0.02 | 2.3e-03 | 7.3 | 7.3 | 4.1e-13 | 0.96 | 0.02 | 0.92 | FALSE |
132 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | DNAJC18 | 0.06 | 0.02 | blup | 23 | 0.02 | 9.5e-03 | -5.9 | -5.5 | 4.7e-08 | -0.02 | 0.01 | 0.84 | FALSE |
133 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | NDUFA2 | 0.03 | 0.02 | blup | 42 | 0.04 | 1.1e-03 | -5.0 | -6.1 | 8.1e-10 | -0.92 | 0.02 | 0.80 | FALSE |
134 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | PCDHA10 | 0.19 | 0.08 | lasso | 2 | 0.08 | 6.0e-06 | -5.4 | 5.4 | 7.4e-08 | 0.31 | 0.28 | 0.36 | FALSE |
135 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | PCDHA9 | 0.10 | 0.04 | blup | 29 | 0.04 | 1.5e-03 | -5.2 | 5.8 | 5.6e-09 | 0.31 | 0.03 | 0.12 | FALSE |
136 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | WDR55 | 0.11 | 0.09 | lasso | 6 | 0.07 | 1.4e-05 | 7.0 | 7.3 | 3.7e-13 | 0.94 | 0.03 | 0.97 | FALSE |
137 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | DNAJC18 | 0.07 | 0.09 | blup | 24 | 0.09 | 1.9e-04 | -5.9 | -5.6 | 2.7e-08 | -0.02 | 0.01 | 0.98 | FALSE |
138 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | NDUFA2 | 0.10 | 0.04 | blup | 43 | 0.06 | 1.4e-03 | 7.1 | -7.4 | 1.0e-13 | -0.91 | 0.02 | 0.89 | FALSE |
139 | The Cancer Genome Atlas | Prostate Adenocarcinoma | DNAJC18 | 0.24 | 0.19 | enet | 13 | 0.21 | 1.1e-21 | -5.9 | -5.7 | 1.6e-08 | -0.07 | 0.00 | 1.00 | FALSE |
140 | The Cancer Genome Atlas | Prostate Adenocarcinoma | NDUFA2 | 0.03 | 0.02 | blup | 41 | 0.03 | 4.6e-04 | 7.1 | -7.4 | 2.0e-13 | -0.87 | 0.02 | 0.90 | FALSE |
141 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SLC23A1 | 0.09 | 0.15 | lasso | 3 | 0.14 | 7.9e-15 | -5.0 | -5.3 | 1.2e-07 | -0.04 | 0.02 | 0.98 | FALSE |
142 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SPATA24 | 0.02 | 0.03 | blup | 25 | 0.03 | 3.2e-04 | -5.1 | -5.4 | 8.6e-08 | -0.02 | 0.03 | 0.89 | FALSE |
143 | The Cancer Genome Atlas | Prostate Adenocarcinoma | WDR55 | 0.07 | 0.06 | blup | 44 | 0.06 | 1.7e-06 | 7.0 | 6.4 | 1.3e-10 | 0.93 | 0.03 | 0.97 | FALSE |
144 | The Cancer Genome Atlas | Prostate Adenocarcinoma | ZMAT2 | 0.03 | 0.03 | enet | 6 | 0.04 | 1.3e-04 | 7.0 | 5.8 | 7.5e-09 | 0.87 | 0.02 | 0.90 | FALSE |
145 | The Cancer Genome Atlas | Rectum Adenocarcinoma | DNAJC18 | 0.35 | 0.07 | blup | 22 | 0.06 | 1.4e-02 | -5.9 | -5.6 | 2.4e-08 | -0.03 | 0.01 | 0.48 | FALSE |
146 | The Cancer Genome Atlas | Soft Tissue Sarcoma | WDR55 | 0.07 | 0.08 | lasso | 5 | 0.08 | 1.8e-05 | 7.0 | 6.6 | 5.6e-11 | 0.92 | 0.03 | 0.95 | FALSE |
147 | The Cancer Genome Atlas | Stomach Adenocarcinoma | PCDHA10 | 0.07 | 0.01 | blup | 29 | 0.02 | 1.4e-02 | 6.2 | 7.0 | 2.8e-12 | 0.57 | 0.01 | 0.60 | FALSE |
148 | The Cancer Genome Atlas | Stomach Adenocarcinoma | PCDHA4 | 0.03 | 0.01 | blup | 31 | 0.02 | 2.0e-02 | 6.2 | 5.9 | 3.6e-09 | 0.71 | 0.01 | 0.68 | FALSE |
149 | The Cancer Genome Atlas | Stomach Adenocarcinoma | SPATA24 | 0.03 | 0.02 | blup | 23 | 0.02 | 1.1e-02 | -4.8 | -5.3 | 1.3e-07 | -0.01 | 0.02 | 0.52 | FALSE |
150 | The Cancer Genome Atlas | Stomach Adenocarcinoma | WDR55 | 0.04 | 0.01 | blup | 45 | 0.03 | 3.7e-03 | -5.4 | 6.0 | 2.1e-09 | 0.91 | 0.02 | 0.73 | FALSE |
151 | The Cancer Genome Atlas | Thyroid Carcinoma | DNAJC18 | 0.08 | 0.10 | blup | 23 | 0.10 | 3.7e-10 | -5.0 | -5.5 | 3.6e-08 | -0.03 | 0.01 | 0.99 | FALSE |
152 | The Cancer Genome Atlas | Thyroid Carcinoma | NDUFA2 | 0.03 | 0.01 | blup | 41 | 0.03 | 8.3e-04 | 7.3 | -7.6 | 3.4e-14 | -0.94 | 0.01 | 0.90 | FALSE |
153 | The Cancer Genome Atlas | Thyroid Carcinoma | PCDHA9 | 0.15 | 0.01 | enet | 7 | 0.02 | 6.2e-03 | -5.2 | 5.4 | 5.5e-08 | 0.45 | 0.01 | 0.25 | FALSE |
154 | The Cancer Genome Atlas | Thyroid Carcinoma | WDR55 | 0.25 | 0.12 | lasso | 5 | 0.12 | 7.0e-12 | 7.2 | 6.7 | 1.9e-11 | 0.93 | 0.02 | 0.98 | FALSE |
155 | The Cancer Genome Atlas | Thyroid Carcinoma | ZMAT2 | 0.03 | 0.02 | blup | 38 | 0.03 | 9.6e-04 | 7.1 | 7.2 | 5.5e-13 | 0.92 | 0.02 | 0.94 | FALSE |