Best TWAS P=7.37e-12 · Best GWAS P=1.15e-11 conditioned to 0.898
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ATP6V0D1 | 0.10 | 0.12 | lasso | 8 | 0.11 | 2.4e-13 | -5.1 | 6.2 | 7.4e-10 | -0.85 | 0.10 | 0.90 | FALSE |
2 | GTEx | Adipose Subcutaneous | RANBP10 | 0.05 | 0.01 | lasso | 6 | 0.01 | 3.5e-02 | -5.7 | 5.9 | 3.5e-09 | -0.81 | 0.20 | 0.68 | FALSE |
3 | GTEx | Artery Tibial | RANBP10 | 0.08 | 0.04 | lasso | 3 | 0.05 | 6.4e-05 | -6.6 | 6.8 | 1.0e-11 | -0.91 | 0.08 | 0.91 | FALSE |
4 | GTEx | Brain Cerebellar Hemisphere | ELMO3 | 0.60 | 0.48 | lasso | 3 | 0.51 | 4.8e-15 | -5.9 | 5.4 | 8.8e-08 | -0.16 | 0.79 | 0.21 | FALSE |
5 | GTEx | Brain Cerebellum | PRMT7 | 0.37 | 0.16 | enet | 25 | 0.23 | 2.2e-07 | 3.0 | -5.2 | 2.5e-07 | 0.25 | 0.35 | 0.38 | FALSE |
6 | GTEx | Brain Nucleus accumbens basal ganglia | CTCF | 0.11 | 0.03 | lasso | 5 | 0.04 | 2.4e-02 | -6.2 | -5.8 | 7.5e-09 | 0.73 | 0.08 | 0.44 | FALSE |
7 | GTEx | Esophagus Mucosa | SLC7A6 | 0.09 | 0.00 | enet | 12 | 0.00 | 1.4e-01 | -3.8 | 5.1 | 2.8e-07 | -0.16 | 0.13 | 0.12 | TRUE |
8 | GTEx | Esophagus Muscularis | RANBP10 | 0.13 | 0.05 | lasso | 4 | 0.02 | 2.3e-02 | -6.7 | 6.8 | 1.2e-11 | -0.88 | 0.04 | 0.94 | FALSE |
9 | GTEx | Muscle Skeletal | C16orf86 | 0.05 | 0.04 | lasso | 2 | 0.03 | 4.0e-04 | -6.3 | 6.4 | 1.4e-10 | -0.80 | 0.08 | 0.66 | FALSE |
10 | GTEx | Nerve Tibial | RANBP10 | 0.15 | 0.14 | lasso | 7 | 0.13 | 1.8e-09 | -6.5 | 6.8 | 8.1e-12 | -0.87 | 0.12 | 0.88 | FALSE |
11 | GTEx | Pituitary | ZDHHC1 | 0.23 | 0.13 | lasso | 4 | 0.08 | 4.0e-03 | -6.3 | -6.2 | 5.3e-10 | 0.73 | 0.05 | 0.44 | FALSE |
12 | GTEx | Skin Not Sun Exposed Suprapubic | CTRL | 0.13 | 0.04 | lasso | 9 | 0.08 | 2.7e-05 | -5.8 | -5.4 | 7.3e-08 | 0.68 | 0.22 | 0.74 | FALSE |
13 | GTEx | Spleen | ATP6V0D1 | 0.36 | 0.03 | enet | 9 | 0.07 | 6.0e-03 | -3.7 | 6.2 | 5.3e-10 | -0.84 | 0.02 | 0.47 | FALSE |
14 | GTEx | Testis | DUS2 | 0.15 | 0.01 | enet | 9 | 0.03 | 1.1e-02 | 1.0 | 5.1 | 2.6e-07 | -0.60 | 0.10 | 0.69 | FALSE |
15 | GTEx | Thyroid | RANBP10 | 0.08 | 0.03 | lasso | 4 | 0.03 | 2.2e-03 | -5.8 | 6.3 | 2.4e-10 | -0.87 | 0.12 | 0.56 | FALSE |
16 | GTEx | Thyroid | ZDHHC1 | 0.07 | 0.03 | lasso | 6 | 0.02 | 1.6e-02 | -6.5 | -6.4 | 1.6e-10 | 0.97 | 0.06 | 0.83 | FALSE |
17 | GTEx | Thyroid | HSD11B2 | 0.15 | 0.07 | enet | 23 | 0.09 | 1.9e-07 | -5.8 | -6.9 | 7.4e-12 | 0.88 | 0.17 | 0.83 | TRUE |
18 | GTEx | Whole Blood | ATP6V0D1 | 0.08 | 0.00 | enet | 13 | 0.00 | 3.6e-01 | -5.2 | 6.5 | 6.4e-11 | -0.84 | 0.02 | 0.90 | FALSE |
19 | GTEx | Whole Blood | DUS2 | 0.12 | 0.04 | enet | 10 | 0.05 | 4.0e-05 | -6.3 | -6.3 | 3.5e-10 | 0.74 | 0.04 | 0.96 | FALSE |
20 | METSIM | Adipose | CTCF | 0.03 | 0.02 | bslmm | 222 | 0.01 | 3.4e-03 | -6.4 | -5.6 | 2.6e-08 | 0.90 | 0.02 | 0.90 | FALSE |
21 | METSIM | Adipose | LRRC36 | 0.10 | 0.07 | lasso | 24 | 0.10 | 1.6e-14 | -6.4 | -6.5 | 9.5e-11 | 0.93 | 0.02 | 0.98 | FALSE |
22 | METSIM | Adipose | NFATC3 | 0.03 | 0.00 | blup | 298 | 0.00 | 3.4e-01 | 3.9 | 5.9 | 3.3e-09 | -0.50 | 0.04 | 0.47 | FALSE |
23 | METSIM | Adipose | RLTPR | 0.04 | 0.00 | bslmm | 211 | 0.00 | 1.1e-01 | -6.4 | -6.0 | 2.0e-09 | 0.83 | 0.03 | 0.80 | FALSE |
24 | NTR | Blood | ATP6V0D1 | 0.02 | 0.01 | bslmm | 220 | 0.01 | 1.6e-04 | -5.1 | 6.3 | 3.4e-10 | -0.74 | 0.12 | 0.79 | FALSE |
25 | YFS | Blood | ATP6V0D1 | 0.14 | 0.18 | lasso | 15 | 0.20 | 1.8e-63 | -6.8 | 6.6 | 5.3e-11 | -0.94 | 0.02 | 0.98 | FALSE |
26 | YFS | Blood | DUS2L | 0.19 | 0.23 | enet | 28 | 0.28 | 3.8e-91 | -2.5 | -5.1 | 2.7e-07 | 0.59 | 1.00 | 0.00 | FALSE |
27 | YFS | Blood | ZDHHC1 | 0.05 | 0.05 | enet | 26 | 0.05 | 1.8e-16 | -6.7 | -6.8 | 1.5e-11 | 0.88 | 0.02 | 0.98 | FALSE |
28 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ZDHHC1 | 0.02 | 0.01 | lasso | 1 | 0.01 | 2.4e-03 | -6.4 | 6.4 | 2.1e-10 | -0.97 | 0.02 | 0.70 | FALSE |
29 | The Cancer Genome Atlas | Colon Adenocarcinoma | CENPT | 0.05 | 0.05 | enet | 8 | 0.04 | 3.0e-03 | -5.8 | -5.3 | 1.1e-07 | 0.71 | 0.01 | 0.90 | FALSE |
30 | The Cancer Genome Atlas | Esophageal Carcinoma | CENPT | 0.13 | 0.00 | blup | 33 | 0.00 | 3.5e-01 | -4.0 | -5.9 | 3.7e-09 | 0.65 | 0.01 | 0.34 | FALSE |
31 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | GFOD2 | 0.03 | 0.03 | lasso | 1 | 0.03 | 3.6e-04 | -5.8 | 5.8 | 7.4e-09 | -0.75 | 0.01 | 0.98 | FALSE |
32 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ATP6V0D1 | 0.04 | 0.06 | lasso | 4 | 0.05 | 1.4e-06 | -5.2 | 5.4 | 5.3e-08 | -0.74 | 0.23 | 0.76 | FALSE |
33 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | TPPP3 | 0.03 | 0.02 | blup | 31 | 0.04 | 2.1e-05 | -6.6 | 6.4 | 1.9e-10 | -0.94 | 0.03 | 0.96 | FALSE |
34 | The Cancer Genome Atlas | Brain Lower Grade Glioma | LRRC36 | 0.07 | 0.03 | blup | 39 | 0.03 | 2.5e-04 | -6.7 | -5.8 | 5.7e-09 | 0.90 | 0.01 | 0.99 | FALSE |
35 | The Cancer Genome Atlas | Brain Lower Grade Glioma | RANBP10 | 0.04 | 0.03 | blup | 31 | 0.04 | 6.5e-05 | -5.8 | 5.9 | 4.3e-09 | -0.74 | 0.05 | 0.90 | FALSE |
36 | The Cancer Genome Atlas | Lung Adenocarcinoma | ATP6V0D1 | 0.04 | 0.02 | blup | 33 | 0.03 | 4.7e-04 | -5.1 | 6.2 | 5.4e-10 | -0.88 | 0.02 | 0.96 | FALSE |
37 | The Cancer Genome Atlas | Lung Adenocarcinoma | C16orf86 | 0.04 | 0.04 | lasso | 2 | 0.03 | 3.8e-04 | -6.2 | 6.0 | 1.7e-09 | -0.79 | 0.00 | 0.99 | FALSE |
38 | The Cancer Genome Atlas | Lung Adenocarcinoma | RLTPR | 0.03 | 0.02 | lasso | 3 | 0.02 | 1.8e-03 | -4.7 | 5.3 | 1.1e-07 | -0.80 | 0.00 | 0.84 | FALSE |
39 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | ATP6V0D1 | 0.04 | 0.00 | enet | 6 | 0.00 | 9.3e-02 | -5.2 | 5.2 | 2.6e-07 | -0.70 | 0.01 | 0.50 | FALSE |
40 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | NFATC3 | 0.23 | 0.05 | enet | 17 | 0.06 | 1.5e-03 | -6.2 | 5.7 | 1.6e-08 | -0.50 | 0.00 | 0.80 | FALSE |
41 | The Cancer Genome Atlas | Prostate Adenocarcinoma | C16orf86 | 0.05 | 0.05 | lasso | 1 | 0.04 | 2.9e-05 | -6.2 | 6.2 | 6.1e-10 | -0.79 | 0.00 | 1.00 | FALSE |
42 | The Cancer Genome Atlas | Prostate Adenocarcinoma | CENPT | 0.02 | 0.01 | blup | 33 | 0.01 | 6.9e-02 | -5.8 | -5.6 | 2.0e-08 | 0.72 | 0.02 | 0.71 | FALSE |
43 | The Cancer Genome Atlas | Rectum Adenocarcinoma | LRRC36 | 0.13 | 0.12 | lasso | 14 | 0.11 | 1.4e-03 | -6.4 | -6.4 | 1.3e-10 | 0.96 | 0.01 | 0.67 | FALSE |
44 | The Cancer Genome Atlas | Stomach Adenocarcinoma | AGRP | 0.04 | 0.02 | blup | 23 | 0.03 | 3.0e-03 | -6.7 | -6.0 | 1.5e-09 | 0.88 | 0.00 | 0.76 | FALSE |
45 | The Cancer Genome Atlas | Thyroid Carcinoma | LRRC36 | 0.04 | 0.04 | lasso | 3 | 0.04 | 1.5e-04 | -6.5 | -6.5 | 1.0e-10 | 0.97 | 0.03 | 0.96 | FALSE |
46 | The Cancer Genome Atlas | Thyroid Carcinoma | ZDHHC1 | 0.07 | 0.06 | enet | 7 | 0.07 | 2.9e-07 | -6.6 | -6.6 | 3.8e-11 | 0.96 | 0.02 | 0.98 | FALSE |