Best TWAS P=1.33e-30 · Best GWAS P=2.99e-28 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | MED24 | 0.23 | 0.28 | bslmm | 313 | 0.29 | 2.2e-35 | 7.6 | -8.1 | 4.5e-16 | 0.36 | 1.00 | 0.00 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | ORMDL3 | 0.09 | 0.08 | enet | 10 | 0.06 | 4.2e-08 | -11.0 | -10.0 | 9.9e-24 | 0.90 | 0.01 | 0.99 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | PNMT | 0.05 | 0.00 | bslmm | 327 | 0.00 | 8.2e-02 | -6.6 | 7.7 | 1.1e-14 | -0.51 | 0.06 | 0.06 | FALSE |
4 | CommonMind | Brain Pre-frontal Cortex | SMARCE1 | 0.10 | 0.12 | lasso | 4 | 0.11 | 5.7e-13 | -6.2 | 6.2 | 6.3e-10 | 0.02 | 0.86 | 0.14 | FALSE |
5 | GTEx | Adipose Subcutaneous | MED24 | 0.17 | 0.14 | lasso | 4 | 0.14 | 1.9e-11 | -7.2 | 7.2 | 7.1e-13 | -0.30 | 1.00 | 0.00 | FALSE |
6 | GTEx | Adipose Subcutaneous | THRA | 0.12 | 0.00 | enet | 23 | 0.02 | 1.6e-02 | 8.3 | -7.5 | 9.6e-14 | 0.42 | 0.09 | 0.05 | FALSE |
7 | GTEx | Adipose Subcutaneous | MSL1 | 0.15 | 0.12 | lasso | 2 | 0.12 | 3.9e-10 | -5.8 | 5.8 | 9.1e-09 | -0.25 | 1.00 | 0.00 | FALSE |
8 | GTEx | Adipose Subcutaneous | KRT222 | 0.11 | 0.09 | lasso | 4 | 0.10 | 1.3e-08 | 8.1 | -9.0 | 2.0e-19 | -0.04 | 0.03 | 0.97 | TRUE |
9 | GTEx | Adipose Visceral Omentum | PGAP3 | 0.12 | 0.11 | lasso | 6 | 0.10 | 7.1e-06 | -7.1 | -7.4 | 1.7e-13 | 0.54 | 0.69 | 0.29 | FALSE |
10 | GTEx | Adrenal Gland | PGAP3 | 0.17 | 0.14 | lasso | 2 | 0.12 | 3.2e-05 | -6.3 | -7.1 | 1.1e-12 | 0.48 | 0.44 | 0.29 | FALSE |
11 | GTEx | Artery Aorta | MED24 | 0.28 | 0.25 | lasso | 8 | 0.24 | 2.6e-13 | -7.5 | 6.9 | 5.6e-12 | -0.26 | 1.00 | 0.00 | FALSE |
12 | GTEx | Artery Aorta | PGAP3 | 0.13 | 0.04 | lasso | 3 | 0.10 | 5.3e-06 | -6.3 | -6.2 | 5.6e-10 | 0.41 | 0.62 | 0.22 | FALSE |
13 | GTEx | Artery Coronary | PGAP3 | 0.16 | 0.10 | lasso | 4 | 0.06 | 5.9e-03 | -7.5 | -7.4 | 1.2e-13 | 0.53 | 0.17 | 0.31 | FALSE |
14 | GTEx | Artery Tibial | MED24 | 0.32 | 0.38 | lasso | 6 | 0.36 | 6.9e-30 | -7.5 | 7.3 | 2.2e-13 | -0.29 | 1.00 | 0.00 | FALSE |
15 | GTEx | Artery Tibial | MSL1 | 0.19 | 0.14 | lasso | 2 | 0.15 | 4.9e-12 | -5.8 | 5.4 | 6.1e-08 | -0.25 | 1.00 | 0.00 | FALSE |
16 | GTEx | Brain Cerebellum | GSDMB | 0.24 | 0.09 | lasso | 2 | 0.08 | 2.1e-03 | 2.3 | -5.3 | 1.4e-07 | 0.42 | 0.06 | 0.58 | FALSE |
17 | GTEx | Brain Nucleus accumbens basal ganglia | RAPGEFL1 | 0.16 | 0.06 | lasso | 4 | 0.07 | 7.7e-03 | 9.6 | 10.6 | 4.9e-26 | -0.80 | 0.06 | 0.57 | FALSE |
18 | GTEx | Brain Putamen basal ganglia | GSDMB | 0.26 | 0.09 | lasso | 6 | 0.20 | 1.5e-05 | 5.0 | -5.8 | 6.2e-09 | 0.58 | 0.05 | 0.55 | FALSE |
19 | GTEx | Breast Mammary Tissue | PGAP3 | 0.10 | 0.07 | lasso | 4 | 0.07 | 1.5e-04 | -7.0 | -6.0 | 1.6e-09 | 0.56 | 0.21 | 0.31 | FALSE |
20 | GTEx | Breast Mammary Tissue | ORMDL3 | 0.17 | 0.04 | enet | 27 | 0.06 | 7.2e-04 | 7.8 | 8.6 | 1.0e-17 | -0.72 | 0.06 | 0.89 | FALSE |
21 | GTEx | Breast Mammary Tissue | MSL1 | 0.20 | 0.06 | lasso | 6 | 0.07 | 2.2e-04 | -5.8 | 5.7 | 9.3e-09 | -0.26 | 0.43 | 0.06 | FALSE |
22 | GTEx | Breast Mammary Tissue | KRT222 | 0.26 | 0.12 | lasso | 5 | 0.11 | 3.4e-06 | 8.1 | -8.0 | 1.4e-15 | -0.06 | 0.06 | 0.93 | FALSE |
23 | GTEx | Breast Mammary Tissue (Female) | PGAP3 | 0.10 | -0.01 | enet | 18 | 0.01 | 2.0e-01 | -7.1 | -5.5 | 3.0e-08 | 0.52 | 0.06 | 0.23 | FALSE |
24 | GTEx | Breast Mammary Tissue (Female) | MSL1 | 0.09 | 0.00 | enet | 9 | 0.03 | 5.8e-02 | -5.8 | 7.0 | 3.3e-12 | -0.31 | 0.03 | 0.05 | FALSE |
25 | GTEx | Breast Mammary Tissue (Female) | KRT222 | 0.20 | 0.01 | lasso | 5 | 0.03 | 4.2e-02 | 8.2 | -7.8 | 6.7e-15 | -0.03 | 0.04 | 0.48 | FALSE |
26 | GTEx | Cells Transformed fibroblasts | MED24 | 0.20 | 0.12 | enet | 18 | 0.11 | 1.4e-08 | -7.2 | 5.9 | 3.0e-09 | -0.30 | 1.00 | 0.00 | FALSE |
27 | GTEx | Cells Transformed fibroblasts | GSDMB | 0.11 | 0.02 | enet | 18 | 0.06 | 4.9e-05 | -10.7 | -9.1 | 8.7e-20 | 0.77 | 0.03 | 0.97 | FALSE |
28 | GTEx | Cells Transformed fibroblasts | STARD3 | 0.08 | 0.01 | enet | 18 | 0.01 | 3.3e-02 | -6.3 | -6.5 | 1.1e-10 | 0.39 | 0.27 | 0.20 | FALSE |
29 | GTEx | Cells Transformed fibroblasts | ORMDL3 | 0.24 | 0.09 | enet | 21 | 0.07 | 7.8e-06 | -11.0 | -10.7 | 1.7e-26 | 0.81 | 0.02 | 0.98 | FALSE |
30 | GTEx | Cells Transformed fibroblasts | KRT222 | 0.12 | 0.14 | lasso | 2 | 0.13 | 8.1e-10 | 8.2 | -8.3 | 1.1e-16 | -0.04 | 0.05 | 0.95 | FALSE |
31 | GTEx | Colon Sigmoid | MED24 | 0.29 | 0.24 | lasso | 5 | 0.26 | 1.1e-09 | -7.1 | 5.9 | 3.7e-09 | -0.22 | 0.99 | 0.00 | FALSE |
32 | GTEx | Colon Transverse | GSDMB | 0.14 | 0.11 | enet | 18 | 0.12 | 2.0e-06 | 10.1 | -11.1 | 9.2e-29 | 0.89 | 0.01 | 0.99 | FALSE |
33 | GTEx | Colon Transverse | PGAP3 | 0.24 | 0.20 | enet | 19 | 0.20 | 8.3e-10 | -7.1 | -7.6 | 2.9e-14 | 0.52 | 1.00 | 0.00 | FALSE |
34 | GTEx | Colon Transverse | MSL1 | 0.18 | 0.11 | lasso | 3 | 0.05 | 2.1e-03 | -5.8 | 5.7 | 1.0e-08 | -0.26 | 0.22 | 0.09 | FALSE |
35 | GTEx | Esophagus Gastroesophageal Junction | MED24 | 0.26 | 0.16 | lasso | 11 | 0.20 | 1.1e-07 | -7.2 | 6.2 | 5.9e-10 | -0.29 | 0.74 | 0.02 | FALSE |
36 | GTEx | Esophagus Mucosa | GSDMB | 0.06 | 0.04 | lasso | 3 | 0.03 | 4.7e-03 | -9.5 | -10.4 | 3.1e-25 | 0.79 | 0.04 | 0.85 | FALSE |
37 | GTEx | Esophagus Mucosa | CASC3 | 0.10 | 0.00 | lasso | 5 | 0.00 | 1.6e-01 | -7.1 | -5.6 | 1.8e-08 | 0.21 | 0.10 | 0.04 | FALSE |
38 | GTEx | Esophagus Mucosa | ORMDL3 | 0.09 | 0.01 | enet | 20 | 0.00 | 1.8e-01 | -7.5 | -8.3 | 1.1e-16 | 0.68 | 0.02 | 0.84 | FALSE |
39 | GTEx | Esophagus Mucosa | KRT222 | 0.18 | 0.12 | enet | 8 | 0.12 | 1.1e-08 | 8.6 | -8.6 | 7.3e-18 | -0.05 | 0.01 | 0.99 | FALSE |
40 | GTEx | Esophagus Muscularis | PGAP3 | 0.11 | 0.08 | enet | 10 | 0.10 | 1.1e-06 | -7.1 | -8.1 | 3.8e-16 | 0.61 | 0.72 | 0.25 | FALSE |
41 | GTEx | Esophagus Muscularis | MSL1 | 0.25 | 0.18 | lasso | 8 | 0.22 | 1.7e-13 | -5.7 | 6.3 | 2.8e-10 | -0.24 | 1.00 | 0.00 | FALSE |
42 | GTEx | Esophagus Muscularis | KRT222 | 0.12 | 0.08 | lasso | 3 | 0.08 | 2.5e-05 | 8.7 | -8.7 | 3.7e-18 | -0.03 | 0.01 | 0.99 | FALSE |
43 | GTEx | Heart Atrial Appendage | PPP1R1B | 0.09 | 0.04 | enet | 10 | 0.08 | 2.2e-04 | -9.4 | -10.8 | 3.4e-27 | 0.84 | 0.03 | 0.95 | FALSE |
44 | GTEx | Heart Atrial Appendage | ERBB2 | 0.13 | 0.04 | enet | 18 | 0.02 | 4.8e-02 | -7.6 | -7.5 | 4.6e-14 | 0.61 | 0.16 | 0.44 | FALSE |
45 | GTEx | Heart Atrial Appendage | PNMT | 0.14 | -0.01 | lasso | 8 | 0.00 | 5.3e-01 | 9.6 | -9.6 | 7.5e-22 | 0.80 | 0.14 | 0.33 | FALSE |
46 | GTEx | Heart Atrial Appendage | PGAP3 | 0.13 | 0.16 | lasso | 3 | 0.18 | 2.6e-08 | -7.9 | -7.8 | 6.7e-15 | 0.54 | 0.96 | 0.03 | FALSE |
47 | GTEx | Heart Left Ventricle | PGAP3 | 0.17 | 0.14 | lasso | 5 | 0.12 | 4.3e-07 | -6.3 | -5.9 | 3.9e-09 | 0.41 | 0.97 | 0.01 | FALSE |
48 | GTEx | Liver | NR1D1 | 0.25 | 0.00 | lasso | 6 | 0.05 | 2.1e-02 | -1.9 | -6.7 | 2.6e-11 | 0.60 | 0.03 | 0.49 | FALSE |
49 | GTEx | Liver | PGAP3 | 0.27 | 0.17 | lasso | 4 | 0.13 | 1.7e-04 | -7.5 | -8.6 | 1.2e-17 | 0.62 | 0.58 | 0.20 | FALSE |
50 | GTEx | Lung | GSDMB | 0.07 | 0.07 | lasso | 4 | 0.05 | 1.5e-04 | -11.0 | -11.3 | 1.0e-29 | 0.96 | 0.01 | 0.98 | FALSE |
51 | GTEx | Lung | PGAP3 | 0.24 | 0.14 | lasso | 7 | 0.12 | 2.3e-09 | -7.1 | -7.2 | 5.5e-13 | 0.51 | 1.00 | 0.00 | FALSE |
52 | GTEx | Lung | ORMDL3 | 0.16 | 0.13 | enet | 15 | 0.14 | 1.6e-10 | -10.7 | -10.9 | 1.6e-27 | 0.92 | 0.01 | 0.99 | FALSE |
53 | GTEx | Muscle Skeletal | PGAP3 | 0.04 | 0.03 | lasso | 5 | 0.04 | 1.3e-04 | -7.1 | -8.4 | 3.8e-17 | 0.51 | 0.65 | 0.05 | FALSE |
54 | GTEx | Nerve Tibial | MED24 | 0.29 | 0.34 | enet | 15 | 0.35 | 2.6e-25 | -7.6 | 6.2 | 5.0e-10 | -0.24 | 1.00 | 0.00 | FALSE |
55 | GTEx | Nerve Tibial | ERBB2 | 0.08 | 0.08 | lasso | 5 | 0.07 | 1.3e-05 | -7.9 | -7.7 | 1.5e-14 | 0.52 | 0.97 | 0.01 | FALSE |
56 | GTEx | Nerve Tibial | PGAP3 | 0.19 | 0.11 | lasso | 5 | 0.12 | 1.1e-08 | -7.1 | -7.1 | 1.6e-12 | 0.48 | 0.99 | 0.01 | FALSE |
57 | GTEx | Nerve Tibial | MSL1 | 0.33 | 0.25 | lasso | 4 | 0.24 | 6.3e-17 | -5.8 | 5.9 | 3.2e-09 | -0.26 | 1.00 | 0.00 | FALSE |
58 | GTEx | Nerve Tibial | KRT222 | 0.19 | 0.14 | lasso | 3 | 0.14 | 2.9e-10 | 8.5 | -8.3 | 1.0e-16 | -0.06 | 0.03 | 0.97 | FALSE |
59 | GTEx | Ovary | MED24 | 0.39 | 0.34 | lasso | 4 | 0.34 | 3.4e-09 | -7.5 | 7.2 | 7.9e-13 | -0.28 | 0.75 | 0.01 | FALSE |
60 | GTEx | Pancreas | PGAP3 | 0.37 | 0.25 | lasso | 6 | 0.21 | 1.9e-09 | -7.5 | -8.6 | 1.2e-17 | 0.64 | 0.94 | 0.06 | FALSE |
61 | GTEx | Pituitary | MED24 | 0.37 | 0.28 | lasso | 3 | 0.21 | 6.1e-06 | -7.2 | 7.2 | 7.3e-13 | -0.33 | 0.48 | 0.03 | FALSE |
62 | GTEx | Pituitary | PGAP3 | 0.15 | 0.22 | lasso | 2 | 0.19 | 1.8e-05 | -7.6 | -7.6 | 2.4e-14 | 0.54 | 0.24 | 0.33 | FALSE |
63 | GTEx | Pituitary | MSL1 | 0.40 | 0.27 | lasso | 7 | 0.24 | 1.3e-06 | -5.0 | 6.3 | 3.0e-10 | -0.28 | 0.22 | 0.14 | FALSE |
64 | GTEx | Prostate | PGAP3 | 0.23 | 0.03 | enet | 26 | 0.06 | 1.6e-02 | -7.1 | -8.7 | 4.4e-18 | 0.53 | 0.21 | 0.16 | FALSE |
65 | GTEx | Skin Not Sun Exposed Suprapubic | MED24 | 0.14 | 0.11 | lasso | 2 | 0.11 | 9.4e-07 | -7.6 | 5.4 | 6.1e-08 | -0.21 | 0.55 | 0.03 | FALSE |
66 | GTEx | Skin Not Sun Exposed Suprapubic | PGAP3 | 0.22 | 0.09 | enet | 33 | 0.14 | 3.4e-08 | -7.1 | -7.8 | 6.6e-15 | 0.54 | 0.92 | 0.08 | FALSE |
67 | GTEx | Skin Not Sun Exposed Suprapubic | TCAP | 0.07 | 0.02 | enet | 7 | 0.01 | 1.2e-01 | -8.0 | -7.7 | 9.8e-15 | 0.53 | 0.11 | 0.32 | FALSE |
68 | GTEx | Skin Not Sun Exposed Suprapubic | MSL1 | 0.18 | 0.15 | lasso | 4 | 0.15 | 2.1e-08 | -5.8 | 5.5 | 3.8e-08 | -0.26 | 0.89 | 0.02 | FALSE |
69 | GTEx | Skin Not Sun Exposed Suprapubic | KRT222 | 0.15 | 0.02 | enet | 14 | 0.02 | 4.6e-02 | -3.3 | -7.4 | 1.7e-13 | -0.03 | 0.09 | 0.74 | FALSE |
70 | GTEx | Skin Sun Exposed Lower leg | MED24 | 0.20 | 0.18 | lasso | 4 | 0.18 | 2.0e-14 | -7.2 | 7.2 | 5.9e-13 | -0.30 | 1.00 | 0.00 | FALSE |
71 | GTEx | Skin Sun Exposed Lower leg | ERBB2 | 0.10 | 0.01 | enet | 8 | 0.01 | 3.5e-02 | -7.9 | -9.3 | 1.7e-20 | 0.72 | 0.16 | 0.61 | FALSE |
72 | GTEx | Skin Sun Exposed Lower leg | PGAP3 | 0.14 | 0.10 | lasso | 6 | 0.07 | 1.1e-06 | -7.5 | -7.0 | 3.7e-12 | 0.48 | 0.86 | 0.14 | FALSE |
73 | GTEx | Skin Sun Exposed Lower leg | ORMDL3 | 0.04 | 0.02 | lasso | 5 | 0.01 | 1.1e-01 | -6.3 | -6.2 | 6.4e-10 | 0.39 | 0.02 | 0.85 | FALSE |
74 | GTEx | Skin Sun Exposed Lower leg | MSL1 | 0.08 | 0.04 | lasso | 2 | 0.05 | 8.1e-05 | -4.8 | 5.7 | 1.2e-08 | -0.24 | 0.51 | 0.04 | FALSE |
75 | GTEx | Spleen | MED24 | 0.35 | 0.21 | lasso | 6 | 0.24 | 6.5e-07 | -7.2 | 6.3 | 2.7e-10 | -0.31 | 0.69 | 0.02 | FALSE |
76 | GTEx | Spleen | GSDMB | 0.50 | 0.45 | enet | 14 | 0.43 | 1.9e-12 | -11.0 | -11.3 | 1.1e-29 | 0.97 | 0.01 | 0.99 | FALSE |
77 | GTEx | Spleen | ORMDL3 | 0.40 | 0.44 | enet | 11 | 0.39 | 5.7e-11 | -11.0 | -11.4 | 6.8e-30 | 0.99 | 0.01 | 0.99 | FALSE |
78 | GTEx | Stomach | PGAP3 | 0.41 | 0.18 | enet | 16 | 0.25 | 2.3e-12 | -7.1 | -6.9 | 6.4e-12 | 0.55 | 0.97 | 0.03 | FALSE |
79 | GTEx | Testis | MSL1 | 0.23 | 0.05 | enet | 9 | 0.15 | 2.9e-07 | -5.8 | 6.6 | 4.3e-11 | -0.42 | 0.31 | 0.13 | FALSE |
80 | GTEx | Thyroid | SMARCE1 | 0.08 | 0.07 | lasso | 3 | 0.06 | 2.9e-05 | 8.5 | -8.5 | 1.3e-17 | -0.05 | 0.02 | 0.98 | FALSE |
81 | GTEx | Thyroid | CASC3 | 0.07 | 0.00 | enet | 8 | 0.00 | 2.2e-01 | -1.8 | -8.1 | 7.6e-16 | 0.32 | 0.05 | 0.25 | FALSE |
82 | GTEx | Thyroid | THRA | 0.06 | 0.01 | lasso | 4 | 0.00 | 3.5e-01 | 7.6 | -7.4 | 1.1e-13 | 0.29 | 0.04 | 0.53 | FALSE |
83 | GTEx | Thyroid | PGAP3 | 0.19 | 0.21 | lasso | 10 | 0.24 | 3.5e-18 | -7.9 | -8.8 | 1.9e-18 | 0.64 | 1.00 | 0.00 | FALSE |
84 | GTEx | Thyroid | KRT222 | 0.10 | 0.02 | lasso | 4 | 0.03 | 4.1e-03 | 8.1 | -7.1 | 1.6e-12 | -0.06 | 0.04 | 0.79 | FALSE |
85 | GTEx | Thyroid | RP11-690G19.3 | 0.04 | 0.03 | enet | 6 | 0.02 | 1.5e-02 | -8.3 | 8.3 | 1.5e-16 | -0.53 | 0.01 | 0.98 | FALSE |
86 | GTEx | Whole Blood | GSDMB | 0.15 | 0.10 | lasso | 4 | 0.10 | 4.5e-09 | -10.7 | -10.7 | 8.4e-27 | 0.95 | 0.02 | 0.98 | FALSE |
87 | GTEx | Whole Blood | ORMDL3 | 0.18 | 0.12 | lasso | 5 | 0.14 | 1.8e-12 | -11.0 | -10.9 | 7.0e-28 | 0.97 | 0.01 | 0.99 | FALSE |
88 | METSIM | Adipose | GSDMA | 0.14 | 0.16 | lasso | 7 | 0.17 | 2.6e-24 | -9.5 | 10.0 | 1.7e-23 | -0.66 | 1.00 | 0.00 | FALSE |
89 | METSIM | Adipose | GSDMB | 0.08 | 0.04 | enet | 15 | 0.05 | 6.2e-08 | 2.5 | -5.9 | 3.1e-09 | 0.58 | 0.46 | 0.54 | FALSE |
90 | METSIM | Adipose | MED24 | 0.28 | 0.32 | enet | 32 | 0.35 | 9.9e-54 | -7.2 | 6.2 | 4.4e-10 | -0.24 | 1.00 | 0.00 | FALSE |
91 | METSIM | Adipose | MSL1 | 0.12 | 0.06 | lasso | 10 | 0.06 | 1.8e-09 | -5.8 | 6.3 | 3.8e-10 | -0.30 | 0.98 | 0.02 | FALSE |
92 | METSIM | Adipose | PGAP3 | 0.06 | 0.05 | lasso | 4 | 0.05 | 8.8e-08 | -7.5 | -7.2 | 6.5e-13 | 0.50 | 1.00 | 0.00 | FALSE |
93 | METSIM | Adipose | RP11-387H17.4 | 0.04 | 0.00 | bslmm | 286 | 0.01 | 8.4e-03 | -2.6 | 7.4 | 1.8e-13 | -0.67 | 0.04 | 0.61 | FALSE |
94 | METSIM | Adipose | SMARCE1 | 0.10 | 0.12 | lasso | 2 | 0.13 | 2.3e-18 | -6.2 | 6.2 | 4.8e-10 | 0.02 | 1.00 | 0.00 | FALSE |
95 | NTR | Blood | GSDMB | 0.09 | 0.10 | enet | 16 | 0.12 | 3.8e-36 | -10.5 | -9.8 | 1.9e-22 | 0.88 | 0.07 | 0.93 | FALSE |
96 | NTR | Blood | IKZF3 | 0.04 | 0.03 | blup | 319 | 0.02 | 1.5e-08 | 9.6 | 10.4 | 1.5e-25 | -0.85 | 0.10 | 0.90 | FALSE |
97 | NTR | Blood | ORMDL3 | 0.10 | 0.10 | enet | 24 | 0.12 | 4.4e-36 | 9.9 | -8.9 | 4.1e-19 | 0.85 | 0.08 | 0.92 | FALSE |
98 | NTR | Blood | SMARCE1 | 0.04 | 0.03 | lasso | 4 | 0.04 | 6.5e-13 | 8.6 | 8.1 | 4.4e-16 | 0.05 | 0.01 | 0.99 | FALSE |
99 | YFS | Blood | CASC3 | 0.09 | 0.02 | lasso | 4 | 0.03 | 1.5e-09 | 3.4 | -5.4 | 7.5e-08 | 0.15 | 0.97 | 0.00 | TRUE |
100 | YFS | Blood | GSDMB | 0.36 | 0.41 | lasso | 12 | 0.49 | 4.0e-186 | -10.8 | -9.8 | 1.4e-22 | 0.90 | 0.06 | 0.94 | FALSE |
101 | YFS | Blood | ORMDL3 | 0.31 | 0.36 | lasso | 9 | 0.45 | 2.2e-165 | -10.8 | -9.3 | 1.5e-20 | 0.86 | 0.04 | 0.96 | FALSE |
102 | YFS | Blood | PGAP3 | 0.08 | 0.12 | lasso | 11 | 0.12 | 1.7e-35 | -7.1 | -6.9 | 6.0e-12 | 0.54 | 1.00 | 0.00 | FALSE |
103 | YFS | Blood | SMARCE1 | 0.32 | 0.48 | lasso | 10 | 0.49 | 1.0e-187 | -6.2 | 6.7 | 3.0e-11 | 0.03 | 1.00 | 0.00 | FALSE |
104 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | GSDMA | 0.05 | 0.06 | lasso | 4 | 0.05 | 7.8e-05 | -8.1 | 8.2 | 2.2e-16 | -0.51 | 0.25 | 0.08 | FALSE |
105 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | KRT24 | 0.08 | 0.08 | blup | 49 | 0.09 | 3.6e-08 | 5.5 | -7.1 | 1.7e-12 | -0.04 | 0.03 | 0.97 | FALSE |
106 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | PGAP3 | 0.07 | 0.12 | blup | 37 | 0.11 | 1.2e-09 | -7.1 | -7.7 | 1.1e-14 | 0.56 | 0.29 | 0.71 | FALSE |
107 | The Cancer Genome Atlas | Breast Invasive Carcinoma | GSDMA | 0.61 | 0.49 | lasso | 5 | 0.51 | 5.0e-124 | -8.1 | 8.2 | 1.5e-16 | -0.50 | 1.00 | 0.00 | FALSE |
108 | The Cancer Genome Atlas | Breast Invasive Carcinoma | KRT222 | 0.04 | 0.01 | blup | 44 | 0.02 | 5.1e-05 | -3.3 | -5.3 | 1.2e-07 | -0.06 | 0.15 | 0.21 | FALSE |
109 | The Cancer Genome Atlas | Breast Invasive Carcinoma | PGAP3 | 0.08 | 0.07 | blup | 41 | 0.08 | 2.7e-16 | -7.5 | -6.9 | 5.3e-12 | 0.56 | 0.72 | 0.28 | FALSE |
110 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SMARCE1 | 0.02 | 0.01 | blup | 42 | 0.02 | 1.3e-04 | -6.2 | 8.2 | 2.9e-16 | 0.04 | 0.01 | 0.97 | FALSE |
111 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | GSDMA | 0.08 | 0.03 | enet | 10 | 0.08 | 9.7e-05 | -8.1 | 6.7 | 1.9e-11 | -0.35 | 0.07 | 0.16 | FALSE |
112 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | KRT24 | 0.05 | 0.05 | lasso | 3 | 0.05 | 1.8e-03 | 5.2 | -5.2 | 2.6e-07 | -0.05 | 0.04 | 0.24 | FALSE |
113 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | MED24 | 0.12 | 0.00 | blup | 59 | 0.02 | 4.7e-02 | 7.5 | -6.4 | 1.6e-10 | 0.33 | 0.01 | 0.78 | FALSE |
114 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | PGAP3 | 0.04 | 0.01 | blup | 41 | 0.01 | 1.2e-01 | -7.1 | -7.4 | 9.8e-14 | 0.54 | 0.02 | 0.70 | FALSE |
115 | The Cancer Genome Atlas | Colon Adenocarcinoma | GSDMB | 0.10 | 0.15 | blup | 40 | 0.14 | 1.2e-08 | 9.9 | -10.2 | 1.4e-24 | 0.92 | 0.03 | 0.97 | FALSE |
116 | The Cancer Genome Atlas | Colon Adenocarcinoma | PGAP3 | 0.10 | 0.17 | blup | 37 | 0.17 | 6.4e-10 | -7.5 | -7.8 | 4.5e-15 | 0.57 | 0.06 | 0.94 | FALSE |
117 | The Cancer Genome Atlas | Glioblastoma Multiforme | GSDMA | 0.58 | 0.33 | enet | 10 | 0.34 | 5.3e-11 | -8.1 | 8.8 | 1.4e-18 | -0.52 | 0.99 | 0.00 | FALSE |
118 | The Cancer Genome Atlas | Glioblastoma Multiforme | PGAP3 | 0.19 | 0.13 | blup | 37 | 0.16 | 1.5e-05 | -7.5 | -7.1 | 1.2e-12 | 0.53 | 0.06 | 0.87 | FALSE |
119 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | KRT222 | 0.02 | 0.01 | lasso | 5 | 0.01 | 6.8e-02 | 8.5 | -9.0 | 2.6e-19 | -0.01 | 0.01 | 0.78 | FALSE |
120 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | PGAP3 | 0.04 | 0.08 | lasso | 1 | 0.07 | 1.5e-08 | -7.5 | -7.5 | 8.9e-14 | 0.54 | 0.09 | 0.91 | FALSE |
121 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | STARD3 | 0.03 | 0.04 | enet | 5 | 0.02 | 8.2e-04 | -5.8 | -6.1 | 8.1e-10 | 0.37 | 0.15 | 0.80 | FALSE |
122 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | GSDMA | 0.66 | 0.48 | enet | 21 | 0.51 | 1.2e-65 | -8.1 | 8.2 | 1.9e-16 | -0.48 | 1.00 | 0.00 | FALSE |
123 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | KRT222 | 0.06 | 0.03 | lasso | 1 | 0.03 | 2.7e-04 | 8.1 | -8.1 | 6.8e-16 | -0.07 | 0.07 | 0.54 | FALSE |
124 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ORMDL3 | 0.01 | 0.01 | blup | 36 | 0.00 | 8.5e-02 | 9.9 | -10.5 | 1.1e-25 | 0.93 | 0.02 | 0.61 | FALSE |
125 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PGAP3 | 0.12 | 0.12 | lasso | 4 | 0.13 | 5.3e-14 | -7.5 | -6.6 | 4.8e-11 | 0.51 | 0.56 | 0.44 | FALSE |
126 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SMARCE1 | 0.07 | 0.05 | lasso | 3 | 0.06 | 8.0e-08 | -6.2 | 7.2 | 5.6e-13 | 0.00 | 0.10 | 0.90 | FALSE |
127 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | GSDMA | 0.37 | 0.44 | lasso | 1 | 0.44 | 3.3e-27 | -8.1 | 8.1 | 4.2e-16 | -0.47 | 1.00 | 0.00 | FALSE |
128 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | PGAP3 | 0.16 | 0.16 | enet | 14 | 0.15 | 5.1e-09 | -7.5 | -6.5 | 8.3e-11 | 0.49 | 0.33 | 0.67 | FALSE |
129 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | SMARCE1 | 0.06 | 0.08 | enet | 8 | 0.05 | 5.0e-04 | 5.7 | 5.9 | 3.6e-09 | 0.03 | 0.46 | 0.14 | FALSE |
130 | The Cancer Genome Atlas | Brain Lower Grade Glioma | GSDMA | 0.65 | 0.56 | lasso | 4 | 0.58 | 1.5e-81 | -8.1 | 8.3 | 1.3e-16 | -0.49 | 1.00 | 0.00 | FALSE |
131 | The Cancer Genome Atlas | Brain Lower Grade Glioma | GSDMB | 0.06 | 0.05 | enet | 7 | 0.05 | 2.2e-06 | -11.0 | -10.9 | 1.7e-27 | 0.95 | 0.02 | 0.98 | FALSE |
132 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MED24 | 0.04 | 0.02 | enet | 7 | 0.03 | 1.7e-04 | 7.6 | -5.8 | 5.1e-09 | 0.34 | 0.03 | 0.81 | FALSE |
133 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PGAP3 | 0.05 | 0.08 | lasso | 10 | 0.08 | 2.1e-09 | -7.5 | -7.7 | 1.2e-14 | 0.54 | 0.06 | 0.94 | FALSE |
134 | The Cancer Genome Atlas | Brain Lower Grade Glioma | SMARCE1 | 0.04 | 0.00 | enet | 6 | 0.03 | 6.1e-04 | 8.5 | 7.2 | 4.9e-13 | 0.03 | 0.02 | 0.66 | FALSE |
135 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | GSDMA | 0.41 | 0.37 | lasso | 2 | 0.38 | 3.7e-19 | -8.1 | 8.1 | 4.0e-16 | -0.50 | 1.00 | 0.00 | FALSE |
136 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | PGAP3 | 0.09 | 0.11 | lasso | 4 | 0.11 | 5.9e-06 | -7.0 | -7.2 | 5.5e-13 | 0.55 | 0.21 | 0.74 | FALSE |
137 | The Cancer Genome Atlas | Lung Adenocarcinoma | GSDMA | 0.30 | 0.35 | lasso | 4 | 0.35 | 6.3e-43 | -8.1 | 8.1 | 4.2e-16 | -0.43 | 1.00 | 0.00 | FALSE |
138 | The Cancer Genome Atlas | Lung Adenocarcinoma | GSDMB | 0.05 | 0.07 | blup | 39 | 0.05 | 1.4e-06 | -10.9 | -11.3 | 2.3e-29 | 0.98 | 0.01 | 0.99 | FALSE |
139 | The Cancer Genome Atlas | Lung Adenocarcinoma | KRT222 | 0.03 | 0.03 | blup | 45 | 0.03 | 2.0e-04 | 8.1 | -8.3 | 8.0e-17 | -0.06 | 0.04 | 0.90 | FALSE |
140 | The Cancer Genome Atlas | Lung Adenocarcinoma | PGAP3 | 0.06 | 0.06 | lasso | 4 | 0.06 | 4.5e-07 | -7.7 | -7.8 | 8.2e-15 | 0.57 | 0.05 | 0.95 | FALSE |
141 | The Cancer Genome Atlas | Lung Adenocarcinoma | STARD3 | 0.05 | 0.02 | blup | 50 | 0.02 | 1.1e-03 | -7.7 | -5.9 | 3.8e-09 | 0.43 | 0.04 | 0.72 | FALSE |
142 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | GSDMA | 0.15 | 0.19 | enet | 9 | 0.19 | 1.7e-21 | -8.1 | 8.7 | 5.0e-18 | -0.50 | 1.00 | 0.00 | FALSE |
143 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | GSDMB | 0.02 | 0.01 | blup | 39 | 0.01 | 1.5e-02 | -10.9 | -10.7 | 7.2e-27 | 0.93 | 0.02 | 0.79 | FALSE |
144 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | KRT24 | 0.04 | 0.03 | blup | 49 | 0.03 | 2.2e-04 | 5.3 | -6.5 | 6.8e-11 | -0.04 | 0.03 | 0.97 | FALSE |
145 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | ORMDL3 | 0.03 | 0.04 | lasso | 2 | 0.04 | 2.9e-05 | 10.1 | -10.7 | 7.8e-27 | 0.94 | 0.03 | 0.96 | FALSE |
146 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | PGAP3 | 0.06 | 0.10 | lasso | 2 | 0.09 | 1.5e-10 | -7.5 | -7.4 | 1.1e-13 | 0.54 | 0.07 | 0.93 | FALSE |
147 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | STARD3 | 0.03 | 0.03 | enet | 8 | 0.04 | 6.6e-05 | -7.9 | -7.9 | 3.1e-15 | 0.51 | 0.03 | 0.95 | FALSE |
148 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | GSDMA | 0.50 | 0.37 | enet | 15 | 0.43 | 4.2e-31 | -8.1 | 7.7 | 1.2e-14 | -0.42 | 1.00 | 0.00 | FALSE |
149 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | GSDMA | 0.23 | 0.29 | enet | 6 | 0.24 | 2.8e-10 | -8.1 | 8.2 | 3.7e-16 | -0.46 | 1.00 | 0.00 | FALSE |
150 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | GSDMB | 0.14 | 0.16 | lasso | 4 | 0.14 | 2.4e-06 | 9.9 | -9.8 | 1.7e-22 | 0.87 | 0.27 | 0.69 | FALSE |
151 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | PGAP3 | 0.07 | 0.10 | lasso | 2 | 0.08 | 3.7e-04 | -8.3 | -8.3 | 8.5e-17 | 0.49 | 0.00 | 0.94 | FALSE |
152 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | SMARCE1 | 0.13 | 0.11 | lasso | 4 | 0.11 | 2.6e-05 | 8.6 | 9.0 | 2.3e-19 | 0.04 | 0.01 | 0.98 | FALSE |
153 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | GSDMA | 0.52 | 0.34 | lasso | 4 | 0.36 | 5.1e-15 | -8.1 | 7.6 | 3.4e-14 | -0.44 | 1.00 | 0.00 | FALSE |
154 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | PGAP3 | 0.17 | 0.13 | blup | 41 | 0.10 | 6.8e-05 | -7.7 | -8.1 | 4.5e-16 | 0.60 | 0.05 | 0.90 | FALSE |
155 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | SMARCE1 | 0.12 | 0.06 | blup | 42 | 0.11 | 4.7e-05 | 5.5 | 5.8 | 8.4e-09 | 0.01 | 0.14 | 0.31 | FALSE |
156 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GSDMA | 0.16 | 0.12 | lasso | 2 | 0.12 | 1.1e-12 | -8.1 | 7.9 | 2.8e-15 | -0.46 | 1.00 | 0.00 | FALSE |
157 | The Cancer Genome Atlas | Prostate Adenocarcinoma | KRT222 | 0.06 | 0.04 | enet | 7 | 0.06 | 9.7e-07 | 8.1 | -8.9 | 8.0e-19 | -0.04 | 0.03 | 0.97 | FALSE |
158 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PGAP3 | 0.18 | 0.26 | enet | 12 | 0.28 | 5.7e-30 | -7.5 | -7.2 | 8.7e-13 | 0.54 | 0.30 | 0.70 | FALSE |
159 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SMARCE1 | 0.12 | 0.09 | lasso | 1 | 0.08 | 5.5e-09 | -6.2 | 6.2 | 5.5e-10 | 0.02 | 0.40 | 0.60 | FALSE |
160 | The Cancer Genome Atlas | Prostate Adenocarcinoma | STARD3 | 0.05 | 0.04 | blup | 50 | 0.05 | 9.8e-06 | -7.1 | -6.0 | 1.6e-09 | 0.49 | 0.04 | 0.96 | FALSE |
161 | The Cancer Genome Atlas | Rectum Adenocarcinoma | GSDMB | 0.14 | 0.09 | blup | 39 | 0.17 | 7.0e-05 | 9.9 | -10.8 | 2.4e-27 | 0.94 | 0.02 | 0.88 | FALSE |
162 | The Cancer Genome Atlas | Rectum Adenocarcinoma | PGAP3 | 0.20 | 0.14 | blup | 38 | 0.16 | 1.4e-04 | -7.0 | -7.3 | 3.6e-13 | 0.59 | 0.02 | 0.66 | FALSE |
163 | The Cancer Genome Atlas | Soft Tissue Sarcoma | GSDMA | 0.44 | 0.45 | lasso | 4 | 0.44 | 3.2e-28 | -8.1 | 8.3 | 1.3e-16 | -0.49 | 1.00 | 0.00 | FALSE |
164 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | GSDMA | 0.23 | 0.16 | blup | 47 | 0.18 | 1.3e-05 | -8.1 | 9.5 | 2.8e-21 | -0.59 | 0.14 | 0.42 | FALSE |
165 | The Cancer Genome Atlas | Stomach Adenocarcinoma | GSDMA | 0.22 | 0.09 | enet | 9 | 0.13 | 2.3e-09 | -8.1 | 6.5 | 6.8e-11 | -0.30 | 1.00 | 0.00 | FALSE |
166 | The Cancer Genome Atlas | Stomach Adenocarcinoma | GSDMB | 0.06 | 0.08 | enet | 7 | 0.08 | 1.1e-06 | -11.0 | -10.9 | 1.2e-27 | 0.95 | 0.02 | 0.98 | FALSE |
167 | The Cancer Genome Atlas | Stomach Adenocarcinoma | IKZF3 | 0.03 | 0.01 | blup | 43 | 0.02 | 1.3e-02 | -10.8 | 10.1 | 6.3e-24 | -0.82 | 0.01 | 0.71 | FALSE |
168 | The Cancer Genome Atlas | Stomach Adenocarcinoma | PGAP3 | 0.05 | 0.05 | lasso | 4 | 0.05 | 1.0e-04 | -8.0 | -8.4 | 3.8e-17 | 0.53 | 0.01 | 0.98 | FALSE |
169 | The Cancer Genome Atlas | Stomach Adenocarcinoma | SMARCE1 | 0.06 | 0.06 | lasso | 2 | 0.06 | 3.1e-05 | -6.2 | 7.4 | 9.9e-14 | 0.02 | 0.01 | 0.98 | FALSE |
170 | The Cancer Genome Atlas | Stomach Adenocarcinoma | ZPBP2 | 0.08 | 0.09 | enet | 5 | 0.10 | 6.1e-08 | -11.0 | 11.1 | 1.1e-28 | -0.97 | 0.01 | 0.99 | FALSE |
171 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | GSDMA | 0.38 | 0.32 | enet | 7 | 0.32 | 5.9e-12 | -8.1 | 8.3 | 1.1e-16 | -0.49 | 1.00 | 0.00 | FALSE |
172 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | KRT222 | 0.10 | 0.06 | blup | 44 | 0.04 | 1.4e-02 | 8.3 | -7.7 | 1.4e-14 | -0.06 | 0.02 | 0.44 | FALSE |
173 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | PGAP3 | 0.23 | 0.22 | blup | 38 | 0.24 | 3.6e-09 | -6.3 | -6.0 | 1.7e-09 | 0.43 | 0.25 | 0.74 | FALSE |
174 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | PNMT | 0.07 | 0.14 | lasso | 1 | 0.10 | 1.5e-04 | -8.3 | -8.3 | 9.2e-17 | 0.49 | 0.00 | 0.99 | FALSE |
175 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | STARD3 | 0.05 | 0.06 | lasso | 2 | 0.04 | 1.7e-02 | -7.1 | -6.6 | 4.6e-11 | 0.48 | 0.03 | 0.49 | FALSE |
176 | The Cancer Genome Atlas | Thyroid Carcinoma | C17orf37 | 0.03 | 0.01 | blup | 19 | 0.01 | 4.5e-02 | 2.5 | -6.0 | 1.7e-09 | 0.50 | 0.01 | 0.24 | FALSE |
177 | The Cancer Genome Atlas | Thyroid Carcinoma | GSDMA | 0.19 | 0.21 | lasso | 4 | 0.24 | 5.5e-23 | -8.1 | 8.8 | 2.2e-18 | -0.56 | 1.00 | 0.00 | FALSE |
178 | The Cancer Genome Atlas | Thyroid Carcinoma | GSDMB | 0.08 | 0.08 | blup | 40 | 0.09 | 6.6e-09 | -11.0 | -11.4 | 2.5e-30 | 0.89 | 0.01 | 0.99 | FALSE |
179 | The Cancer Genome Atlas | Thyroid Carcinoma | KRT222 | 0.03 | 0.02 | lasso | 1 | 0.02 | 4.3e-03 | 8.7 | -8.7 | 5.2e-18 | -0.03 | 0.00 | 0.86 | FALSE |
180 | The Cancer Genome Atlas | Thyroid Carcinoma | ORMDL3 | 0.08 | 0.13 | blup | 37 | 0.15 | 3.8e-14 | -11.0 | -11.5 | 1.3e-30 | 0.97 | 0.01 | 0.99 | TRUE |
181 | The Cancer Genome Atlas | Thyroid Carcinoma | PGAP3 | 0.10 | 0.16 | lasso | 5 | 0.17 | 1.4e-16 | -7.5 | -7.4 | 1.5e-13 | 0.52 | 0.12 | 0.88 | FALSE |
182 | The Cancer Genome Atlas | Thyroid Carcinoma | PNMT | 0.03 | 0.05 | lasso | 4 | 0.04 | 6.2e-05 | -8.3 | -8.6 | 9.1e-18 | 0.52 | 0.00 | 1.00 | FALSE |
183 | The Cancer Genome Atlas | Thyroid Carcinoma | SMARCE1 | 0.05 | 0.04 | lasso | 3 | 0.05 | 1.2e-05 | -5.5 | 5.2 | 2.4e-07 | -0.03 | 0.09 | 0.64 | FALSE |
184 | The Cancer Genome Atlas | Thyroid Carcinoma | STARD3 | 0.10 | 0.06 | lasso | 5 | 0.05 | 2.6e-05 | -8.0 | -8.0 | 9.9e-16 | 0.53 | 0.03 | 0.97 | FALSE |