Best TWAS P=1.03e-37 · Best GWAS P=1.22e-37 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | PM20D1 | 0.27 | 0.41 | enet | 15 | 0.41 | 7.8e-54 | -8.3 | -8.8 | 2.1e-18 | -0.72 | 1.00 | 0.00 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | RAB7L1 | 0.07 | 0.03 | enet | 16 | 0.05 | 4.1e-07 | 8.0 | -9.5 | 1.6e-21 | -0.84 | 0.00 | 1.00 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | SLC26A9 | 0.13 | 0.16 | lasso | 3 | 0.16 | 3.1e-19 | -8.3 | -8.3 | 1.1e-16 | -0.69 | 1.00 | 0.00 | FALSE |
4 | GTEx | Adipose Subcutaneous | NUCKS1 | 0.11 | 0.10 | lasso | 3 | 0.08 | 9.4e-07 | -10.6 | 10.7 | 1.4e-26 | 0.76 | 0.11 | 0.89 | FALSE |
5 | GTEx | Adipose Subcutaneous | RAB7L1 | 0.20 | 0.09 | lasso | 4 | 0.18 | 7.6e-15 | 5.9 | -8.5 | 2.6e-17 | -0.79 | 0.10 | 0.90 | FALSE |
6 | GTEx | Adipose Subcutaneous | CD46 | 0.07 | 0.05 | lasso | 3 | 0.03 | 7.9e-04 | 5.2 | -5.2 | 2.5e-07 | 0.04 | 0.04 | 0.95 | FALSE |
7 | GTEx | Adipose Subcutaneous | MDM4 | 0.09 | 0.02 | lasso | 4 | 0.02 | 4.3e-03 | -6.2 | -6.4 | 1.2e-10 | -0.03 | 0.01 | 0.99 | TRUE |
8 | GTEx | Adipose Visceral Omentum | RAB7L1 | 0.17 | 0.08 | enet | 15 | 0.10 | 1.2e-05 | 6.0 | -9.2 | 5.1e-20 | -0.77 | 0.01 | 0.99 | FALSE |
9 | GTEx | Adrenal Gland | NUCKS1 | 0.17 | 0.00 | enet | 11 | 0.02 | 6.7e-02 | -10.1 | 9.9 | 6.3e-23 | 0.59 | 0.05 | 0.51 | FALSE |
10 | GTEx | Artery Aorta | NUCKS1 | 0.14 | 0.11 | lasso | 3 | 0.08 | 3.7e-05 | -10.1 | 11.3 | 2.3e-29 | 0.87 | 0.04 | 0.96 | FALSE |
11 | GTEx | Artery Aorta | RAB7L1 | 0.43 | 0.20 | lasso | 8 | 0.29 | 1.9e-16 | 12.7 | -10.3 | 7.2e-25 | -0.88 | 0.01 | 0.99 | FALSE |
12 | GTEx | Artery Aorta | CD46 | 0.20 | 0.18 | enet | 11 | 0.20 | 2.5e-11 | 5.3 | -5.3 | 1.4e-07 | 0.03 | 0.03 | 0.97 | FALSE |
13 | GTEx | Artery Coronary | RAB7L1 | 0.47 | 0.10 | enet | 55 | 0.19 | 5.5e-07 | 6.4 | -8.0 | 1.8e-15 | -0.58 | 0.01 | 0.98 | FALSE |
14 | GTEx | Artery Tibial | NUCKS1 | 0.13 | 0.03 | lasso | 2 | 0.01 | 4.0e-02 | -9.4 | 8.9 | 4.5e-19 | 0.70 | 0.08 | 0.77 | FALSE |
15 | GTEx | Artery Tibial | RAB7L1 | 0.29 | 0.27 | lasso | 9 | 0.31 | 9.7e-25 | 12.7 | -10.5 | 9.3e-26 | -0.90 | 0.00 | 1.00 | FALSE |
16 | GTEx | Artery Tibial | CD46 | 0.27 | 0.35 | lasso | 4 | 0.34 | 9.0e-28 | 5.3 | -5.3 | 1.0e-07 | 0.05 | 0.02 | 0.98 | FALSE |
17 | GTEx | Artery Tibial | PLEKHA6 | 0.17 | 0.13 | enet | 15 | 0.12 | 1.2e-09 | -5.5 | 5.4 | 6.5e-08 | -0.01 | 1.00 | 0.00 | TRUE |
18 | GTEx | Artery Tibial | SNRPE | 0.13 | 0.04 | enet | 28 | 0.08 | 4.3e-07 | 8.2 | 5.5 | 4.8e-08 | 0.06 | 0.02 | 0.95 | FALSE |
19 | GTEx | Brain Caudate basal ganglia | NUCKS1 | 0.25 | 0.24 | lasso | 3 | 0.25 | 8.1e-08 | 12.8 | -12.7 | 5.6e-37 | -0.99 | 0.00 | 1.00 | FALSE |
20 | GTEx | Brain Cerebellum | NUCKS1 | 0.22 | 0.13 | lasso | 3 | 0.08 | 2.0e-03 | -9.4 | 9.9 | 2.4e-23 | 0.74 | 0.18 | 0.40 | FALSE |
21 | GTEx | Brain Cerebellum | SLC41A1 | 0.27 | 0.09 | lasso | 4 | 0.08 | 2.1e-03 | -10.1 | -11.1 | 8.6e-29 | -0.70 | 0.08 | 0.32 | FALSE |
22 | GTEx | Brain Cortex | SNRPE | 0.31 | 0.21 | lasso | 5 | 0.19 | 4.8e-06 | 7.8 | 7.5 | 4.4e-14 | 0.04 | 0.05 | 0.88 | FALSE |
23 | GTEx | Brain Hippocampus | NUCKS1 | 0.57 | 0.03 | lasso | 8 | 0.11 | 1.5e-03 | -9.4 | 8.1 | 3.8e-16 | 0.54 | 0.02 | 0.67 | FALSE |
24 | GTEx | Brain Putamen basal ganglia | NUCKS1 | 0.40 | 0.26 | lasso | 4 | 0.27 | 3.2e-07 | -10.6 | 10.1 | 4.6e-24 | 0.75 | 0.03 | 0.92 | FALSE |
25 | GTEx | Breast Mammary Tissue | NUCKS1 | 0.15 | 0.05 | lasso | 4 | 0.09 | 2.5e-05 | -10.6 | 10.3 | 5.0e-25 | 0.73 | 0.07 | 0.92 | FALSE |
26 | GTEx | Breast Mammary Tissue | RAB7L1 | 0.15 | 0.15 | lasso | 5 | 0.16 | 1.5e-08 | 5.9 | -6.8 | 1.4e-11 | -0.66 | 0.04 | 0.96 | FALSE |
27 | GTEx | Cells EBV-transformed lymphocytes | CD46 | 0.33 | 0.25 | lasso | 4 | 0.24 | 3.2e-08 | 5.2 | -5.2 | 1.6e-07 | 0.03 | 0.02 | 0.97 | FALSE |
28 | GTEx | Cells Transformed fibroblasts | RAB7L1 | 0.30 | 0.23 | enet | 19 | 0.36 | 8.6e-28 | 6.1 | -9.8 | 1.3e-22 | -0.86 | 0.02 | 0.98 | FALSE |
29 | GTEx | Colon Sigmoid | NUCKS1 | 0.34 | 0.22 | enet | 20 | 0.21 | 8.3e-08 | -10.1 | 10.6 | 2.4e-26 | 0.70 | 0.19 | 0.79 | FALSE |
30 | GTEx | Colon Sigmoid | CD46 | 0.29 | 0.23 | lasso | 2 | 0.21 | 7.6e-08 | 5.2 | -5.2 | 2.0e-07 | 0.05 | 0.03 | 0.97 | FALSE |
31 | GTEx | Colon Transverse | RAB7L1 | 0.14 | 0.05 | lasso | 5 | 0.04 | 7.7e-03 | 6.4 | -7.4 | 1.0e-13 | -0.71 | 0.06 | 0.64 | FALSE |
32 | GTEx | Esophagus Gastroesophageal Junction | CD46 | 0.29 | 0.24 | lasso | 4 | 0.22 | 2.1e-08 | 5.2 | -5.3 | 8.7e-08 | 0.05 | 0.03 | 0.97 | FALSE |
33 | GTEx | Esophagus Gastroesophageal Junction | SNRPE | 0.26 | 0.03 | enet | 31 | 0.08 | 7.1e-04 | 7.3 | 7.1 | 1.5e-12 | 0.04 | 0.05 | 0.70 | FALSE |
34 | GTEx | Esophagus Mucosa | NUCKS1 | 0.12 | 0.11 | enet | 6 | 0.06 | 7.2e-05 | 12.7 | 12.1 | 1.2e-33 | 0.97 | 0.00 | 1.00 | FALSE |
35 | GTEx | Esophagus Mucosa | RAB7L1 | 0.26 | 0.11 | enet | 34 | 0.18 | 4.5e-12 | 12.7 | -8.6 | 1.2e-17 | -0.71 | 0.01 | 0.99 | FALSE |
36 | GTEx | Esophagus Mucosa | SLC41A1 | 0.17 | 0.09 | enet | 25 | 0.12 | 1.1e-08 | -8.3 | -6.2 | 4.0e-10 | -0.50 | 0.82 | 0.10 | FALSE |
37 | GTEx | Esophagus Muscularis | NUCKS1 | 0.21 | 0.22 | lasso | 5 | 0.20 | 3.6e-12 | -10.1 | 10.9 | 7.1e-28 | 0.80 | 0.64 | 0.36 | FALSE |
38 | GTEx | Esophagus Muscularis | RAB7L1 | 0.27 | 0.30 | lasso | 4 | 0.33 | 9.4e-21 | 5.9 | -9.8 | 1.2e-22 | -0.85 | 0.03 | 0.97 | FALSE |
39 | GTEx | Esophagus Muscularis | CD46 | 0.37 | 0.27 | lasso | 12 | 0.28 | 1.5e-17 | 5.2 | -5.5 | 3.4e-08 | 0.04 | 0.02 | 0.97 | TRUE |
40 | GTEx | Esophagus Muscularis | SNRPE | 0.23 | 0.09 | lasso | 3 | 0.05 | 4.9e-04 | 7.2 | 7.4 | 1.3e-13 | 0.02 | 0.06 | 0.93 | FALSE |
41 | GTEx | Esophagus Muscularis | MDM4 | 0.14 | 0.05 | lasso | 4 | 0.05 | 8.6e-04 | -5.4 | -5.8 | 6.9e-09 | -0.02 | 0.03 | 0.97 | FALSE |
42 | GTEx | Heart Atrial Appendage | NUCKS1 | 0.12 | 0.14 | enet | 4 | 0.08 | 1.7e-04 | 12.7 | 12.8 | 1.0e-37 | 0.98 | 0.00 | 0.99 | TRUE |
43 | GTEx | Heart Atrial Appendage | RAB7L1 | 0.20 | 0.17 | enet | 12 | 0.14 | 4.9e-07 | 12.7 | -11.2 | 2.5e-29 | -0.93 | 0.00 | 1.00 | FALSE |
44 | GTEx | Heart Atrial Appendage | SNRPE | 0.31 | -0.01 | enet | 45 | 0.04 | 5.2e-03 | 2.6 | 7.1 | 1.3e-12 | -0.03 | 0.06 | 0.17 | FALSE |
45 | GTEx | Heart Left Ventricle | NUCKS1 | 0.10 | 0.04 | lasso | 3 | 0.05 | 1.4e-03 | -10.1 | 10.7 | 6.8e-27 | 0.74 | 0.14 | 0.50 | FALSE |
46 | GTEx | Heart Left Ventricle | RAB7L1 | 0.33 | 0.09 | lasso | 10 | 0.22 | 4.8e-12 | 5.9 | -8.3 | 8.5e-17 | -0.78 | 0.03 | 0.97 | FALSE |
47 | GTEx | Lung | NUCKS1 | 0.09 | 0.07 | lasso | 3 | 0.04 | 2.6e-04 | -10.6 | 10.4 | 3.4e-25 | 0.75 | 0.05 | 0.95 | FALSE |
48 | GTEx | Lung | RAB7L1 | 0.34 | 0.19 | enet | 53 | 0.31 | 7.5e-24 | 5.9 | -9.8 | 8.2e-23 | -0.79 | 0.10 | 0.90 | FALSE |
49 | GTEx | Muscle Skeletal | RAB7L1 | 0.16 | 0.14 | lasso | 8 | 0.15 | 2.9e-14 | 6.0 | -8.0 | 1.4e-15 | -0.73 | 0.94 | 0.06 | FALSE |
50 | GTEx | Muscle Skeletal | ELK4 | 0.06 | 0.04 | lasso | 3 | 0.06 | 8.0e-07 | -3.1 | 6.8 | 9.1e-12 | 0.31 | 0.18 | 0.09 | FALSE |
51 | GTEx | Nerve Tibial | NUCKS1 | 0.25 | 0.21 | enet | 16 | 0.22 | 7.3e-16 | -10.5 | 10.9 | 1.2e-27 | 0.79 | 0.99 | 0.01 | FALSE |
52 | GTEx | Nerve Tibial | RAB7L1 | 0.35 | 0.14 | enet | 68 | 0.22 | 1.8e-15 | 6.4 | -9.9 | 5.4e-23 | -0.75 | 0.04 | 0.96 | FALSE |
53 | GTEx | Nerve Tibial | SLC41A1 | 0.12 | 0.02 | lasso | 4 | 0.05 | 2.5e-04 | -8.3 | -8.3 | 1.5e-16 | -0.73 | 0.13 | 0.82 | FALSE |
54 | GTEx | Nerve Tibial | MDM4 | 0.11 | 0.09 | lasso | 1 | 0.07 | 1.6e-05 | -6.2 | -6.2 | 5.6e-10 | -0.03 | 0.02 | 0.98 | FALSE |
55 | GTEx | Pancreas | NUCKS1 | 0.16 | 0.00 | lasso | 4 | 0.00 | 4.5e-01 | 11.5 | 10.8 | 5.0e-27 | 0.86 | 0.04 | 0.67 | FALSE |
56 | GTEx | Pancreas | RAB7L1 | 0.18 | 0.06 | enet | 12 | 0.06 | 1.1e-03 | 12.7 | -8.7 | 2.3e-18 | -0.73 | 0.01 | 0.97 | FALSE |
57 | GTEx | Pancreas | SLC41A1 | 0.24 | 0.21 | lasso | 5 | 0.19 | 1.4e-08 | -8.3 | -8.4 | 6.1e-17 | -0.71 | 0.51 | 0.46 | FALSE |
58 | GTEx | Pituitary | NUCKS1 | 0.26 | 0.19 | lasso | 2 | 0.20 | 7.6e-06 | -10.1 | 10.7 | 1.4e-26 | 0.76 | 0.06 | 0.84 | FALSE |
59 | GTEx | Prostate | NUCKS1 | 0.38 | 0.23 | lasso | 8 | 0.32 | 7.5e-09 | 3.8 | -7.3 | 2.4e-13 | -0.69 | 0.03 | 0.92 | FALSE |
60 | GTEx | Skin Not Sun Exposed Suprapubic | NUCKS1 | 0.20 | 0.14 | lasso | 4 | 0.13 | 2.0e-07 | -10.6 | 10.5 | 5.8e-26 | 0.77 | 0.05 | 0.95 | FALSE |
61 | GTEx | Skin Not Sun Exposed Suprapubic | RAB7L1 | 0.21 | 0.16 | enet | 17 | 0.17 | 1.8e-09 | 6.0 | -7.4 | 1.4e-13 | -0.71 | 0.17 | 0.83 | FALSE |
62 | GTEx | Skin Sun Exposed Lower leg | NUCKS1 | 0.20 | 0.26 | lasso | 5 | 0.26 | 1.5e-21 | -10.6 | 10.6 | 3.7e-26 | 0.77 | 1.00 | 0.00 | FALSE |
63 | GTEx | Skin Sun Exposed Lower leg | RAB7L1 | 0.18 | 0.20 | lasso | 3 | 0.22 | 2.1e-18 | 6.0 | -7.2 | 7.9e-13 | -0.71 | 0.85 | 0.15 | FALSE |
64 | GTEx | Skin Sun Exposed Lower leg | SLC45A3 | 0.08 | 0.00 | lasso | 5 | 0.00 | 3.6e-01 | 12.7 | 10.1 | 5.5e-24 | 0.85 | 0.01 | 0.94 | FALSE |
65 | GTEx | Spleen | NUCKS1 | 0.24 | 0.04 | enet | 44 | 0.10 | 1.6e-03 | -8.3 | 6.4 | 1.2e-10 | 0.38 | 0.06 | 0.47 | FALSE |
66 | GTEx | Spleen | RAB7L1 | 0.31 | 0.00 | lasso | 7 | 0.00 | 2.8e-01 | 4.6 | -6.6 | 3.8e-11 | -0.57 | 0.08 | 0.28 | FALSE |
67 | GTEx | Stomach | NUCKS1 | 0.21 | 0.11 | lasso | 8 | 0.15 | 1.1e-07 | -10.1 | 10.3 | 4.9e-25 | 0.79 | 0.21 | 0.78 | FALSE |
68 | GTEx | Stomach | RAB7L1 | 0.22 | 0.11 | lasso | 5 | 0.12 | 2.7e-06 | 6.4 | -7.6 | 3.0e-14 | -0.73 | 0.07 | 0.91 | FALSE |
69 | GTEx | Testis | NUCKS1 | 0.16 | 0.16 | enet | 15 | 0.16 | 1.3e-07 | -10.0 | 10.6 | 5.0e-26 | 0.78 | 0.44 | 0.54 | FALSE |
70 | GTEx | Testis | RAB7L1 | 0.41 | 0.21 | lasso | 13 | 0.26 | 9.2e-12 | 6.0 | -9.1 | 1.2e-19 | -0.78 | 0.27 | 0.73 | FALSE |
71 | GTEx | Thyroid | NUCKS1 | 0.26 | 0.16 | lasso | 6 | 0.19 | 1.8e-14 | -10.6 | 11.9 | 1.5e-32 | 0.90 | 0.06 | 0.94 | FALSE |
72 | GTEx | Thyroid | RAB7L1 | 0.23 | 0.15 | lasso | 6 | 0.15 | 1.3e-11 | 6.0 | -7.1 | 9.5e-13 | -0.68 | 0.29 | 0.71 | FALSE |
73 | GTEx | Thyroid | SLC41A1 | 0.06 | 0.00 | enet | 10 | 0.02 | 1.5e-02 | -8.3 | -6.0 | 1.7e-09 | -0.51 | 0.06 | 0.47 | FALSE |
74 | GTEx | Whole Blood | RAB7L1 | 0.14 | 0.11 | lasso | 5 | 0.10 | 3.1e-09 | 4.6 | -6.9 | 4.1e-12 | -0.60 | 0.79 | 0.21 | FALSE |
75 | METSIM | Adipose | NUCKS1 | 0.05 | 0.02 | lasso | 6 | 0.01 | 4.3e-03 | -10.0 | 10.3 | 5.1e-25 | 0.84 | 0.06 | 0.90 | FALSE |
76 | METSIM | Adipose | PM20D1 | 0.25 | 0.30 | bslmm | 377 | 0.31 | 8.4e-47 | -8.3 | 7.0 | 3.7e-12 | 0.64 | 1.00 | 0.00 | FALSE |
77 | METSIM | Adipose | RAB7L1 | 0.08 | 0.04 | bslmm | 401 | 0.05 | 8.6e-08 | 12.8 | -8.8 | 2.1e-18 | -0.76 | 0.00 | 1.00 | FALSE |
78 | NTR | Blood | RAB7L1 | 0.03 | 0.01 | bslmm | 385 | 0.02 | 1.9e-07 | 6.3 | -8.7 | 2.7e-18 | -0.65 | 0.03 | 0.97 | FALSE |
79 | YFS | Blood | ATP2B4 | 0.13 | 0.08 | lasso | 5 | 0.08 | 1.0e-24 | 5.7 | 5.5 | 3.2e-08 | 0.01 | 1.00 | 0.00 | FALSE |
80 | YFS | Blood | MDM4 | 0.12 | 0.08 | bslmm | 636 | 0.12 | 2.0e-36 | 3.9 | 5.6 | 1.9e-08 | 0.04 | 1.00 | 0.00 | FALSE |
81 | YFS | Blood | NUCKS1 | 0.15 | 0.24 | lasso | 4 | 0.25 | 1.4e-80 | -10.6 | 11.7 | 8.4e-32 | 0.89 | 1.00 | 0.00 | FALSE |
82 | YFS | Blood | RAB7L1 | 0.06 | 0.07 | lasso | 6 | 0.06 | 1.1e-19 | 12.8 | -12.2 | 3.2e-34 | -0.97 | 0.00 | 1.00 | FALSE |
83 | YFS | Blood | SLC41A1 | 0.06 | 0.05 | enet | 15 | 0.05 | 2.6e-17 | -9.4 | -8.6 | 8.5e-18 | -0.67 | 1.00 | 0.00 | FALSE |
84 | YFS | Blood | YOD1 | 0.02 | 0.02 | lasso | 4 | 0.02 | 5.1e-06 | 5.5 | -5.6 | 2.0e-08 | -0.01 | 0.03 | 0.97 | TRUE |
85 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | PM20D1 | 0.22 | 0.26 | lasso | 5 | 0.26 | 1.7e-22 | -9.4 | 8.2 | 1.9e-16 | 0.69 | 0.00 | 1.00 | FALSE |
86 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | RAB7L1 | 0.11 | 0.07 | blup | 46 | 0.07 | 1.4e-06 | 8.0 | -8.6 | 1.2e-17 | -0.73 | 0.01 | 0.99 | FALSE |
87 | The Cancer Genome Atlas | Breast Invasive Carcinoma | PM20D1 | 0.24 | 0.37 | lasso | 5 | 0.39 | 4.9e-85 | -8.3 | 7.1 | 1.5e-12 | 0.63 | 0.90 | 0.10 | FALSE |
88 | The Cancer Genome Atlas | Breast Invasive Carcinoma | RAB7L1 | 0.02 | 0.02 | enet | 5 | 0.02 | 3.1e-04 | 6.4 | -9.5 | 2.0e-21 | -0.82 | 0.01 | 0.98 | FALSE |
89 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | PM20D1 | 0.18 | 0.19 | blup | 47 | 0.18 | 1.9e-09 | -8.3 | 6.5 | 1.1e-10 | 0.54 | 0.01 | 0.99 | FALSE |
90 | The Cancer Genome Atlas | Colon Adenocarcinoma | PM20D1 | 0.26 | 0.13 | enet | 14 | 0.16 | 9.7e-10 | 3.8 | 5.3 | 1.3e-07 | 0.52 | 0.04 | 0.96 | FALSE |
91 | The Cancer Genome Atlas | Colon Adenocarcinoma | RAB7L1 | 0.17 | 0.14 | blup | 46 | 0.14 | 1.7e-08 | -10.0 | -9.2 | 3.2e-20 | -0.78 | 0.12 | 0.88 | FALSE |
92 | The Cancer Genome Atlas | Esophageal Carcinoma | RAB7L1 | 0.14 | 0.03 | blup | 46 | 0.07 | 2.5e-03 | 4.3 | -7.3 | 3.2e-13 | -0.66 | 0.02 | 0.51 | FALSE |
93 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | PFKFB2 | 0.06 | 0.01 | blup | 57 | 0.04 | 5.1e-05 | 5.7 | -5.6 | 2.0e-08 | -0.03 | 0.03 | 0.95 | FALSE |
94 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | PM20D1 | 0.19 | 0.25 | lasso | 5 | 0.25 | 3.0e-28 | -8.3 | 7.8 | 6.0e-15 | 0.68 | 0.00 | 1.00 | FALSE |
95 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | RAB7L1 | 0.09 | 0.13 | lasso | 6 | 0.13 | 3.6e-14 | 8.0 | -9.2 | 3.9e-20 | -0.81 | 0.35 | 0.65 | FALSE |
96 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | SLC45A3 | 0.08 | 0.00 | blup | 80 | 0.03 | 5.5e-04 | 3.5 | -9.9 | 4.3e-23 | -0.53 | 0.01 | 0.84 | FALSE |
97 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PM20D1 | 0.29 | 0.35 | enet | 18 | 0.35 | 5.1e-41 | -8.3 | 6.9 | 5.0e-12 | 0.65 | 0.53 | 0.47 | FALSE |
98 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | RAB7L1 | 0.09 | 0.08 | enet | 11 | 0.08 | 1.7e-09 | 12.8 | -9.6 | 1.1e-21 | -0.89 | 0.00 | 1.00 | TRUE |
99 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SNRPE | 0.06 | 0.06 | lasso | 3 | 0.05 | 2.3e-06 | 7.3 | 7.6 | 3.2e-14 | 0.02 | 0.13 | 0.85 | FALSE |
100 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | PM20D1 | 0.19 | 0.19 | enet | 4 | 0.19 | 4.5e-11 | -8.3 | 8.4 | 6.0e-17 | 0.70 | 0.00 | 1.00 | FALSE |
101 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | SNRPE | 0.06 | 0.03 | blup | 31 | 0.03 | 5.2e-03 | 7.2 | 8.6 | 6.4e-18 | 0.04 | 0.01 | 0.70 | TRUE |
102 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CD46 | 0.10 | 0.12 | lasso | 4 | 0.12 | 5.6e-14 | 5.2 | -5.2 | 2.0e-07 | 0.05 | 0.01 | 0.99 | FALSE |
103 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PM20D1 | 0.41 | 0.43 | enet | 20 | 0.44 | 9.2e-55 | -8.3 | 7.8 | 5.9e-15 | 0.65 | 0.42 | 0.57 | FALSE |
104 | The Cancer Genome Atlas | Brain Lower Grade Glioma | RAB7L1 | 0.09 | 0.08 | lasso | 2 | 0.07 | 1.1e-08 | 12.8 | -12.8 | 2.3e-37 | -1.00 | 0.00 | 1.00 | FALSE |
105 | The Cancer Genome Atlas | Brain Lower Grade Glioma | SNRPE | 0.06 | 0.03 | blup | 30 | 0.06 | 9.8e-08 | 8.1 | 5.8 | 6.3e-09 | 0.07 | 0.02 | 0.98 | FALSE |
106 | The Cancer Genome Atlas | Lung Adenocarcinoma | PM20D1 | 0.31 | 0.39 | enet | 16 | 0.41 | 5.1e-52 | -8.3 | 7.7 | 1.1e-14 | 0.67 | 0.00 | 1.00 | FALSE |
107 | The Cancer Genome Atlas | Lung Adenocarcinoma | RAB7L1 | 0.02 | 0.02 | enet | 5 | 0.03 | 4.6e-04 | 8.0 | -6.7 | 2.3e-11 | -0.69 | 0.02 | 0.70 | FALSE |
108 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | PM20D1 | 0.26 | 0.34 | lasso | 3 | 0.34 | 1.9e-40 | -8.3 | 6.9 | 5.3e-12 | 0.63 | 0.40 | 0.60 | FALSE |
109 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | RAB7L1 | 0.06 | 0.05 | enet | 6 | 0.06 | 2.6e-07 | 6.4 | -7.1 | 1.4e-12 | -0.67 | 0.53 | 0.43 | FALSE |
110 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | PM20D1 | 0.12 | 0.13 | blup | 47 | 0.12 | 9.1e-09 | -8.3 | 6.5 | 6.1e-11 | 0.53 | 0.01 | 0.99 | FALSE |
111 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | RAB7L1 | 0.06 | 0.06 | blup | 46 | 0.06 | 5.2e-05 | -10.1 | -9.8 | 1.1e-22 | -0.81 | 0.12 | 0.83 | FALSE |
112 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | PM20D1 | 0.32 | 0.34 | lasso | 2 | 0.34 | 9.7e-15 | -9.4 | 9.1 | 6.9e-20 | 0.73 | 0.00 | 1.00 | FALSE |
113 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | RAB7L1 | 0.09 | 0.04 | blup | 46 | 0.04 | 1.2e-02 | 12.8 | -11.1 | 1.1e-28 | -0.90 | 0.00 | 0.97 | FALSE |
114 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | RAB7L1 | 0.17 | 0.13 | lasso | 2 | 0.11 | 4.4e-05 | 12.7 | -12.8 | 2.8e-37 | -1.00 | 0.00 | 0.99 | FALSE |
115 | The Cancer Genome Atlas | Prostate Adenocarcinoma | ELK4 | 0.06 | 0.00 | blup | 81 | 0.02 | 1.8e-03 | 3.5 | -6.8 | 1.1e-11 | -0.45 | 0.00 | 0.79 | FALSE |
116 | The Cancer Genome Atlas | Prostate Adenocarcinoma | NUCKS1 | 0.04 | 0.05 | lasso | 2 | 0.03 | 1.5e-04 | -10.1 | 9.8 | 7.1e-23 | 0.76 | 0.33 | 0.41 | FALSE |
117 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PM20D1 | 0.16 | 0.14 | enet | 15 | 0.16 | 5.6e-16 | -8.3 | 6.4 | 1.6e-10 | 0.58 | 0.04 | 0.96 | FALSE |
118 | The Cancer Genome Atlas | Prostate Adenocarcinoma | RAB7L1 | 0.12 | 0.12 | lasso | 2 | 0.12 | 3.8e-12 | 12.7 | -12.2 | 5.5e-34 | -0.98 | 0.00 | 1.00 | FALSE |
119 | The Cancer Genome Atlas | Rectum Adenocarcinoma | PM20D1 | 0.17 | 0.02 | blup | 47 | 0.01 | 2.2e-01 | -9.4 | 6.9 | 5.8e-12 | 0.53 | 0.00 | 0.76 | FALSE |
120 | The Cancer Genome Atlas | Soft Tissue Sarcoma | PM20D1 | 0.23 | 0.24 | lasso | 4 | 0.24 | 1.2e-14 | -8.3 | 7.7 | 1.8e-14 | 0.69 | 0.00 | 1.00 | FALSE |
121 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | PM20D1 | 0.17 | 0.11 | lasso | 3 | 0.07 | 5.0e-03 | -8.3 | 8.1 | 6.1e-16 | 0.70 | 0.00 | 0.85 | FALSE |
122 | The Cancer Genome Atlas | Stomach Adenocarcinoma | RAB7L1 | 0.07 | 0.04 | blup | 46 | 0.07 | 1.2e-05 | -9.4 | -9.9 | 3.4e-23 | -0.86 | 0.00 | 0.99 | FALSE |
123 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | PM20D1 | 0.42 | 0.34 | lasso | 3 | 0.34 | 6.9e-13 | -8.3 | 8.5 | 2.5e-17 | 0.70 | 0.02 | 0.98 | FALSE |
124 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | SLC41A1 | 0.13 | 0.03 | blup | 55 | 0.03 | 2.6e-02 | -10.0 | 9.2 | 3.3e-20 | 0.64 | 0.06 | 0.35 | FALSE |
125 | The Cancer Genome Atlas | Thyroid Carcinoma | MDM4 | 0.05 | 0.06 | lasso | 1 | 0.04 | 1.6e-04 | -6.2 | -6.2 | 5.6e-10 | -0.03 | 0.03 | 0.97 | FALSE |
126 | The Cancer Genome Atlas | Thyroid Carcinoma | NUCKS1 | 0.07 | 0.07 | blup | 59 | 0.07 | 1.3e-07 | -10.6 | 8.2 | 1.7e-16 | 0.63 | 0.93 | 0.07 | FALSE |
127 | The Cancer Genome Atlas | Thyroid Carcinoma | PM20D1 | 0.26 | 0.40 | lasso | 4 | 0.41 | 2.0e-42 | -8.3 | 7.8 | 4.1e-15 | 0.68 | 0.01 | 0.99 | FALSE |
128 | The Cancer Genome Atlas | Thyroid Carcinoma | RAB7L1 | 0.13 | 0.17 | enet | 15 | 0.21 | 3.6e-20 | 12.7 | -10.9 | 9.0e-28 | -0.91 | 0.01 | 0.99 | FALSE |
129 | The Cancer Genome Atlas | Thyroid Carcinoma | SNRPE | 0.04 | 0.03 | lasso | 4 | 0.02 | 2.1e-03 | 7.3 | 7.5 | 5.7e-14 | 0.03 | 0.02 | 0.85 | FALSE |
130 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | NUCKS1 | 0.11 | 0.02 | blup | 58 | 0.09 | 1.9e-03 | 6.4 | 9.9 | 6.2e-23 | 0.81 | 0.02 | 0.60 | FALSE |
131 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | PM20D1 | 0.19 | 0.09 | lasso | 4 | 0.12 | 4.2e-04 | -9.4 | 8.0 | 8.7e-16 | 0.65 | 0.00 | 0.96 | FALSE |