Best TWAS P=3.53e-21 · Best GWAS P=2.14e-17 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | GLT8D1 | 0.07 | 0.10 | lasso | 1 | 0.09 | 5.2e-11 | -6.6 | -6.6 | 4.5e-11 | -0.11 | 1.00 | 0.00 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | ITIH4 | 0.22 | 0.21 | lasso | 8 | 0.21 | 7.0e-25 | -4.6 | -5.2 | 1.5e-07 | -0.36 | 1.00 | 0.00 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | NEK4 | 0.07 | 0.11 | enet | 69 | 0.11 | 1.0e-13 | -6.5 | 5.6 | 2.3e-08 | 0.11 | 1.00 | 0.00 | FALSE |
4 | CommonMind | Brain Pre-frontal Cortex | RFT1 | 0.21 | 0.22 | lasso | 3 | 0.22 | 5.7e-26 | 8.3 | 8.5 | 1.5e-17 | 0.87 | 0.02 | 0.98 | FALSE |
5 | CommonMind | Brain Pre-frontal Cortex | SFMBT1 | 0.13 | 0.10 | enet | 23 | 0.12 | 4.4e-14 | -5.4 | -7.0 | 2.6e-12 | -0.58 | 1.00 | 0.00 | FALSE |
6 | CommonMind | Brain Pre-frontal Cortex | TMEM110 | 0.07 | 0.07 | lasso | 4 | 0.07 | 8.9e-09 | -5.2 | -5.4 | 7.1e-08 | -0.38 | 1.00 | 0.00 | FALSE |
7 | GTEx | Adipose Subcutaneous | NEK4 | 0.04 | 0.01 | lasso | 3 | 0.00 | 1.2e-01 | -6.6 | 6.4 | 1.9e-10 | 0.11 | 0.67 | 0.02 | FALSE |
8 | GTEx | Adipose Subcutaneous | RFT1 | 0.21 | 0.19 | enet | 24 | 0.17 | 3.7e-14 | 8.4 | 8.0 | 1.2e-15 | 0.86 | 0.01 | 0.99 | FALSE |
9 | GTEx | Adipose Subcutaneous | SFMBT1 | 0.10 | 0.02 | lasso | 7 | 0.03 | 2.9e-03 | 5.1 | -5.6 | 2.3e-08 | -0.76 | 0.12 | 0.80 | FALSE |
10 | GTEx | Adipose Subcutaneous | GNL3 | 0.04 | 0.05 | enet | 28 | 0.04 | 2.4e-04 | -5.5 | 6.0 | 1.6e-09 | 0.09 | 0.70 | 0.02 | FALSE |
11 | GTEx | Adipose Visceral Omentum | NEK4 | 0.10 | 0.09 | lasso | 3 | 0.08 | 5.0e-05 | -6.6 | 6.7 | 2.5e-11 | 0.10 | 0.93 | 0.01 | FALSE |
12 | GTEx | Adipose Visceral Omentum | RFT1 | 0.16 | 0.15 | enet | 12 | 0.10 | 1.0e-05 | 8.3 | 8.1 | 6.1e-16 | 0.84 | 0.01 | 0.99 | FALSE |
13 | GTEx | Adrenal Gland | RFT1 | 0.15 | 0.02 | enet | 11 | 0.03 | 4.0e-02 | 8.3 | 8.7 | 4.2e-18 | 0.93 | 0.01 | 0.94 | FALSE |
14 | GTEx | Adrenal Gland | GLYCTK | 0.14 | 0.05 | enet | 20 | 0.06 | 4.8e-03 | 4.9 | 5.5 | 3.2e-08 | 0.09 | 0.11 | 0.25 | FALSE |
15 | GTEx | Adrenal Gland | GLYCTK-AS1 | 0.16 | 0.14 | lasso | 4 | 0.09 | 5.1e-04 | 4.9 | 5.3 | 1.4e-07 | 0.01 | 0.21 | 0.16 | FALSE |
16 | GTEx | Artery Aorta | RFT1 | 0.40 | 0.32 | lasso | 13 | 0.31 | 8.1e-18 | 8.4 | -8.2 | 1.6e-16 | -0.86 | 0.01 | 0.99 | FALSE |
17 | GTEx | Artery Aorta | SFMBT1 | 0.16 | 0.10 | enet | 19 | 0.08 | 2.3e-05 | 8.4 | -8.9 | 3.6e-19 | -0.84 | 0.01 | 0.99 | FALSE |
18 | GTEx | Artery Aorta | MUSTN1 | 0.15 | 0.14 | lasso | 6 | 0.11 | 9.5e-07 | -4.7 | -5.7 | 1.6e-08 | -0.35 | 1.00 | 0.00 | FALSE |
19 | GTEx | Artery Coronary | RFT1 | 0.38 | 0.33 | lasso | 5 | 0.34 | 2.6e-12 | 8.4 | 8.4 | 4.4e-17 | 0.88 | 0.01 | 0.99 | FALSE |
20 | GTEx | Artery Coronary | ITIH4-AS1 | 0.11 | 0.12 | enet | 20 | 0.16 | 5.5e-06 | -4.6 | -6.2 | 6.9e-10 | -0.26 | 0.70 | 0.04 | FALSE |
21 | GTEx | Artery Coronary | RP5-966M1.6 | 0.20 | 0.15 | lasso | 8 | 0.15 | 1.2e-05 | -4.9 | -5.3 | 1.4e-07 | -0.32 | 0.90 | 0.02 | FALSE |
22 | GTEx | Artery Tibial | RFT1 | 0.40 | 0.38 | enet | 22 | 0.40 | 8.2e-33 | 8.4 | 8.0 | 1.9e-15 | 0.86 | 0.01 | 0.99 | FALSE |
23 | GTEx | Artery Tibial | PBRM1 | 0.16 | 0.20 | enet | 35 | 0.21 | 4.8e-16 | -6.6 | -5.3 | 1.1e-07 | -0.07 | 1.00 | 0.00 | FALSE |
24 | GTEx | Artery Tibial | GLYCTK | 0.04 | 0.02 | enet | 4 | 0.01 | 4.9e-02 | 4.9 | 5.3 | 9.0e-08 | -0.01 | 0.08 | 0.75 | FALSE |
25 | GTEx | Brain Caudate basal ganglia | RFT1 | 0.30 | 0.23 | enet | 14 | 0.22 | 5.4e-07 | 8.3 | 7.9 | 2.6e-15 | 0.79 | 0.01 | 0.98 | FALSE |
26 | GTEx | Brain Cerebellar Hemisphere | RFT1 | 0.36 | 0.34 | enet | 19 | 0.33 | 2.4e-09 | 8.4 | 7.4 | 1.7e-13 | 0.86 | 0.01 | 0.99 | FALSE |
27 | GTEx | Brain Cerebellar Hemisphere | GNL3 | 0.13 | 0.19 | enet | 16 | 0.10 | 1.6e-03 | -6.6 | 6.2 | 5.2e-10 | 0.07 | 0.71 | 0.02 | FALSE |
28 | GTEx | Brain Cerebellum | RFT1 | 0.72 | 0.60 | enet | 20 | 0.64 | 2.3e-24 | 8.3 | 7.4 | 1.8e-13 | 0.85 | 0.01 | 0.99 | FALSE |
29 | GTEx | Brain Cerebellum | GNL3 | 0.14 | 0.07 | enet | 43 | 0.09 | 1.3e-03 | -6.5 | 5.2 | 1.7e-07 | 0.13 | 0.63 | 0.02 | FALSE |
30 | GTEx | Brain Cortex | RFT1 | 0.31 | 0.17 | enet | 14 | 0.30 | 5.9e-09 | 8.3 | 8.0 | 8.9e-16 | 0.77 | 0.02 | 0.98 | FALSE |
31 | GTEx | Brain Frontal Cortex BA9 | RFT1 | 0.23 | 0.10 | enet | 17 | 0.10 | 1.4e-03 | 8.4 | 7.6 | 3.8e-14 | 0.85 | 0.01 | 0.95 | FALSE |
32 | GTEx | Brain Hippocampus | GLYCTK | 0.17 | 0.16 | lasso | 7 | 0.10 | 2.6e-03 | -5.8 | 5.9 | 4.5e-09 | 0.14 | 0.10 | 0.63 | FALSE |
33 | GTEx | Brain Hippocampus | TMEM110 | 0.17 | 0.11 | lasso | 7 | 0.13 | 5.1e-04 | -6.0 | -5.8 | 8.1e-09 | -0.19 | 0.09 | 0.06 | FALSE |
34 | GTEx | Brain Hippocampus | GLYCTK-AS1 | 0.17 | 0.25 | lasso | 6 | 0.15 | 1.9e-04 | -6.1 | 5.9 | 4.5e-09 | 0.20 | 0.14 | 0.73 | TRUE |
35 | GTEx | Brain Nucleus accumbens basal ganglia | RFT1 | 0.26 | 0.16 | lasso | 4 | 0.10 | 1.1e-03 | 8.3 | 7.7 | 1.2e-14 | 0.87 | 0.01 | 0.94 | FALSE |
36 | GTEx | Brain Nucleus accumbens basal ganglia | TMEM110 | 0.13 | 0.07 | lasso | 3 | 0.05 | 1.5e-02 | -5.5 | -6.0 | 2.3e-09 | -0.28 | 0.13 | 0.16 | FALSE |
37 | GTEx | Brain Putamen basal ganglia | ITIH4-AS1 | 0.18 | 0.00 | enet | 23 | 0.06 | 1.8e-02 | -4.8 | -5.6 | 2.0e-08 | -0.37 | 0.10 | 0.14 | FALSE |
38 | GTEx | Breast Mammary Tissue | RFT1 | 0.24 | 0.14 | lasso | 8 | 0.15 | 3.1e-08 | 8.5 | 8.2 | 1.8e-16 | 0.99 | 0.00 | 1.00 | FALSE |
39 | GTEx | Breast Mammary Tissue (Male) | RFT1 | 0.23 | 0.12 | enet | 8 | 0.13 | 5.5e-04 | 8.3 | 8.6 | 8.5e-18 | 0.94 | 0.01 | 0.88 | FALSE |
40 | GTEx | Breast Mammary Tissue (Female) | RFT1 | 0.09 | 0.00 | enet | 15 | 0.00 | 2.8e-01 | 8.4 | 6.0 | 2.0e-09 | 0.82 | 0.02 | 0.55 | FALSE |
41 | GTEx | Cells Transformed fibroblasts | SPCS1 | 0.22 | 0.03 | lasso | 2 | 0.01 | 9.4e-02 | -5.8 | -5.7 | 9.6e-09 | -0.09 | 0.15 | 0.10 | FALSE |
42 | GTEx | Cells Transformed fibroblasts | RFT1 | 0.22 | 0.21 | enet | 16 | 0.22 | 2.8e-16 | 8.4 | 8.6 | 8.7e-18 | 0.94 | 0.01 | 0.99 | FALSE |
43 | GTEx | Cells Transformed fibroblasts | GNL3 | 0.10 | 0.12 | lasso | 8 | 0.10 | 3.0e-08 | -6.6 | 6.6 | 5.1e-11 | 0.11 | 1.00 | 0.00 | FALSE |
44 | GTEx | Cells Transformed fibroblasts | WDR82 | 0.05 | 0.02 | lasso | 5 | 0.02 | 1.8e-02 | -5.1 | -5.5 | 3.9e-08 | -0.10 | 0.09 | 0.77 | FALSE |
45 | GTEx | Colon Sigmoid | RFT1 | 0.55 | 0.45 | enet | 15 | 0.43 | 1.0e-16 | 8.3 | 8.2 | 1.5e-16 | 0.91 | 0.01 | 0.99 | FALSE |
46 | GTEx | Colon Sigmoid | GNL3 | 0.08 | 0.04 | lasso | 5 | 0.04 | 1.8e-02 | -6.6 | 6.6 | 3.8e-11 | 0.11 | 0.20 | 0.13 | FALSE |
47 | GTEx | Colon Transverse | RFT1 | 0.30 | 0.27 | enet | 16 | 0.24 | 8.0e-12 | 8.4 | 8.2 | 3.1e-16 | 0.85 | 0.01 | 0.99 | FALSE |
48 | GTEx | Colon Transverse | RP5-966M1.6 | 0.10 | 0.03 | lasso | 3 | 0.05 | 1.6e-03 | -4.7 | -5.1 | 3.1e-07 | -0.35 | 0.21 | 0.31 | FALSE |
49 | GTEx | Esophagus Gastroesophageal Junction | RFT1 | 0.43 | 0.37 | enet | 18 | 0.34 | 7.0e-13 | 8.3 | 8.0 | 1.1e-15 | 0.92 | 0.01 | 0.99 | FALSE |
50 | GTEx | Esophagus Mucosa | RFT1 | 0.24 | 0.24 | enet | 10 | 0.22 | 6.2e-15 | 8.3 | 8.7 | 3.8e-18 | 0.86 | 0.01 | 0.99 | FALSE |
51 | GTEx | Esophagus Mucosa | RP5-966M1.6 | 0.11 | 0.14 | lasso | 4 | 0.14 | 9.5e-10 | -5.3 | -5.3 | 1.5e-07 | -0.37 | 1.00 | 0.00 | FALSE |
52 | GTEx | Esophagus Muscularis | RFT1 | 0.46 | 0.45 | enet | 28 | 0.44 | 6.5e-29 | 8.4 | 7.5 | 4.4e-14 | 0.89 | 0.01 | 0.99 | FALSE |
53 | GTEx | Esophagus Muscularis | GLYCTK | 0.09 | 0.10 | lasso | 4 | 0.08 | 9.7e-06 | 4.9 | 5.5 | 3.2e-08 | 0.01 | 0.10 | 0.90 | FALSE |
54 | GTEx | Esophagus Muscularis | GLYCTK-AS1 | 0.05 | 0.00 | lasso | 4 | 0.01 | 9.6e-02 | 5.0 | 5.4 | 5.7e-08 | 0.03 | 0.07 | 0.70 | FALSE |
55 | GTEx | Esophagus Muscularis | RP5-966M1.6 | 0.07 | 0.02 | enet | 10 | 0.08 | 8.3e-06 | -5.7 | -6.5 | 5.7e-11 | -0.24 | 0.72 | 0.02 | FALSE |
56 | GTEx | Heart Atrial Appendage | RFT1 | 0.14 | 0.12 | enet | 16 | 0.10 | 4.4e-05 | 5.2 | 6.8 | 7.9e-12 | 0.83 | 0.04 | 0.95 | FALSE |
57 | GTEx | Heart Atrial Appendage | GLYCTK | 0.08 | 0.02 | lasso | 5 | 0.00 | 3.0e-01 | 4.9 | 6.1 | 8.9e-10 | 0.08 | 0.06 | 0.86 | FALSE |
58 | GTEx | Heart Atrial Appendage | GLYCTK-AS1 | 0.06 | -0.01 | lasso | 2 | 0.00 | 6.1e-01 | 4.9 | 5.9 | 2.9e-09 | 0.08 | 0.07 | 0.78 | FALSE |
59 | GTEx | Liver | GNL3 | 0.14 | 0.02 | lasso | 5 | 0.04 | 3.0e-02 | -4.4 | 5.2 | 1.6e-07 | 0.24 | 0.15 | 0.06 | FALSE |
60 | GTEx | Lung | NEK4 | 0.05 | 0.01 | lasso | 3 | 0.00 | 2.1e-01 | -5.7 | 6.7 | 1.7e-11 | 0.21 | 0.74 | 0.06 | FALSE |
61 | GTEx | Lung | RFT1 | 0.24 | 0.23 | enet | 12 | 0.23 | 2.7e-17 | 8.3 | 8.7 | 5.2e-18 | 0.91 | 0.01 | 0.99 | TRUE |
62 | GTEx | Lung | GNL3 | 0.05 | 0.03 | lasso | 6 | 0.03 | 3.0e-03 | -5.1 | 6.0 | 2.2e-09 | 0.24 | 0.68 | 0.06 | FALSE |
63 | GTEx | Muscle Skeletal | NEK4 | 0.07 | 0.03 | lasso | 5 | 0.03 | 9.6e-04 | 4.9 | 5.6 | 2.0e-08 | 0.73 | 0.50 | 0.16 | FALSE |
64 | GTEx | Muscle Skeletal | RFT1 | 0.17 | 0.16 | enet | 17 | 0.15 | 3.0e-14 | 8.3 | 8.4 | 4.0e-17 | 0.91 | 0.01 | 0.99 | FALSE |
65 | GTEx | Muscle Skeletal | ITIH4-AS1 | 0.06 | 0.03 | lasso | 4 | 0.06 | 2.3e-06 | -5.3 | -5.8 | 6.6e-09 | -0.26 | 0.99 | 0.00 | FALSE |
66 | GTEx | Nerve Tibial | NEK4 | 0.06 | 0.06 | enet | 8 | 0.06 | 2.2e-05 | -5.7 | 6.0 | 1.6e-09 | 0.14 | 0.97 | 0.00 | FALSE |
67 | GTEx | Nerve Tibial | RFT1 | 0.35 | 0.31 | enet | 17 | 0.27 | 1.9e-19 | 8.4 | 8.6 | 8.8e-18 | 0.89 | 0.01 | 0.99 | FALSE |
68 | GTEx | Nerve Tibial | SFMBT1 | 0.21 | 0.10 | enet | 11 | 0.07 | 1.4e-05 | 8.4 | -8.0 | 1.0e-15 | -0.88 | 0.01 | 0.99 | FALSE |
69 | GTEx | Ovary | RFT1 | 0.40 | 0.20 | enet | 29 | 0.17 | 6.6e-05 | 8.5 | 7.5 | 9.7e-14 | 0.81 | 0.01 | 0.97 | FALSE |
70 | GTEx | Ovary | SFMBT1 | 0.24 | 0.10 | enet | 12 | 0.15 | 2.0e-04 | 7.6 | -6.6 | 4.4e-11 | -0.84 | 0.03 | 0.89 | FALSE |
71 | GTEx | Pituitary | RFT1 | 0.50 | 0.34 | enet | 25 | 0.41 | 1.6e-11 | 8.4 | 6.6 | 3.4e-11 | 0.76 | 0.01 | 0.99 | FALSE |
72 | GTEx | Pituitary | SFMBT1 | 0.16 | 0.01 | enet | 9 | 0.02 | 1.2e-01 | -6.0 | -5.9 | 2.9e-09 | -0.27 | 0.22 | 0.09 | FALSE |
73 | GTEx | Prostate | RFT1 | 0.39 | 0.18 | enet | 17 | 0.24 | 1.1e-06 | 8.4 | 8.7 | 3.2e-18 | 0.76 | 0.01 | 0.98 | FALSE |
74 | GTEx | Skin Not Sun Exposed Suprapubic | RFT1 | 0.33 | 0.29 | enet | 27 | 0.23 | 1.2e-12 | 8.3 | 7.8 | 4.6e-15 | 0.86 | 0.01 | 0.99 | FALSE |
75 | GTEx | Skin Not Sun Exposed Suprapubic | ITIH4-AS1 | 0.12 | 0.04 | enet | 13 | 0.07 | 1.6e-04 | -4.8 | -5.5 | 4.3e-08 | -0.33 | 0.65 | 0.05 | FALSE |
76 | GTEx | Skin Sun Exposed Lower leg | NEK4 | 0.06 | 0.12 | lasso | 3 | 0.10 | 2.2e-08 | -6.6 | 6.5 | 7.9e-11 | 0.11 | 1.00 | 0.00 | FALSE |
77 | GTEx | Skin Sun Exposed Lower leg | RFT1 | 0.18 | 0.16 | enet | 7 | 0.13 | 1.1e-10 | 8.3 | 8.3 | 7.2e-17 | 0.88 | 0.01 | 0.99 | FALSE |
78 | GTEx | Skin Sun Exposed Lower leg | NT5DC2 | 0.21 | 0.19 | enet | 12 | 0.18 | 2.0e-14 | -4.5 | 5.2 | 2.0e-07 | 0.04 | 0.94 | 0.06 | FALSE |
79 | GTEx | Skin Sun Exposed Lower leg | ITIH4-AS1 | 0.15 | 0.11 | enet | 28 | 0.11 | 2.4e-09 | -4.8 | -5.7 | 1.1e-08 | -0.36 | 1.00 | 0.00 | FALSE |
80 | GTEx | Small Intestine Terminal Ileum | RFT1 | 0.20 | 0.20 | enet | 19 | 0.11 | 2.2e-03 | 8.4 | 8.5 | 1.9e-17 | 0.86 | 0.02 | 0.93 | FALSE |
81 | GTEx | Small Intestine Terminal Ileum | RP5-966M1.6 | 0.14 | 0.03 | lasso | 7 | 0.00 | 2.5e-01 | -6.1 | -6.4 | 1.5e-10 | -0.28 | 0.10 | 0.09 | FALSE |
82 | GTEx | Spleen | RFT1 | 0.23 | 0.22 | enet | 7 | 0.13 | 3.6e-04 | 8.3 | 8.3 | 7.2e-17 | 0.88 | 0.01 | 0.95 | FALSE |
83 | GTEx | Spleen | ITIH4-AS1 | 0.33 | 0.35 | lasso | 2 | 0.34 | 1.7e-09 | -5.3 | -5.3 | 9.8e-08 | -0.36 | 0.94 | 0.00 | FALSE |
84 | GTEx | Stomach | RFT1 | 0.23 | 0.03 | enet | 19 | 0.06 | 6.3e-04 | 8.4 | 8.9 | 6.8e-19 | 0.65 | 0.02 | 0.97 | FALSE |
85 | GTEx | Stomach | RP5-966M1.6 | 0.15 | 0.20 | enet | 14 | 0.20 | 7.0e-10 | -4.6 | -5.3 | 9.0e-08 | -0.31 | 1.00 | 0.00 | FALSE |
86 | GTEx | Testis | RFT1 | 0.20 | 0.12 | enet | 8 | 0.10 | 2.9e-05 | 8.4 | 8.6 | 8.3e-18 | 0.95 | 0.01 | 0.99 | FALSE |
87 | GTEx | Testis | GNL3 | 0.12 | 0.18 | lasso | 7 | 0.18 | 2.4e-08 | -6.6 | 6.7 | 1.8e-11 | 0.19 | 0.99 | 0.00 | FALSE |
88 | GTEx | Testis | ITIH4-AS1 | 0.23 | 0.13 | enet | 12 | 0.21 | 8.2e-10 | 6.0 | -5.3 | 9.8e-08 | -0.22 | 0.99 | 0.00 | FALSE |
89 | GTEx | Testis | RP5-966M1.6 | 0.14 | 0.10 | lasso | 6 | 0.09 | 6.1e-05 | -5.3 | -7.4 | 1.5e-13 | -0.53 | 0.36 | 0.58 | FALSE |
90 | GTEx | Thyroid | NEK4 | 0.09 | 0.09 | lasso | 4 | 0.10 | 4.1e-08 | -6.6 | 5.9 | 3.4e-09 | 0.09 | 1.00 | 0.00 | FALSE |
91 | GTEx | Thyroid | RFT1 | 0.36 | 0.33 | enet | 17 | 0.35 | 2.4e-27 | 8.3 | 8.5 | 1.6e-17 | 0.93 | 0.01 | 0.99 | FALSE |
92 | GTEx | Thyroid | SFMBT1 | 0.13 | 0.09 | enet | 13 | 0.10 | 6.3e-08 | -4.9 | -6.4 | 1.9e-10 | -0.53 | 0.89 | 0.10 | FALSE |
93 | GTEx | Thyroid | PBRM1 | 0.19 | 0.33 | lasso | 7 | 0.31 | 2.7e-24 | -5.7 | -6.0 | 1.9e-09 | -0.12 | 1.00 | 0.00 | FALSE |
94 | GTEx | Thyroid | GLYCTK-AS1 | 0.08 | 0.07 | enet | 10 | 0.08 | 9.7e-07 | 4.9 | 5.2 | 2.1e-07 | 0.03 | 0.52 | 0.48 | FALSE |
95 | GTEx | Uterus | RFT1 | 0.52 | 0.30 | enet | 21 | 0.34 | 9.0e-08 | 7.6 | 6.9 | 5.8e-12 | 0.81 | 0.02 | 0.97 | FALSE |
96 | GTEx | Whole Blood | SPCS1 | 0.03 | 0.02 | lasso | 3 | 0.02 | 4.6e-03 | -5.5 | -5.8 | 7.5e-09 | -0.21 | 0.75 | 0.01 | FALSE |
97 | METSIM | Adipose | GNL3 | 0.04 | 0.06 | enet | 25 | 0.05 | 4.5e-08 | -6.6 | 5.7 | 1.1e-08 | 0.07 | 1.00 | 0.00 | FALSE |
98 | METSIM | Adipose | RFT1 | 0.13 | 0.19 | lasso | 7 | 0.18 | 7.8e-27 | 8.4 | 8.4 | 4.9e-17 | 0.88 | 0.01 | 0.99 | FALSE |
99 | NTR | Blood | WDR82 | 0.02 | 0.03 | blup | 325 | 0.03 | 4.9e-09 | 4.9 | -5.1 | 2.7e-07 | 0.01 | 0.68 | 0.32 | FALSE |
100 | ROSMAP | Brain Pre-frontal Cortex | GLT8D1 | 0.04 | 0.01 | blup | 362 | 0.04 | 4.8e-06 | -5.5 | -5.4 | 8.3e-08 | -0.43 | 0.71 | 0.06 | FALSE |
101 | ROSMAP | Brain Pre-frontal Cortex | SPCS1 | 0.04 | 0.03 | blup | 357 | 0.04 | 6.6e-06 | -5.7 | -5.1 | 3.0e-07 | -0.18 | 0.99 | 0.00 | FALSE |
102 | ROSMAP | Brain Pre-frontal Cortex | RFT1 | 0.04 | 0.00 | bslmm | 304 | 0.02 | 3.2e-03 | 8.4 | 8.4 | 5.5e-17 | 0.73 | 0.02 | 0.92 | FALSE |
103 | ROSMAP | Brain Pre-frontal Cortex | SFMBT1 | 0.07 | 0.02 | bslmm | 340 | 0.03 | 2.9e-04 | -5.1 | -8.3 | 6.7e-17 | -0.42 | 0.54 | 0.11 | FALSE |
104 | ROSMAP | Brain Pre-frontal Cortex | SERBP1P3 | 0.47 | 0.57 | lasso | 7 | 0.60 | 4.3e-98 | 8.4 | -7.5 | 4.5e-14 | -0.86 | 0.01 | 0.99 | FALSE |
105 | YFS | Blood | SPCS1 | 0.04 | 0.03 | enet | 19 | 0.04 | 6.0e-12 | -5.7 | -6.1 | 1.3e-09 | -0.16 | 1.00 | 0.00 | FALSE |
106 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | RFT1 | 0.18 | 0.10 | lasso | 7 | 0.10 | 1.8e-08 | 6.0 | 5.5 | 3.2e-08 | 0.27 | 1.00 | 0.00 | FALSE |
107 | The Cancer Genome Atlas | Breast Invasive Carcinoma | NEK4 | 0.01 | 0.00 | enet | 5 | 0.01 | 2.0e-02 | -6.0 | 7.0 | 2.0e-12 | 0.42 | 0.03 | 0.45 | TRUE |
108 | The Cancer Genome Atlas | Breast Invasive Carcinoma | RFT1 | 0.10 | 0.08 | enet | 11 | 0.15 | 2.3e-29 | 5.8 | 8.6 | 1.3e-17 | 0.74 | 0.03 | 0.97 | FALSE |
109 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | NEK4 | 0.07 | 0.01 | blup | 69 | 0.04 | 5.8e-03 | -6.1 | 6.4 | 1.9e-10 | 0.10 | 0.03 | 0.70 | FALSE |
110 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | RFT1 | 0.14 | 0.08 | enet | 12 | 0.15 | 5.5e-08 | 6.0 | 8.8 | 9.3e-19 | 0.79 | 0.02 | 0.98 | FALSE |
111 | The Cancer Genome Atlas | Colon Adenocarcinoma | ITIH4 | 0.08 | 0.09 | blup | 53 | 0.08 | 3.1e-05 | -4.8 | -5.8 | 6.0e-09 | -0.38 | 0.30 | 0.58 | FALSE |
112 | The Cancer Genome Atlas | Colon Adenocarcinoma | RFT1 | 0.10 | 0.05 | enet | 12 | 0.05 | 1.0e-03 | 5.9 | 8.4 | 2.9e-17 | 0.68 | 0.03 | 0.74 | FALSE |
113 | The Cancer Genome Atlas | Glioblastoma Multiforme | GNL3 | 0.17 | 0.06 | blup | 47 | 0.06 | 9.0e-03 | -5.7 | 6.0 | 1.9e-09 | 0.13 | 0.03 | 0.81 | TRUE |
114 | The Cancer Genome Atlas | Glioblastoma Multiforme | ITIH4 | 0.10 | 0.02 | blup | 53 | 0.05 | 1.2e-02 | -4.6 | -5.8 | 6.9e-09 | -0.29 | 0.04 | 0.28 | FALSE |
115 | The Cancer Genome Atlas | Glioblastoma Multiforme | RFT1 | 0.20 | 0.14 | enet | 11 | 0.09 | 8.8e-04 | 8.3 | 9.4 | 3.5e-21 | 0.82 | 0.01 | 0.94 | TRUE |
116 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ITIH4 | 0.04 | 0.02 | blup | 53 | 0.03 | 3.0e-04 | -6.0 | -5.3 | 1.1e-07 | -0.13 | 0.01 | 0.96 | FALSE |
117 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | RFT1 | 0.14 | 0.10 | lasso | 4 | 0.12 | 8.4e-14 | 8.4 | 8.6 | 1.2e-17 | 0.82 | 0.01 | 0.99 | FALSE |
118 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | GNL3 | 0.03 | 0.03 | enet | 6 | 0.04 | 3.6e-05 | -5.7 | 6.2 | 4.3e-10 | 0.13 | 0.04 | 0.96 | FALSE |
119 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ITIH4 | 0.06 | 0.06 | blup | 53 | 0.06 | 5.1e-07 | -4.9 | -6.0 | 2.1e-09 | -0.33 | 0.32 | 0.66 | FALSE |
120 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | NEK4 | 0.06 | 0.09 | lasso | 3 | 0.08 | 1.1e-09 | -6.6 | 6.6 | 4.6e-11 | 0.11 | 0.02 | 0.98 | FALSE |
121 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | RFT1 | 0.15 | 0.21 | lasso | 8 | 0.22 | 1.4e-24 | 8.3 | 8.9 | 3.9e-19 | 0.91 | 0.02 | 0.98 | FALSE |
122 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | GNL3 | 0.19 | 0.02 | enet | 9 | 0.04 | 2.0e-03 | -6.6 | 6.3 | 3.6e-10 | 0.07 | 0.03 | 0.93 | FALSE |
123 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | NEK4 | 0.07 | 0.04 | blup | 69 | 0.03 | 8.6e-03 | -6.6 | 6.5 | 1.2e-10 | 0.13 | 0.04 | 0.91 | FALSE |
124 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | RFT1 | 0.24 | 0.12 | lasso | 5 | 0.20 | 1.3e-11 | 5.8 | 8.5 | 2.0e-17 | 0.70 | 0.03 | 0.97 | FALSE |
125 | The Cancer Genome Atlas | Brain Lower Grade Glioma | GNL3 | 0.15 | 0.08 | enet | 20 | 0.11 | 3.0e-12 | -5.7 | 6.4 | 1.6e-10 | 0.17 | 0.04 | 0.96 | FALSE |
126 | The Cancer Genome Atlas | Brain Lower Grade Glioma | NEK4 | 0.08 | 0.01 | enet | 14 | 0.05 | 1.2e-06 | 3.6 | 6.2 | 4.7e-10 | 0.24 | 0.06 | 0.90 | FALSE |
127 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PBRM1 | 0.12 | 0.02 | enet | 7 | 0.04 | 2.1e-05 | 3.4 | 5.2 | 1.5e-07 | 0.20 | 0.24 | 0.23 | FALSE |
128 | The Cancer Genome Atlas | Brain Lower Grade Glioma | RFT1 | 0.22 | 0.28 | enet | 13 | 0.31 | 2.5e-36 | 8.4 | 8.8 | 8.6e-19 | 0.86 | 0.01 | 0.99 | FALSE |
129 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | RFT1 | 0.31 | 0.07 | blup | 45 | 0.19 | 1.8e-09 | 7.6 | 7.9 | 2.8e-15 | 0.66 | 0.03 | 0.97 | FALSE |
130 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | SFMBT1 | 0.17 | 0.08 | lasso | 2 | 0.06 | 5.5e-04 | 5.9 | 5.9 | 4.5e-09 | 0.31 | 0.22 | 0.13 | FALSE |
131 | The Cancer Genome Atlas | Lung Adenocarcinoma | RFT1 | 0.14 | 0.11 | blup | 45 | 0.11 | 1.9e-12 | 5.8 | 7.5 | 9.0e-14 | 0.50 | 1.00 | 0.00 | FALSE |
132 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | RFT1 | 0.07 | 0.03 | enet | 7 | 0.06 | 1.2e-07 | 5.3 | 8.3 | 7.5e-17 | 0.73 | 0.08 | 0.91 | FALSE |
133 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | GNL3 | 0.16 | 0.04 | lasso | 2 | 0.10 | 4.6e-07 | 3.4 | 5.9 | 3.3e-09 | 0.16 | 0.04 | 0.95 | FALSE |
134 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | RFT1 | 0.21 | 0.10 | lasso | 6 | 0.23 | 1.9e-15 | 6.0 | 8.8 | 1.0e-18 | 0.74 | 0.03 | 0.97 | FALSE |
135 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | RFT1 | 0.41 | 0.17 | enet | 12 | 0.16 | 2.4e-07 | 8.4 | 8.9 | 6.0e-19 | 0.81 | 0.01 | 0.98 | FALSE |
136 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | GNL3 | 0.29 | 0.02 | enet | 11 | 0.08 | 3.7e-04 | -6.6 | 5.8 | 5.5e-09 | -0.04 | 0.02 | 0.75 | FALSE |
137 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | ITIH4 | 0.25 | 0.16 | blup | 53 | 0.15 | 1.6e-06 | -4.8 | -5.3 | 1.0e-07 | -0.27 | 0.16 | 0.80 | FALSE |
138 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | RFT1 | 0.23 | 0.09 | blup | 45 | 0.08 | 3.8e-04 | 8.4 | 9.4 | 4.4e-21 | 0.89 | 0.01 | 0.97 | FALSE |
139 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GNL3 | 0.04 | 0.05 | lasso | 12 | 0.05 | 9.0e-06 | -6.6 | 6.6 | 4.1e-11 | 0.11 | 0.02 | 0.98 | FALSE |
140 | The Cancer Genome Atlas | Prostate Adenocarcinoma | LOC440957 | 0.05 | 0.02 | lasso | 9 | 0.02 | 4.3e-03 | -6.6 | 6.3 | 3.8e-10 | -0.04 | 0.01 | 0.84 | FALSE |
141 | The Cancer Genome Atlas | Prostate Adenocarcinoma | NEK4 | 0.13 | 0.07 | lasso | 4 | 0.06 | 4.0e-07 | -6.6 | 6.2 | 5.7e-10 | 0.01 | 0.02 | 0.98 | FALSE |
142 | The Cancer Genome Atlas | Prostate Adenocarcinoma | RFT1 | 0.18 | 0.09 | blup | 45 | 0.09 | 4.8e-10 | 6.0 | 6.4 | 1.3e-10 | 0.39 | 1.00 | 0.00 | FALSE |
143 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SFMBT1 | 0.27 | 0.07 | lasso | 7 | 0.06 | 2.9e-07 | 6.0 | 5.5 | 3.6e-08 | 0.21 | 0.97 | 0.00 | FALSE |
144 | The Cancer Genome Atlas | Rectum Adenocarcinoma | ITIH4 | 0.12 | 0.09 | blup | 53 | 0.06 | 1.4e-02 | -6.0 | -5.4 | 5.4e-08 | -0.18 | 0.02 | 0.71 | FALSE |
145 | The Cancer Genome Atlas | Soft Tissue Sarcoma | GNL3 | 0.07 | 0.01 | blup | 47 | 0.03 | 1.1e-02 | -6.6 | 7.3 | 2.6e-13 | 0.11 | 0.02 | 0.78 | TRUE |
146 | The Cancer Genome Atlas | Soft Tissue Sarcoma | NEK4 | 0.06 | 0.04 | blup | 69 | 0.03 | 8.2e-03 | -6.6 | 6.7 | 2.6e-11 | 0.11 | 0.02 | 0.82 | FALSE |
147 | The Cancer Genome Atlas | Soft Tissue Sarcoma | RFT1 | 0.16 | 0.12 | enet | 16 | 0.14 | 1.7e-08 | 6.0 | 8.1 | 3.8e-16 | 0.62 | 0.32 | 0.67 | FALSE |
148 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | RFT1 | 0.29 | 0.04 | blup | 45 | 0.11 | 8.2e-04 | 5.8 | 7.7 | 1.1e-14 | 0.68 | 0.03 | 0.59 | FALSE |
149 | The Cancer Genome Atlas | Stomach Adenocarcinoma | RFT1 | 0.13 | 0.05 | blup | 45 | 0.10 | 6.9e-08 | 5.9 | 8.3 | 7.1e-17 | 0.65 | 0.03 | 0.97 | FALSE |
150 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | RFT1 | 0.39 | 0.22 | lasso | 4 | 0.25 | 3.1e-09 | 5.7 | 6.7 | 2.5e-11 | 0.42 | 0.91 | 0.06 | FALSE |
151 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | TMEM110 | 0.20 | 0.01 | lasso | 2 | 0.09 | 3.2e-04 | 6.2 | 5.9 | 4.6e-09 | 0.29 | 0.01 | 0.69 | FALSE |
152 | The Cancer Genome Atlas | Thyroid Carcinoma | GNL3 | 0.03 | 0.03 | blup | 47 | 0.03 | 3.3e-04 | -6.6 | 6.1 | 1.4e-09 | 0.11 | 0.03 | 0.96 | FALSE |
153 | The Cancer Genome Atlas | Thyroid Carcinoma | NEK4 | 0.07 | 0.12 | blup | 69 | 0.12 | 6.3e-12 | -5.7 | 6.1 | 8.2e-10 | 0.08 | 0.04 | 0.96 | FALSE |
154 | The Cancer Genome Atlas | Thyroid Carcinoma | RFT1 | 0.25 | 0.30 | lasso | 4 | 0.29 | 3.8e-28 | 8.4 | 8.0 | 1.8e-15 | 0.87 | 0.01 | 0.99 | FALSE |
155 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | RFT1 | 0.29 | 0.15 | blup | 45 | 0.15 | 6.5e-05 | 5.3 | 7.5 | 5.2e-14 | 0.61 | 0.04 | 0.63 | FALSE |