Best TWAS P=6.36e-42 · Best GWAS P=6.69e-32 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | C11orf49 | 0.40 | 0.19 | bslmm | 329 | 0.20 | 2.9e-23 | 4.75 | 6.2 | 7.4e-10 | -0.34 | 1.00 | 0.00 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | DDB2 | 0.03 | 0.02 | bslmm | 309 | 0.00 | 7.9e-02 | 6.62 | 9.0 | 1.7e-19 | -0.36 | 0.15 | 0.04 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | FAM180B | 0.07 | 0.08 | lasso | 3 | 0.08 | 9.1e-10 | -11.75 | -11.4 | 3.9e-30 | 0.95 | 0.01 | 0.99 | FALSE |
4 | CommonMind | Brain Pre-frontal Cortex | MTCH2 | 0.03 | 0.00 | bslmm | 299 | 0.00 | 1.1e-01 | -3.75 | -9.3 | 1.5e-20 | 0.68 | 0.07 | 0.53 | FALSE |
5 | CommonMind | Brain Pre-frontal Cortex | PSMC3 | 0.04 | 0.00 | enet | 22 | 0.01 | 3.8e-02 | 10.38 | -9.1 | 1.0e-19 | 0.51 | 0.09 | 0.40 | FALSE |
6 | GTEx | Adipose Subcutaneous | ACP2 | 0.08 | 0.03 | enet | 18 | 0.03 | 3.5e-03 | 6.78 | -10.2 | 3.0e-24 | 0.73 | 0.08 | 0.78 | FALSE |
7 | GTEx | Adipose Subcutaneous | PACSIN3 | 0.17 | 0.11 | lasso | 3 | 0.10 | 1.1e-08 | 7.63 | 7.3 | 3.9e-13 | -0.16 | 1.00 | 0.00 | FALSE |
8 | GTEx | Adipose Subcutaneous | C1QTNF4 | 0.16 | 0.22 | lasso | 4 | 0.22 | 2.5e-18 | -11.68 | 11.4 | 5.2e-30 | -0.97 | 0.00 | 1.00 | FALSE |
9 | GTEx | Adipose Subcutaneous | ATG13 | 0.06 | 0.02 | lasso | 3 | 0.00 | 1.5e-01 | 3.05 | -5.2 | 1.9e-07 | 0.14 | 0.08 | 0.24 | FALSE |
10 | GTEx | Artery Aorta | PACSIN3 | 0.10 | 0.04 | lasso | 4 | 0.03 | 1.1e-02 | 6.62 | 10.0 | 1.7e-23 | -0.30 | 0.35 | 0.08 | FALSE |
11 | GTEx | Artery Aorta | C1QTNF4 | 0.09 | 0.10 | lasso | 1 | 0.08 | 3.2e-05 | -11.75 | 11.8 | 6.7e-32 | -1.00 | 0.00 | 1.00 | FALSE |
12 | GTEx | Artery Tibial | LRP4 | 0.06 | 0.00 | lasso | 5 | 0.00 | 6.4e-01 | 8.30 | 5.8 | 5.4e-09 | -0.35 | 0.06 | 0.03 | FALSE |
13 | GTEx | Brain Cerebellar Hemisphere | MADD | 0.44 | 0.14 | lasso | 7 | 0.21 | 4.0e-06 | 6.78 | -6.2 | 4.3e-10 | 0.50 | 0.33 | 0.18 | FALSE |
14 | GTEx | Brain Cerebellum | MADD | 0.21 | 0.00 | enet | 13 | 0.11 | 3.3e-04 | 1.90 | -6.8 | 1.1e-11 | 0.62 | 0.07 | 0.68 | FALSE |
15 | GTEx | Brain Cerebellum | PACSIN3 | 0.27 | 0.00 | lasso | 12 | 0.01 | 2.2e-01 | 6.60 | 7.4 | 1.2e-13 | -0.23 | 0.09 | 0.08 | FALSE |
16 | GTEx | Brain Cortex | MTCH2 | 0.21 | 0.19 | lasso | 6 | 0.16 | 4.0e-05 | -8.75 | -7.3 | 2.3e-13 | 0.80 | 0.35 | 0.18 | FALSE |
17 | GTEx | Brain Cortex | C1QTNF4 | 0.26 | 0.04 | lasso | 8 | 0.02 | 1.2e-01 | 10.75 | 10.2 | 1.8e-24 | -0.79 | 0.02 | 0.58 | FALSE |
18 | GTEx | Brain Hypothalamus | NR1H3 | 0.25 | 0.18 | lasso | 5 | 0.10 | 2.7e-03 | 6.81 | 6.9 | 4.6e-12 | -0.41 | 0.14 | 0.12 | FALSE |
19 | GTEx | Brain Putamen basal ganglia | CKAP5 | 0.25 | 0.07 | lasso | 3 | 0.14 | 4.4e-04 | 1.02 | 5.9 | 3.8e-09 | -0.45 | 0.05 | 0.16 | FALSE |
20 | GTEx | Breast Mammary Tissue | C1QTNF4 | 0.10 | 0.06 | lasso | 2 | 0.03 | 8.5e-03 | -9.88 | 9.9 | 2.5e-23 | -0.82 | 0.10 | 0.70 | FALSE |
21 | GTEx | Breast Mammary Tissue (Female) | MADD | 0.13 | 0.04 | lasso | 3 | 0.05 | 1.3e-02 | -9.89 | -9.7 | 3.8e-22 | 0.81 | 0.06 | 0.26 | FALSE |
22 | GTEx | Breast Mammary Tissue (Female) | PSMC3 | 0.02 | 0.01 | lasso | 1 | 0.04 | 2.5e-02 | 8.64 | -8.6 | 5.5e-18 | 0.54 | 0.02 | 0.21 | FALSE |
23 | GTEx | Cells EBV-transformed lymphocytes | LRP4 | 0.68 | 0.00 | lasso | 10 | 0.00 | 5.0e-01 | -7.43 | -6.8 | 1.5e-11 | 0.12 | 0.03 | 0.08 | TRUE |
24 | GTEx | Cells Transformed fibroblasts | FNBP4 | 0.11 | 0.05 | lasso | 8 | 0.08 | 1.6e-06 | 10.51 | -11.2 | 2.4e-29 | 0.88 | 0.04 | 0.96 | FALSE |
25 | GTEx | Cells Transformed fibroblasts | PSMC3 | 0.07 | 0.00 | enet | 13 | 0.02 | 2.3e-02 | 8.64 | -11.7 | 1.8e-31 | 0.83 | 0.03 | 0.77 | FALSE |
26 | GTEx | Cells Transformed fibroblasts | C1QTNF4 | 0.13 | 0.11 | enet | 19 | 0.12 | 5.2e-09 | -9.35 | 10.2 | 1.6e-24 | -0.84 | 0.02 | 0.98 | FALSE |
27 | GTEx | Cells Transformed fibroblasts | NDUFS3 | 0.08 | 0.01 | lasso | 2 | 0.01 | 3.3e-02 | -11.68 | 12.8 | 2.4e-37 | -0.97 | 0.00 | 0.97 | FALSE |
28 | GTEx | Colon Transverse | C1QTNF4 | 0.07 | 0.02 | lasso | 6 | 0.03 | 2.0e-02 | -11.68 | 11.0 | 6.6e-28 | -0.96 | 0.01 | 0.96 | FALSE |
29 | GTEx | Esophagus Gastroesophageal Junction | CKAP5 | 0.11 | 0.04 | lasso | 3 | 0.03 | 2.1e-02 | 4.59 | 6.7 | 2.4e-11 | -0.29 | 0.28 | 0.08 | FALSE |
30 | GTEx | Esophagus Mucosa | PACSIN3 | 0.24 | 0.19 | lasso | 8 | 0.21 | 7.5e-14 | 7.86 | 9.2 | 4.4e-20 | -0.29 | 1.00 | 0.00 | FALSE |
31 | GTEx | Esophagus Mucosa | C1QTNF4 | 0.10 | 0.11 | lasso | 1 | 0.10 | 5.0e-07 | -11.75 | 11.8 | 6.7e-32 | -1.00 | 0.00 | 1.00 | FALSE |
32 | GTEx | Esophagus Muscularis | MTCH2 | 0.09 | 0.04 | lasso | 6 | 0.02 | 1.8e-02 | -9.35 | -7.7 | 1.7e-14 | 0.78 | 0.28 | 0.50 | FALSE |
33 | GTEx | Esophagus Muscularis | PACSIN3 | 0.15 | 0.06 | lasso | 2 | 0.04 | 2.0e-03 | 7.45 | 7.6 | 3.9e-14 | -0.19 | 0.33 | 0.08 | FALSE |
34 | GTEx | Esophagus Muscularis | C1QTNF4 | 0.10 | 0.05 | enet | 23 | 0.06 | 1.4e-04 | -11.68 | 13.1 | 5.7e-39 | -0.93 | 0.01 | 0.99 | FALSE |
35 | GTEx | Heart Atrial Appendage | C1QTNF4 | 0.26 | 0.14 | lasso | 9 | 0.17 | 3.9e-08 | -11.75 | 11.8 | 6.9e-32 | -0.95 | 0.01 | 0.99 | FALSE |
36 | GTEx | Heart Left Ventricle | MADD | 0.14 | 0.01 | enet | 17 | 0.05 | 7.0e-04 | 0.73 | -8.7 | 5.2e-18 | 0.70 | 0.02 | 0.96 | FALSE |
37 | GTEx | Heart Left Ventricle | C1QTNF4 | 0.10 | 0.11 | lasso | 1 | 0.09 | 1.1e-05 | -11.75 | 11.8 | 6.7e-32 | -1.00 | 0.00 | 0.99 | FALSE |
38 | GTEx | Liver | PSMC3 | 0.15 | 0.09 | lasso | 4 | 0.07 | 5.9e-03 | -7.55 | -7.8 | 6.4e-15 | 0.59 | 0.09 | 0.10 | FALSE |
39 | GTEx | Liver | C1QTNF4 | 0.25 | 0.14 | enet | 16 | 0.20 | 2.3e-06 | -11.75 | 7.3 | 3.9e-13 | -0.84 | 0.01 | 0.98 | FALSE |
40 | GTEx | Lung | ACP2 | 0.04 | 0.03 | lasso | 2 | 0.04 | 4.3e-04 | 7.94 | -5.8 | 6.4e-09 | 0.39 | 0.55 | 0.02 | FALSE |
41 | GTEx | Lung | PSMC3 | 0.07 | 0.02 | lasso | 2 | 0.03 | 3.6e-03 | 10.38 | -10.6 | 2.5e-26 | 0.34 | 0.18 | 0.08 | FALSE |
42 | GTEx | Lung | C1QTNF4 | 0.18 | 0.15 | lasso | 6 | 0.13 | 3.2e-10 | -9.76 | 10.4 | 1.7e-25 | -0.91 | 0.07 | 0.93 | FALSE |
43 | GTEx | Lung | ATG13 | 0.10 | 0.02 | enet | 15 | 0.02 | 1.6e-02 | 7.63 | -6.5 | 7.4e-11 | 0.16 | 0.20 | 0.21 | FALSE |
44 | GTEx | Muscle Skeletal | MTCH2 | 0.05 | 0.03 | enet | 15 | 0.04 | 1.5e-04 | -8.08 | -7.7 | 1.9e-14 | 0.84 | 0.05 | 0.94 | FALSE |
45 | GTEx | Muscle Skeletal | FNBP4 | 0.05 | 0.03 | lasso | 5 | 0.04 | 5.0e-05 | 1.38 | -5.7 | 1.3e-08 | 0.22 | 0.64 | 0.06 | FALSE |
46 | GTEx | Muscle Skeletal | SLC39A13 | 0.05 | 0.01 | lasso | 3 | 0.01 | 8.5e-02 | 10.38 | -10.0 | 1.1e-23 | 0.41 | 0.11 | 0.04 | FALSE |
47 | GTEx | Muscle Skeletal | C1QTNF4 | 0.09 | 0.14 | lasso | 3 | 0.13 | 9.9e-13 | -11.75 | 11.2 | 3.2e-29 | -0.99 | 0.00 | 1.00 | FALSE |
48 | GTEx | Nerve Tibial | NR1H3 | 0.10 | 0.00 | enet | 24 | 0.08 | 4.7e-06 | 3.80 | 6.1 | 8.2e-10 | -0.51 | 0.02 | 0.81 | FALSE |
49 | GTEx | Nerve Tibial | LRP4 | 0.28 | 0.24 | enet | 24 | 0.30 | 3.5e-21 | -7.43 | 6.3 | 3.1e-10 | -0.34 | 1.00 | 0.00 | FALSE |
50 | GTEx | Nerve Tibial | CELF1 | 0.08 | 0.02 | enet | 15 | 0.06 | 4.3e-05 | 4.68 | -6.0 | 1.5e-09 | 0.39 | 0.21 | 0.05 | FALSE |
51 | GTEx | Nerve Tibial | PACSIN3 | 0.09 | 0.08 | lasso | 4 | 0.07 | 1.1e-05 | 7.56 | 8.0 | 1.2e-15 | -0.22 | 0.80 | 0.01 | FALSE |
52 | GTEx | Nerve Tibial | SLC39A13 | 0.07 | 0.01 | enet | 14 | 0.02 | 7.6e-03 | -9.88 | -11.2 | 3.6e-29 | 0.70 | 0.13 | 0.32 | FALSE |
53 | GTEx | Nerve Tibial | C1QTNF4 | 0.20 | 0.23 | enet | 12 | 0.23 | 1.7e-16 | -11.75 | 11.3 | 8.6e-30 | -0.96 | 0.00 | 1.00 | FALSE |
54 | GTEx | Nerve Tibial | LRP4-AS1 | 0.23 | 0.16 | enet | 15 | 0.24 | 1.1e-16 | -7.43 | 5.3 | 1.4e-07 | -0.28 | 1.00 | 0.00 | FALSE |
55 | GTEx | Ovary | PACSIN3 | 0.23 | 0.13 | lasso | 11 | 0.16 | 8.3e-05 | 7.56 | 6.8 | 1.0e-11 | -0.10 | 0.08 | 0.06 | FALSE |
56 | GTEx | Pancreas | LRP4-AS1 | 0.10 | 0.08 | lasso | 6 | 0.12 | 1.4e-05 | 4.59 | -6.0 | 1.6e-09 | 0.25 | 0.78 | 0.01 | FALSE |
57 | GTEx | Pituitary | MADD | 0.42 | 0.32 | lasso | 6 | 0.39 | 8.9e-11 | 2.77 | -5.8 | 8.0e-09 | 0.60 | 0.25 | 0.62 | FALSE |
58 | GTEx | Prostate | PSMC3 | 0.21 | 0.10 | lasso | 6 | 0.20 | 7.9e-06 | 9.78 | -11.0 | 3.9e-28 | 0.49 | 0.14 | 0.15 | FALSE |
59 | GTEx | Skin Not Sun Exposed Suprapubic | LRP4 | 0.13 | 0.00 | lasso | 7 | 0.02 | 3.5e-02 | 4.51 | 11.0 | 3.9e-28 | -0.60 | 0.04 | 0.72 | TRUE |
60 | GTEx | Skin Not Sun Exposed Suprapubic | C11orf49 | 0.09 | 0.00 | enet | 12 | 0.03 | 6.0e-03 | -1.34 | 6.9 | 6.4e-12 | -0.41 | 0.18 | 0.26 | FALSE |
61 | GTEx | Skin Not Sun Exposed Suprapubic | PACSIN3 | 0.11 | 0.05 | lasso | 3 | 0.10 | 3.4e-06 | 7.56 | 8.5 | 2.6e-17 | -0.29 | 0.62 | 0.04 | FALSE |
62 | GTEx | Skin Not Sun Exposed Suprapubic | C1QTNF4 | 0.32 | 0.18 | enet | 33 | 0.20 | 5.2e-11 | -11.75 | 10.5 | 1.4e-25 | -0.90 | 0.00 | 1.00 | FALSE |
63 | GTEx | Skin Sun Exposed Lower leg | ACP2 | 0.16 | 0.14 | enet | 15 | 0.15 | 1.8e-12 | 6.87 | -8.8 | 2.1e-18 | 0.49 | 1.00 | 0.00 | FALSE |
64 | GTEx | Skin Sun Exposed Lower leg | PACSIN3 | 0.17 | 0.11 | lasso | 4 | 0.12 | 5.5e-10 | 7.56 | 8.3 | 1.1e-16 | -0.26 | 1.00 | 0.00 | FALSE |
65 | GTEx | Skin Sun Exposed Lower leg | PSMC3 | 0.20 | 0.05 | lasso | 7 | 0.10 | 1.2e-08 | 8.64 | -12.0 | 3.8e-33 | 0.69 | 0.66 | 0.31 | FALSE |
66 | GTEx | Skin Sun Exposed Lower leg | C1QTNF4 | 0.25 | 0.22 | lasso | 12 | 0.23 | 4.2e-19 | -11.75 | 11.7 | 1.4e-31 | -0.95 | 0.00 | 1.00 | FALSE |
67 | GTEx | Spleen | PACSIN3 | 0.54 | 0.47 | lasso | 1 | 0.45 | 7.2e-13 | 7.86 | 7.9 | 3.8e-15 | -0.20 | 1.00 | 0.00 | FALSE |
68 | GTEx | Spleen | C1QTNF4 | 0.31 | 0.28 | enet | 29 | 0.34 | 1.8e-09 | -8.75 | 10.7 | 1.4e-26 | -0.90 | 0.06 | 0.93 | FALSE |
69 | GTEx | Testis | NR1H3 | 0.10 | 0.10 | lasso | 6 | 0.08 | 2.9e-04 | 8.37 | -8.1 | 5.1e-16 | 0.41 | 0.61 | 0.02 | TRUE |
70 | GTEx | Testis | MTCH2 | 0.17 | 0.16 | lasso | 3 | 0.16 | 1.0e-07 | -9.88 | -9.9 | 3.2e-23 | 0.82 | 0.55 | 0.45 | FALSE |
71 | GTEx | Testis | C11orf49 | 0.57 | 0.45 | enet | 15 | 0.46 | 8.1e-23 | -7.46 | -6.4 | 1.8e-10 | 0.29 | 1.00 | 0.00 | FALSE |
72 | GTEx | Testis | C1QTNF4 | 0.14 | 0.12 | lasso | 4 | 0.11 | 1.6e-05 | 10.61 | 10.4 | 1.8e-25 | -0.73 | 0.26 | 0.69 | FALSE |
73 | GTEx | Thyroid | PACSIN3 | 0.14 | 0.09 | lasso | 3 | 0.09 | 2.9e-07 | 7.56 | 7.7 | 1.8e-14 | -0.20 | 0.98 | 0.00 | FALSE |
74 | GTEx | Whole Blood | C1QTNF4 | 0.09 | 0.05 | lasso | 3 | 0.03 | 1.4e-03 | -8.72 | 8.9 | 7.0e-19 | -0.86 | 0.16 | 0.75 | FALSE |
75 | METSIM | Adipose | ACP2 | 0.05 | 0.04 | blup | 302 | 0.06 | 1.7e-09 | -9.88 | -7.8 | 4.8e-15 | 0.67 | 0.29 | 0.71 | FALSE |
76 | METSIM | Adipose | C1QTNF4 | 0.24 | 0.31 | lasso | 7 | 0.31 | 1.2e-46 | -9.36 | 9.1 | 1.1e-19 | -0.87 | 1.00 | 0.00 | FALSE |
77 | METSIM | Adipose | MADD | 0.05 | 0.02 | bslmm | 315 | 0.02 | 8.3e-04 | 8.26 | 7.0 | 1.9e-12 | -0.11 | 0.26 | 0.02 | FALSE |
78 | METSIM | Adipose | MYBPC3 | 0.11 | 0.10 | enet | 26 | 0.11 | 1.0e-15 | -9.88 | 9.4 | 3.4e-21 | -0.81 | 0.26 | 0.74 | FALSE |
79 | METSIM | Adipose | PSMC3 | 0.06 | 0.03 | enet | 28 | 0.04 | 2.3e-06 | -8.60 | -11.0 | 2.8e-28 | 0.80 | 0.04 | 0.96 | TRUE |
80 | METSIM | Adipose | RAPSN | 0.11 | 0.01 | enet | 21 | 0.06 | 7.9e-09 | 0.63 | 9.1 | 8.4e-20 | -0.43 | 0.10 | 0.90 | TRUE |
81 | NTR | Blood | MADD | 0.01 | 0.01 | enet | 8 | 0.01 | 4.7e-03 | 9.50 | 6.1 | 1.0e-09 | -0.03 | 0.17 | 0.02 | FALSE |
82 | NTR | Blood | MTCH2 | 0.02 | 0.04 | lasso | 1 | 0.04 | 1.3e-11 | -9.35 | 9.3 | 8.4e-21 | -0.88 | 0.92 | 0.08 | FALSE |
83 | ROSMAP | Brain Pre-frontal Cortex | MTCH2 | 0.35 | 0.40 | enet | 9 | 0.40 | 4.7e-56 | -9.36 | -9.8 | 9.3e-23 | 0.91 | 1.00 | 0.00 | FALSE |
84 | ROSMAP | Brain Pre-frontal Cortex | FNBP4 | 0.04 | 0.04 | lasso | 3 | 0.04 | 8.2e-06 | 10.60 | -9.2 | 2.5e-20 | 0.69 | 0.88 | 0.11 | FALSE |
85 | ROSMAP | Brain Pre-frontal Cortex | ACP2 | 0.03 | 0.00 | blup | 295 | 0.02 | 1.5e-03 | -9.95 | -9.2 | 2.9e-20 | 0.73 | 0.06 | 0.86 | FALSE |
86 | ROSMAP | Brain Pre-frontal Cortex | CELF1 | 0.03 | 0.01 | bslmm | 289 | 0.01 | 2.9e-02 | 6.59 | 8.4 | 5.3e-17 | -0.50 | 0.18 | 0.05 | TRUE |
87 | ROSMAP | Brain Pre-frontal Cortex | PSMC3 | 0.15 | 0.08 | bslmm | 285 | 0.10 | 5.1e-13 | 10.40 | -13.1 | 4.7e-39 | 0.67 | 0.56 | 0.44 | FALSE |
88 | ROSMAP | Brain Pre-frontal Cortex | C1QTNF4 | 0.05 | 0.06 | blup | 281 | 0.06 | 1.7e-08 | -9.92 | 10.9 | 7.5e-28 | -0.86 | 0.05 | 0.95 | TRUE |
89 | YFS | Blood | CKAP5 | 0.01 | 0.01 | bslmm | 291 | 0.01 | 3.6e-03 | 4.46 | -7.7 | 1.0e-14 | 0.41 | 0.04 | 0.05 | FALSE |
90 | YFS | Blood | FNBP4 | 0.02 | 0.01 | bslmm | 301 | 0.01 | 8.9e-05 | 3.81 | -7.0 | 3.6e-12 | 0.78 | 0.03 | 0.95 | FALSE |
91 | YFS | Blood | NR1H3 | 0.34 | 0.15 | enet | 66 | 0.24 | 3.1e-76 | 7.95 | -7.1 | 1.5e-12 | 0.56 | 1.00 | 0.00 | FALSE |
92 | YFS | Blood | NUP160 | 0.02 | 0.01 | blup | 290 | 0.01 | 1.7e-04 | -8.83 | -5.2 | 1.7e-07 | 0.65 | 0.25 | 0.59 | FALSE |
93 | YFS | Blood | PSMC3 | 0.02 | 0.01 | blup | 289 | 0.01 | 2.8e-05 | -11.68 | -13.5 | 8.0e-42 | 0.84 | 0.00 | 0.99 | FALSE |
94 | YFS | Blood | PTPMT1 | 0.03 | 0.01 | lasso | 5 | 0.01 | 3.2e-04 | 11.18 | 10.6 | 2.7e-26 | -0.67 | 0.26 | 0.63 | FALSE |
95 | YFS | Blood | SPI1 | 0.65 | 0.18 | enet | 75 | 0.27 | 1.6e-87 | -9.95 | 6.4 | 1.5e-10 | -0.62 | 1.00 | 0.00 | FALSE |
96 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | C1QTNF4 | 0.06 | 0.07 | lasso | 2 | 0.06 | 4.9e-06 | -9.36 | 10.3 | 7.1e-25 | -0.93 | 0.01 | 0.99 | FALSE |
97 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ACP2 | 0.02 | 0.01 | blup | 44 | 0.02 | 2.7e-04 | 1.90 | -6.1 | 8.5e-10 | 0.51 | 0.05 | 0.02 | FALSE |
98 | The Cancer Genome Atlas | Breast Invasive Carcinoma | C1QTNF4 | 0.02 | 0.01 | lasso | 5 | 0.02 | 2.1e-04 | 0.68 | 6.2 | 4.9e-10 | -0.75 | 0.01 | 0.83 | FALSE |
99 | The Cancer Genome Atlas | Breast Invasive Carcinoma | MYBPC3 | 0.02 | 0.01 | blup | 43 | 0.01 | 3.4e-03 | -9.76 | 9.1 | 1.3e-19 | -0.73 | 0.01 | 0.97 | FALSE |
100 | The Cancer Genome Atlas | Colon Adenocarcinoma | C1QTNF4 | 0.12 | 0.12 | lasso | 1 | 0.12 | 1.6e-07 | -11.75 | 11.8 | 6.7e-32 | -1.00 | 0.00 | 1.00 | FALSE |
101 | The Cancer Genome Atlas | Colon Adenocarcinoma | KBTBD4 | 0.14 | 0.01 | blup | 13 | 0.02 | 1.6e-02 | 11.21 | -12.0 | 4.7e-33 | 0.91 | 0.00 | 0.54 | FALSE |
102 | The Cancer Genome Atlas | Colon Adenocarcinoma | NUP160 | 0.05 | 0.05 | blup | 44 | 0.05 | 7.7e-04 | 10.61 | -11.4 | 6.2e-30 | 0.83 | 0.02 | 0.84 | FALSE |
103 | The Cancer Genome Atlas | Colon Adenocarcinoma | PSMC3 | 0.09 | 0.05 | blup | 39 | 0.05 | 1.0e-03 | 1.70 | -8.2 | 2.0e-16 | 0.54 | 0.07 | 0.23 | FALSE |
104 | The Cancer Genome Atlas | Esophageal Carcinoma | C1QTNF4 | 0.39 | 0.33 | blup | 15 | 0.35 | 6.1e-12 | -11.75 | 12.0 | 3.3e-33 | -0.98 | 0.00 | 1.00 | FALSE |
105 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | C1QTNF4 | 0.06 | 0.08 | lasso | 3 | 0.08 | 7.5e-09 | -9.36 | 9.4 | 4.7e-21 | -0.88 | 0.04 | 0.96 | FALSE |
106 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | MYBPC3 | 0.05 | 0.03 | blup | 43 | 0.04 | 6.0e-05 | -9.28 | 9.9 | 4.2e-23 | -0.71 | 0.01 | 0.98 | FALSE |
107 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ACP2 | 0.03 | 0.03 | blup | 44 | 0.04 | 3.5e-05 | 8.37 | -6.2 | 4.4e-10 | 0.38 | 0.76 | 0.04 | FALSE |
108 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | C1QTNF4 | 0.12 | 0.14 | enet | 4 | 0.16 | 6.5e-18 | -9.36 | 10.6 | 2.6e-26 | -0.95 | 0.03 | 0.97 | FALSE |
109 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PSMC3 | 0.05 | 0.04 | lasso | 3 | 0.05 | 3.8e-06 | -8.60 | -9.7 | 4.1e-22 | 0.73 | 0.31 | 0.65 | FALSE |
110 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PTPMT1 | 0.07 | 0.03 | enet | 4 | 0.03 | 6.8e-04 | -6.39 | -6.4 | 1.5e-10 | 0.19 | 0.04 | 0.05 | TRUE |
111 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | C1QTNF4 | 0.13 | 0.16 | lasso | 1 | 0.16 | 3.1e-09 | -9.35 | 9.3 | 9.2e-21 | -0.88 | 0.15 | 0.85 | FALSE |
112 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | PSMC3 | 0.07 | 0.07 | enet | 7 | 0.06 | 1.4e-04 | -9.88 | -9.9 | 3.6e-23 | 0.82 | 0.17 | 0.57 | FALSE |
113 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ACP2 | 0.09 | 0.04 | enet | 12 | 0.06 | 5.0e-07 | 6.78 | -8.4 | 6.5e-17 | 0.56 | 0.97 | 0.00 | FALSE |
114 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MADD | 0.08 | 0.01 | lasso | 5 | 0.05 | 3.1e-06 | -9.95 | -5.2 | 2.5e-07 | 0.61 | 0.00 | 0.95 | FALSE |
115 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MTCH2 | 0.11 | 0.11 | lasso | 2 | 0.10 | 6.4e-12 | -9.36 | -9.4 | 7.9e-21 | 0.88 | 0.09 | 0.91 | FALSE |
116 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MYBPC3 | 0.03 | 0.01 | blup | 43 | 0.02 | 3.2e-03 | -9.81 | 11.2 | 7.0e-29 | -0.72 | 0.01 | 0.88 | FALSE |
117 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PSMC3 | 0.10 | 0.05 | blup | 39 | 0.08 | 3.7e-09 | -9.88 | -13.6 | 6.4e-42 | 0.79 | 0.22 | 0.78 | TRUE |
118 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | C1QTNF4 | 0.19 | 0.19 | lasso | 3 | 0.19 | 3.2e-09 | -9.36 | 9.4 | 7.9e-21 | -0.88 | 0.09 | 0.91 | FALSE |
119 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | PSMC3 | 0.09 | 0.07 | blup | 39 | 0.06 | 8.7e-04 | -9.81 | -9.4 | 3.6e-21 | 0.85 | 0.20 | 0.67 | FALSE |
120 | The Cancer Genome Atlas | Lung Adenocarcinoma | C1QTNF4 | 0.03 | 0.02 | blup | 15 | 0.02 | 1.3e-03 | -11.75 | 10.5 | 9.3e-26 | -0.97 | 0.00 | 0.97 | FALSE |
121 | The Cancer Genome Atlas | Lung Adenocarcinoma | MYBPC3 | 0.04 | 0.02 | enet | 10 | 0.04 | 2.9e-05 | -9.76 | 6.3 | 3.3e-10 | -0.68 | 0.01 | 0.97 | FALSE |
122 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | DDB2 | 0.02 | 0.03 | lasso | 1 | 0.02 | 1.0e-03 | 7.95 | 8.0 | 1.9e-15 | -0.40 | 0.13 | 0.20 | FALSE |
123 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | SLC39A13 | 0.06 | 0.01 | blup | 58 | 0.04 | 9.3e-04 | 10.37 | -10.6 | 1.8e-26 | 0.50 | 0.00 | 0.86 | FALSE |
124 | The Cancer Genome Atlas | Prostate Adenocarcinoma | AGBL2 | 0.04 | 0.03 | blup | 49 | 0.03 | 7.8e-04 | 8.46 | -9.4 | 7.8e-21 | 0.40 | 0.18 | 0.07 | FALSE |
125 | The Cancer Genome Atlas | Prostate Adenocarcinoma | NUP160 | 0.03 | 0.02 | enet | 7 | 0.02 | 6.3e-03 | -8.08 | -8.0 | 8.9e-16 | 0.83 | 0.06 | 0.37 | FALSE |
126 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PSMC3 | 0.02 | 0.02 | blup | 39 | 0.02 | 5.7e-03 | -9.88 | -9.6 | 6.7e-22 | 0.78 | 0.03 | 0.11 | FALSE |
127 | The Cancer Genome Atlas | Soft Tissue Sarcoma | ACP2 | 0.08 | 0.06 | enet | 7 | 0.06 | 1.6e-04 | 0.45 | -5.4 | 6.6e-08 | 0.30 | 0.03 | 0.04 | FALSE |
128 | The Cancer Genome Atlas | Stomach Adenocarcinoma | C1QTNF4 | 0.06 | 0.04 | lasso | 4 | 0.03 | 4.3e-03 | -9.34 | 10.1 | 6.0e-24 | -0.93 | 0.00 | 0.92 | FALSE |
129 | The Cancer Genome Atlas | Thyroid Carcinoma | C1QTNF4 | 0.04 | 0.01 | blup | 15 | 0.03 | 7.9e-04 | -11.75 | 7.8 | 7.0e-15 | -0.90 | 0.00 | 0.95 | FALSE |