Best TWAS P=1.83e-22 · Best GWAS P=3.44e-23 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | CCDC92 | 0.09 | 0.01 | bslmm | 438 | 0.03 | 3.1e-04 | -5.22 | 6.4 | 2.0e-10 | 0.21 | 0.83 | 0.01 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | RILPL1 | 0.03 | 0.00 | blup | 379 | 0.02 | 1.5e-03 | 6.36 | 8.3 | 8.2e-17 | 0.08 | 0.08 | 0.73 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | SETD8 | 0.04 | 0.01 | blup | 352 | 0.02 | 2.8e-03 | 5.08 | -5.8 | 7.2e-09 | -0.02 | 0.07 | 0.92 | FALSE |
4 | GTEx | Adipose Subcutaneous | ZCCHC8 | 0.04 | 0.00 | lasso | 7 | 0.00 | 1.4e-01 | 5.46 | 9.8 | 1.8e-22 | 0.01 | 0.12 | 0.37 | TRUE |
5 | GTEx | Adipose Subcutaneous | CDK2AP1 | 0.20 | 0.18 | lasso | 11 | 0.19 | 1.0e-15 | 8.05 | -8.3 | 1.1e-16 | -0.05 | 0.02 | 0.98 | FALSE |
6 | GTEx | Adipose Subcutaneous | RP11-282O18.3 | 0.15 | 0.14 | lasso | 7 | 0.15 | 2.0e-12 | 8.07 | -8.3 | 7.9e-17 | -0.05 | 0.02 | 0.98 | FALSE |
7 | GTEx | Adipose Subcutaneous | RP11-380L11.4 | 0.08 | 0.06 | lasso | 4 | 0.04 | 1.9e-04 | -6.32 | -6.2 | 4.4e-10 | -0.09 | 0.86 | 0.02 | FALSE |
8 | GTEx | Adipose Visceral Omentum | MPHOSPH9 | 0.07 | 0.02 | lasso | 4 | 0.00 | 3.5e-01 | 8.34 | 8.3 | 8.0e-17 | 0.04 | 0.03 | 0.78 | FALSE |
9 | GTEx | Adipose Visceral Omentum | CDK2AP1 | 0.14 | 0.14 | lasso | 4 | 0.11 | 2.7e-06 | 8.34 | -8.7 | 4.7e-18 | -0.06 | 0.01 | 0.99 | FALSE |
10 | GTEx | Adipose Visceral Omentum | RP11-282O18.3 | 0.14 | 0.11 | enet | 12 | 0.10 | 6.7e-06 | 8.34 | -8.8 | 2.1e-18 | -0.06 | 0.01 | 0.99 | FALSE |
11 | GTEx | Artery Aorta | MPHOSPH9 | 0.08 | 0.01 | lasso | 4 | 0.04 | 4.6e-03 | -0.93 | 5.7 | 1.3e-08 | 0.03 | 0.10 | 0.70 | FALSE |
12 | GTEx | Artery Aorta | CDK2AP1 | 0.17 | 0.19 | lasso | 2 | 0.15 | 8.0e-09 | 8.05 | -8.1 | 4.8e-16 | -0.04 | 0.03 | 0.97 | FALSE |
13 | GTEx | Artery Aorta | C12orf65 | 0.11 | 0.07 | lasso | 10 | 0.08 | 5.8e-05 | 6.86 | -7.9 | 3.8e-15 | -0.03 | 0.07 | 0.92 | FALSE |
14 | GTEx | Artery Aorta | RP11-282O18.3 | 0.18 | 0.19 | lasso | 9 | 0.16 | 4.3e-09 | 8.05 | -8.3 | 1.5e-16 | -0.04 | 0.02 | 0.98 | FALSE |
15 | GTEx | Artery Tibial | ZCCHC8 | 0.06 | 0.02 | enet | 14 | 0.01 | 2.5e-02 | 3.86 | 5.9 | 4.0e-09 | -0.03 | 0.06 | 0.44 | FALSE |
16 | GTEx | Artery Tibial | MPHOSPH9 | 0.05 | 0.03 | lasso | 3 | 0.03 | 2.2e-03 | 6.86 | 7.6 | 2.4e-14 | 0.02 | 0.06 | 0.90 | FALSE |
17 | GTEx | Artery Tibial | CDK2AP1 | 0.17 | 0.07 | enet | 36 | 0.09 | 1.1e-07 | 6.86 | -5.8 | 8.4e-09 | -0.04 | 0.04 | 0.96 | FALSE |
18 | GTEx | Artery Tibial | ABCB9 | 0.04 | 0.02 | lasso | 2 | 0.01 | 3.0e-02 | 3.74 | 6.1 | 9.1e-10 | 0.03 | 0.13 | 0.78 | FALSE |
19 | GTEx | Artery Tibial | SETD8 | 0.07 | 0.03 | lasso | 7 | 0.03 | 2.2e-03 | 8.07 | 8.7 | 2.8e-18 | 0.05 | 0.03 | 0.94 | FALSE |
20 | GTEx | Artery Tibial | RP11-282O18.3 | 0.17 | 0.08 | enet | 26 | 0.10 | 2.4e-08 | 6.86 | -5.9 | 3.5e-09 | -0.05 | 0.03 | 0.97 | FALSE |
21 | GTEx | Artery Tibial | RP11-380L11.4 | 0.14 | 0.12 | lasso | 4 | 0.12 | 2.2e-09 | -5.02 | -5.3 | 1.2e-07 | -0.13 | 1.00 | 0.00 | FALSE |
22 | GTEx | Brain Cerebellum | TMEM120B | 0.28 | 0.06 | enet | 18 | 0.04 | 2.6e-02 | 5.43 | -6.8 | 7.8e-12 | 0.01 | 0.07 | 0.11 | TRUE |
23 | GTEx | Brain Hippocampus | CLIP1 | 0.27 | 0.14 | lasso | 4 | 0.12 | 1.0e-03 | -4.07 | -5.7 | 1.2e-08 | -0.06 | 0.07 | 0.27 | FALSE |
24 | GTEx | Brain Hypothalamus | OGFOD2 | 0.24 | 0.14 | lasso | 4 | 0.14 | 4.0e-04 | 8.13 | 6.2 | 5.1e-10 | 0.05 | 0.06 | 0.88 | FALSE |
25 | GTEx | Breast Mammary Tissue | CDK2AP1 | 0.08 | 0.06 | lasso | 3 | 0.07 | 1.2e-04 | 7.53 | -7.9 | 2.5e-15 | -0.04 | 0.03 | 0.95 | FALSE |
26 | GTEx | Breast Mammary Tissue | RP11-282O18.3 | 0.10 | 0.06 | lasso | 6 | 0.08 | 5.4e-05 | 7.53 | -7.7 | 1.6e-14 | -0.04 | 0.05 | 0.94 | FALSE |
27 | GTEx | Breast Mammary Tissue (Female) | CDK2AP1 | 0.08 | 0.03 | lasso | 3 | 0.02 | 6.4e-02 | 8.22 | -7.8 | 4.3e-15 | -0.04 | 0.05 | 0.62 | FALSE |
28 | GTEx | Breast Mammary Tissue (Female) | CCDC92 | 0.05 | -0.01 | enet | 2 | -0.01 | 6.2e-01 | -5.22 | -5.2 | 1.8e-07 | -0.11 | 0.05 | 0.05 | FALSE |
29 | GTEx | Breast Mammary Tissue (Female) | RP11-282O18.3 | 0.09 | 0.07 | enet | 8 | 0.08 | 2.8e-03 | 7.39 | -7.9 | 2.7e-15 | -0.04 | 0.08 | 0.79 | FALSE |
30 | GTEx | Cells Transformed fibroblasts | TMED2 | 0.11 | 0.04 | lasso | 7 | 0.03 | 2.7e-03 | 2.31 | 5.1 | 3.0e-07 | 0.04 | 0.13 | 0.59 | FALSE |
31 | GTEx | Cells Transformed fibroblasts | OGFOD2 | 0.10 | 0.07 | lasso | 7 | 0.07 | 3.1e-06 | 4.16 | 6.7 | 2.1e-11 | 0.03 | 0.20 | 0.80 | FALSE |
32 | GTEx | Cells Transformed fibroblasts | CDK2AP1 | 0.31 | 0.32 | lasso | 8 | 0.35 | 8.5e-27 | 8.05 | -8.0 | 1.1e-15 | -0.03 | 0.03 | 0.97 | FALSE |
33 | GTEx | Cells Transformed fibroblasts | C12orf65 | 0.07 | 0.05 | lasso | 4 | 0.04 | 5.8e-04 | 7.11 | -7.9 | 3.0e-15 | -0.02 | 0.10 | 0.84 | FALSE |
34 | GTEx | Cells Transformed fibroblasts | ABCB9 | 0.08 | 0.12 | enet | 7 | 0.12 | 4.3e-09 | 4.00 | 6.2 | 6.0e-10 | 0.03 | 0.64 | 0.36 | FALSE |
35 | GTEx | Cells Transformed fibroblasts | SETD8 | 0.10 | 0.12 | enet | 9 | 0.09 | 1.4e-07 | 5.08 | 7.1 | 1.5e-12 | 0.08 | 0.03 | 0.97 | FALSE |
36 | GTEx | Cells Transformed fibroblasts | RP11-282O18.3 | 0.25 | 0.29 | enet | 16 | 0.28 | 2.2e-21 | 8.05 | -8.1 | 5.5e-16 | -0.03 | 0.03 | 0.97 | FALSE |
37 | GTEx | Colon Sigmoid | CDK2AP1 | 0.12 | 0.02 | enet | 12 | 0.11 | 1.1e-04 | 8.02 | -6.5 | 7.8e-11 | -0.01 | 0.03 | 0.95 | FALSE |
38 | GTEx | Colon Sigmoid | C12orf65 | 0.08 | 0.04 | enet | 12 | 0.06 | 3.0e-03 | 4.30 | -6.2 | 5.7e-10 | -0.04 | 0.04 | 0.89 | FALSE |
39 | GTEx | Colon Sigmoid | ABCB9 | 0.18 | 0.16 | lasso | 6 | 0.15 | 4.8e-06 | 8.02 | 7.5 | 6.7e-14 | 0.05 | 0.04 | 0.95 | FALSE |
40 | GTEx | Colon Sigmoid | RP11-282O18.3 | 0.16 | 0.03 | enet | 12 | 0.15 | 7.1e-06 | 8.05 | -5.5 | 4.5e-08 | 0.01 | 0.03 | 0.96 | FALSE |
41 | GTEx | Colon Transverse | CDK2AP1 | 0.17 | 0.19 | enet | 7 | 0.22 | 1.4e-10 | 8.22 | -8.5 | 2.0e-17 | -0.05 | 0.01 | 0.99 | FALSE |
42 | GTEx | Colon Transverse | ABCB9 | 0.08 | 0.07 | enet | 5 | 0.09 | 5.3e-05 | 8.07 | 6.9 | 4.8e-12 | 0.05 | 0.10 | 0.86 | FALSE |
43 | GTEx | Colon Transverse | MLXIP | 0.20 | 0.18 | enet | 23 | 0.14 | 5.8e-07 | 8.01 | 7.5 | 8.6e-14 | 0.09 | 0.08 | 0.92 | FALSE |
44 | GTEx | Colon Transverse | RP11-282O18.3 | 0.18 | 0.19 | enet | 8 | 0.19 | 1.8e-09 | 8.22 | -8.4 | 5.5e-17 | -0.04 | 0.02 | 0.98 | FALSE |
45 | GTEx | Esophagus Gastroesophageal Junction | CDK2AP1 | 0.14 | 0.06 | lasso | 8 | 0.06 | 4.7e-03 | 8.02 | -8.5 | 2.5e-17 | -0.07 | 0.03 | 0.74 | FALSE |
46 | GTEx | Esophagus Gastroesophageal Junction | RP11-282O18.3 | 0.16 | 0.06 | lasso | 9 | 0.07 | 2.3e-03 | 8.02 | -7.8 | 4.7e-15 | -0.03 | 0.03 | 0.82 | FALSE |
47 | GTEx | Esophagus Mucosa | CDK2AP1 | 0.30 | 0.36 | lasso | 5 | 0.38 | 1.9e-26 | 8.13 | -8.1 | 5.5e-16 | -0.04 | 0.02 | 0.98 | FALSE |
48 | GTEx | Esophagus Mucosa | ABCB9 | 0.10 | 0.03 | lasso | 5 | 0.05 | 5.4e-04 | 8.34 | 6.1 | 8.7e-10 | 0.02 | 0.05 | 0.94 | FALSE |
49 | GTEx | Esophagus Mucosa | RP11-282O18.3 | 0.29 | 0.34 | lasso | 4 | 0.34 | 1.9e-23 | 8.02 | -7.9 | 2.6e-15 | -0.04 | 0.04 | 0.96 | FALSE |
50 | GTEx | Esophagus Muscularis | MPHOSPH9 | 0.18 | 0.18 | enet | 17 | 0.18 | 4.8e-11 | 7.52 | 7.6 | 2.2e-14 | 0.03 | 0.11 | 0.89 | FALSE |
51 | GTEx | Esophagus Muscularis | CDK2AP1 | 0.17 | 0.10 | enet | 18 | 0.11 | 4.6e-07 | 8.13 | -8.8 | 1.3e-18 | -0.05 | 0.02 | 0.98 | FALSE |
52 | GTEx | Esophagus Muscularis | C12orf65 | 0.06 | 0.04 | lasso | 4 | 0.04 | 2.0e-03 | 8.20 | -7.4 | 1.4e-13 | -0.03 | 0.03 | 0.96 | FALSE |
53 | GTEx | Esophagus Muscularis | ABCB9 | 0.10 | 0.08 | lasso | 6 | 0.05 | 3.8e-04 | 8.02 | 7.1 | 1.7e-12 | 0.04 | 0.04 | 0.94 | FALSE |
54 | GTEx | Esophagus Muscularis | RP11-282O18.3 | 0.19 | 0.11 | lasso | 6 | 0.10 | 2.1e-06 | 8.13 | -7.7 | 1.3e-14 | -0.03 | 0.03 | 0.97 | FALSE |
55 | GTEx | Heart Left Ventricle | MPHOSPH9 | 0.06 | 0.04 | lasso | 5 | 0.04 | 4.2e-03 | 7.59 | 8.4 | 3.4e-17 | 0.07 | 0.10 | 0.73 | FALSE |
56 | GTEx | Heart Left Ventricle | ABCB9 | 0.10 | 0.14 | lasso | 5 | 0.10 | 4.2e-06 | 6.75 | 6.7 | 2.7e-11 | 0.04 | 0.60 | 0.34 | FALSE |
57 | GTEx | Lung | CDK2AP1 | 0.08 | 0.03 | lasso | 4 | 0.00 | 2.0e-01 | 8.05 | -8.4 | 3.5e-17 | -0.05 | 0.03 | 0.94 | FALSE |
58 | GTEx | Lung | ABCB9 | 0.04 | 0.02 | lasso | 3 | 0.02 | 8.0e-03 | 7.59 | 7.3 | 3.1e-13 | 0.03 | 0.14 | 0.66 | FALSE |
59 | GTEx | Lung | RP11-282O18.3 | 0.06 | 0.02 | lasso | 7 | 0.00 | 6.1e-01 | 8.05 | -8.3 | 1.0e-16 | -0.05 | 0.02 | 0.94 | FALSE |
60 | GTEx | Muscle Skeletal | PSMD9 | 0.05 | 0.03 | enet | 10 | 0.03 | 9.0e-04 | 6.03 | 5.4 | 7.5e-08 | -0.01 | 0.80 | 0.01 | FALSE |
61 | GTEx | Muscle Skeletal | RSRC2 | 0.06 | 0.03 | enet | 7 | 0.04 | 9.6e-05 | -4.30 | -7.2 | 7.7e-13 | -0.02 | 0.05 | 0.90 | FALSE |
62 | GTEx | Muscle Skeletal | SETD8 | 0.16 | 0.02 | lasso | 4 | 0.03 | 3.8e-04 | 8.20 | 5.4 | 5.2e-08 | 0.01 | 0.02 | 0.98 | FALSE |
63 | GTEx | Muscle Skeletal | RP11-380L11.4 | 0.14 | 0.03 | lasso | 8 | 0.03 | 4.0e-04 | -5.02 | -6.0 | 2.0e-09 | -0.15 | 0.88 | 0.00 | FALSE |
64 | GTEx | Nerve Tibial | MPHOSPH9 | 0.07 | 0.04 | lasso | 4 | 0.01 | 7.0e-02 | 8.02 | 8.7 | 3.0e-18 | 0.06 | 0.02 | 0.96 | FALSE |
65 | GTEx | Nerve Tibial | CDK2AP1 | 0.11 | 0.11 | enet | 25 | 0.09 | 4.4e-07 | 8.07 | -8.4 | 6.8e-17 | -0.05 | 0.04 | 0.96 | FALSE |
66 | GTEx | Nerve Tibial | C12orf65 | 0.05 | 0.07 | lasso | 3 | 0.06 | 3.0e-05 | 6.86 | -7.2 | 7.1e-13 | -0.01 | 0.11 | 0.82 | FALSE |
67 | GTEx | Nerve Tibial | ABCB9 | 0.06 | 0.04 | lasso | 3 | 0.05 | 3.5e-04 | 8.07 | 8.4 | 6.2e-17 | 0.04 | 0.04 | 0.95 | FALSE |
68 | GTEx | Nerve Tibial | KNTC1 | 0.12 | 0.05 | lasso | 5 | 0.05 | 1.9e-04 | -4.54 | -5.2 | 2.5e-07 | -0.01 | 0.35 | 0.36 | TRUE |
69 | GTEx | Nerve Tibial | RP11-282O18.3 | 0.10 | 0.10 | enet | 28 | 0.08 | 1.9e-06 | 8.07 | -8.2 | 2.2e-16 | -0.06 | 0.03 | 0.97 | FALSE |
70 | GTEx | Pancreas | MPHOSPH9 | 0.14 | 0.01 | enet | 31 | 0.07 | 9.3e-04 | 8.34 | -5.9 | 4.6e-09 | -0.05 | 0.03 | 0.83 | FALSE |
71 | GTEx | Pancreas | CDK2AP1 | 0.24 | 0.27 | lasso | 3 | 0.26 | 3.1e-11 | 8.22 | -8.3 | 1.3e-16 | -0.04 | 0.02 | 0.98 | FALSE |
72 | GTEx | Pancreas | ARL6IP4 | 0.07 | 0.07 | lasso | 2 | 0.07 | 9.6e-04 | 6.75 | -7.5 | 7.2e-14 | -0.04 | 0.08 | 0.73 | FALSE |
73 | GTEx | Pancreas | SETD8 | 0.20 | 0.12 | lasso | 5 | 0.13 | 3.4e-06 | 8.18 | -7.8 | 7.1e-15 | -0.04 | 0.02 | 0.98 | FALSE |
74 | GTEx | Pancreas | RP11-282O18.3 | 0.22 | 0.24 | lasso | 5 | 0.24 | 2.3e-10 | 8.05 | -8.3 | 1.5e-16 | -0.04 | 0.02 | 0.98 | FALSE |
75 | GTEx | Skin Not Sun Exposed Suprapubic | CDK2AP1 | 0.17 | 0.12 | lasso | 10 | 0.12 | 3.4e-07 | 8.02 | -8.2 | 2.1e-16 | -0.04 | 0.05 | 0.95 | FALSE |
76 | GTEx | Skin Not Sun Exposed Suprapubic | ABCB9 | 0.13 | 0.15 | lasso | 11 | 0.11 | 2.1e-06 | 4.00 | 5.6 | 2.4e-08 | 0.04 | 0.40 | 0.60 | FALSE |
77 | GTEx | Skin Not Sun Exposed Suprapubic | RP11-282O18.3 | 0.13 | 0.10 | lasso | 6 | 0.09 | 1.9e-05 | 7.45 | -8.2 | 2.4e-16 | -0.04 | 0.06 | 0.94 | FALSE |
78 | GTEx | Skin Sun Exposed Lower leg | MPHOSPH9 | 0.06 | 0.05 | enet | 9 | 0.06 | 2.1e-05 | 8.22 | 6.8 | 9.2e-12 | 0.04 | 0.02 | 0.97 | FALSE |
79 | GTEx | Skin Sun Exposed Lower leg | CDK2AP1 | 0.21 | 0.22 | lasso | 5 | 0.22 | 3.4e-18 | 8.05 | -8.2 | 1.6e-16 | -0.04 | 0.04 | 0.96 | FALSE |
80 | GTEx | Skin Sun Exposed Lower leg | CCDC92 | 0.11 | 0.00 | enet | 15 | 0.01 | 1.0e-01 | -2.85 | -5.1 | 2.6e-07 | -0.31 | 0.12 | 0.08 | TRUE |
81 | GTEx | Skin Sun Exposed Lower leg | WDR66 | 0.19 | 0.10 | lasso | 5 | 0.08 | 5.5e-07 | 6.39 | 7.5 | 4.4e-14 | 0.00 | 0.98 | 0.00 | TRUE |
82 | GTEx | Skin Sun Exposed Lower leg | RP11-282O18.3 | 0.17 | 0.20 | lasso | 6 | 0.20 | 2.2e-16 | 8.05 | -8.0 | 9.6e-16 | -0.03 | 0.04 | 0.96 | FALSE |
83 | GTEx | Skin Sun Exposed Lower leg | RP11-380L11.4 | 0.04 | 0.02 | enet | 15 | 0.02 | 1.9e-02 | -4.97 | -6.2 | 4.8e-10 | -0.16 | 0.41 | 0.03 | FALSE |
84 | GTEx | Small Intestine Terminal Ileum | ABCB9 | 0.23 | 0.21 | enet | 12 | 0.22 | 1.0e-05 | 7.59 | 7.1 | 9.2e-13 | 0.06 | 0.07 | 0.76 | FALSE |
85 | GTEx | Stomach | MPHOSPH9 | 0.17 | 0.08 | lasso | 5 | 0.10 | 1.2e-05 | 8.02 | 7.6 | 2.3e-14 | 0.04 | 0.07 | 0.91 | FALSE |
86 | GTEx | Testis | MPHOSPH9 | 0.28 | 0.27 | enet | 23 | 0.32 | 1.3e-14 | 7.45 | 7.3 | 2.3e-13 | 0.03 | 0.44 | 0.56 | FALSE |
87 | GTEx | Testis | CDK2AP1 | 0.20 | 0.14 | lasso | 5 | 0.13 | 2.0e-06 | 6.58 | -6.8 | 1.4e-11 | -0.04 | 0.23 | 0.75 | FALSE |
88 | GTEx | Testis | ABCB9 | 0.14 | 0.05 | lasso | 3 | 0.06 | 8.0e-04 | 6.75 | -8.9 | 4.1e-19 | -0.08 | 0.15 | 0.42 | FALSE |
89 | GTEx | Testis | RP11-282O18.3 | 0.18 | 0.09 | lasso | 9 | 0.12 | 7.8e-06 | 6.58 | -6.0 | 2.0e-09 | -0.02 | 0.19 | 0.49 | FALSE |
90 | GTEx | Testis | RP11-380L11.3 | 0.14 | 0.05 | enet | 29 | 0.06 | 1.4e-03 | -5.09 | -6.9 | 4.4e-12 | -0.33 | 0.14 | 0.21 | FALSE |
91 | GTEx | Thyroid | MPHOSPH9 | 0.10 | 0.08 | enet | 20 | 0.09 | 2.0e-07 | 7.18 | 7.6 | 3.8e-14 | 0.06 | 0.13 | 0.87 | FALSE |
92 | GTEx | Thyroid | PITPNM2 | 0.04 | 0.07 | lasso | 2 | 0.06 | 1.6e-05 | 8.13 | 8.1 | 6.6e-16 | 0.05 | 0.05 | 0.94 | FALSE |
93 | GTEx | Thyroid | CDK2AP1 | 0.08 | 0.09 | enet | 7 | 0.10 | 8.2e-08 | 8.05 | -8.3 | 8.5e-17 | -0.04 | 0.02 | 0.98 | FALSE |
94 | GTEx | Thyroid | RILPL2 | 0.13 | 0.00 | enet | 29 | 0.00 | 2.1e-01 | -3.45 | -5.1 | 2.9e-07 | -0.04 | 0.10 | 0.09 | TRUE |
95 | GTEx | Thyroid | ZNF664 | 0.13 | 0.06 | lasso | 11 | 0.08 | 6.7e-07 | -5.22 | 5.2 | 1.9e-07 | 0.11 | 1.00 | 0.00 | FALSE |
96 | GTEx | Thyroid | TMEM120B | 0.09 | 0.04 | lasso | 5 | 0.04 | 4.2e-04 | 6.30 | -5.2 | 2.5e-07 | 0.02 | 0.32 | 0.05 | TRUE |
97 | GTEx | Thyroid | RP11-282O18.3 | 0.06 | 0.06 | enet | 6 | 0.06 | 3.6e-05 | 8.05 | -8.4 | 5.4e-17 | -0.03 | 0.02 | 0.98 | FALSE |
98 | METSIM | Adipose | CDK2AP1 | 0.11 | 0.14 | enet | 23 | 0.14 | 1.7e-20 | 7.57 | -7.7 | 1.4e-14 | -0.02 | 0.04 | 0.96 | FALSE |
99 | METSIM | Adipose | CLIP1 | 0.03 | 0.01 | bslmm | 372 | 0.01 | 3.3e-03 | -5.38 | 6.8 | 1.5e-11 | 0.03 | 0.38 | 0.39 | FALSE |
100 | METSIM | Adipose | DNAH10 | 0.03 | 0.00 | bslmm | 475 | 0.01 | 3.2e-03 | -4.65 | -7.1 | 1.4e-12 | -0.14 | 0.19 | 0.03 | TRUE |
101 | METSIM | Adipose | WDR66 | 0.04 | 0.00 | blup | 341 | 0.01 | 1.4e-02 | 6.29 | 7.4 | 1.6e-13 | 0.02 | 0.04 | 0.14 | FALSE |
102 | YFS | Blood | MPHOSPH9 | 0.05 | 0.07 | enet | 31 | 0.07 | 3.7e-23 | 7.73 | 8.0 | 1.4e-15 | 0.03 | 0.08 | 0.92 | FALSE |
103 | YFS | Blood | SBNO1 | 0.03 | 0.03 | lasso | 6 | 0.03 | 1.2e-09 | 8.02 | -7.3 | 2.1e-13 | -0.04 | 0.04 | 0.96 | FALSE |
104 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | ABCB9 | 0.05 | 0.04 | enet | 5 | 0.04 | 2.4e-04 | 7.59 | 7.7 | 1.6e-14 | 0.02 | 0.00 | 0.98 | FALSE |
105 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | CDK2AP1 | 0.09 | 0.08 | lasso | 2 | 0.06 | 5.9e-06 | 8.02 | -8.0 | 1.1e-15 | -0.04 | 0.00 | 1.00 | FALSE |
106 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | LRRC43 | 0.06 | 0.03 | enet | 6 | 0.03 | 8.7e-04 | -4.09 | -5.4 | 7.6e-08 | -0.03 | 0.13 | 0.22 | FALSE |
107 | The Cancer Genome Atlas | Breast Invasive Carcinoma | CDK2AP1 | 0.07 | 0.08 | lasso | 7 | 0.08 | 5.0e-16 | 8.02 | -7.9 | 3.1e-15 | -0.04 | 0.01 | 0.99 | FALSE |
108 | The Cancer Genome Atlas | Breast Invasive Carcinoma | RILPL2 | 0.02 | 0.01 | enet | 8 | 0.01 | 2.6e-02 | 8.20 | 8.1 | 6.8e-16 | 0.03 | 0.00 | 0.98 | FALSE |
109 | The Cancer Genome Atlas | Breast Invasive Carcinoma | VPS33A | 0.01 | 0.02 | lasso | 2 | 0.02 | 2.7e-04 | 6.43 | -6.5 | 7.9e-11 | 0.03 | 0.03 | 0.94 | FALSE |
110 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | CDK2AP1 | 0.07 | 0.07 | blup | 34 | 0.05 | 1.1e-03 | 7.47 | -8.0 | 1.6e-15 | -0.03 | 0.01 | 0.88 | FALSE |
111 | The Cancer Genome Atlas | Colon Adenocarcinoma | CDK2AP1 | 0.12 | 0.17 | lasso | 4 | 0.17 | 6.3e-10 | 8.02 | -7.9 | 2.1e-15 | -0.04 | 0.00 | 1.00 | FALSE |
112 | The Cancer Genome Atlas | Colon Adenocarcinoma | MLXIP | 0.06 | 0.04 | lasso | 7 | 0.02 | 2.7e-02 | 7.82 | 7.4 | 1.3e-13 | 0.05 | 0.02 | 0.94 | TRUE |
113 | The Cancer Genome Atlas | Colon Adenocarcinoma | RILPL2 | 0.09 | 0.09 | blup | 43 | 0.08 | 3.1e-05 | 8.13 | 7.1 | 9.2e-13 | 0.04 | 0.00 | 0.99 | FALSE |
114 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | CDK2AP1 | 0.14 | 0.15 | lasso | 2 | 0.14 | 7.8e-16 | 8.02 | -7.9 | 3.1e-15 | -0.04 | 0.00 | 1.00 | FALSE |
115 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CDK2AP1 | 0.11 | 0.13 | lasso | 5 | 0.14 | 5.9e-16 | 8.05 | -7.8 | 5.2e-15 | -0.03 | 0.00 | 1.00 | FALSE |
116 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SNRNP35 | 0.03 | 0.03 | blup | 36 | 0.02 | 5.9e-03 | 2.71 | -5.4 | 7.2e-08 | -0.02 | 0.04 | 0.30 | FALSE |
117 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | C12orf65 | 0.05 | 0.04 | blup | 34 | 0.05 | 1.0e-03 | 4.68 | -5.7 | 9.0e-09 | -0.04 | 0.06 | 0.51 | FALSE |
118 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | CDK2AP1 | 0.12 | 0.10 | lasso | 2 | 0.11 | 6.3e-07 | 8.02 | -7.8 | 5.4e-15 | -0.04 | 0.00 | 1.00 | FALSE |
119 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | PITPNM2 | 0.06 | 0.07 | lasso | 5 | 0.09 | 1.2e-05 | 7.46 | -7.1 | 9.8e-13 | -0.02 | 0.19 | 0.79 | FALSE |
120 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CDK2AP1 | 0.02 | 0.01 | blup | 34 | 0.02 | 5.4e-03 | 4.58 | -5.2 | 1.7e-07 | -0.03 | 0.03 | 0.66 | FALSE |
121 | The Cancer Genome Atlas | Brain Lower Grade Glioma | LRRC43 | 0.03 | 0.03 | enet | 8 | 0.02 | 1.5e-03 | -3.61 | -5.6 | 2.0e-08 | -0.01 | 0.10 | 0.06 | TRUE |
122 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PSMD9 | 0.02 | 0.02 | blup | 58 | 0.02 | 1.5e-03 | 5.89 | 5.4 | 8.0e-08 | -0.05 | 0.03 | 0.73 | FALSE |
123 | The Cancer Genome Atlas | Brain Lower Grade Glioma | VPS33A | 0.03 | 0.05 | lasso | 1 | 0.05 | 4.4e-06 | 6.48 | -6.5 | 9.2e-11 | 0.02 | 0.29 | 0.70 | FALSE |
124 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | CDK2AP1 | 0.11 | 0.11 | enet | 5 | 0.11 | 1.2e-05 | 8.05 | -8.0 | 8.3e-16 | -0.04 | 0.00 | 1.00 | FALSE |
125 | The Cancer Genome Atlas | Lung Adenocarcinoma | CDK2AP1 | 0.03 | 0.04 | lasso | 1 | 0.04 | 1.2e-05 | 8.02 | -8.0 | 1.1e-15 | -0.04 | 0.00 | 1.00 | FALSE |
126 | The Cancer Genome Atlas | Lung Adenocarcinoma | RILPL2 | 0.04 | 0.02 | blup | 43 | 0.02 | 6.1e-04 | 7.69 | 6.3 | 3.4e-10 | 0.05 | 0.01 | 0.94 | FALSE |
127 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | ABCB9 | 0.06 | 0.06 | enet | 7 | 0.07 | 5.2e-08 | 4.38 | 5.3 | 1.4e-07 | 0.02 | 0.05 | 0.95 | FALSE |
128 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | CDK2AP1 | 0.04 | 0.04 | lasso | 3 | 0.03 | 3.8e-04 | 8.05 | -7.9 | 2.0e-15 | -0.04 | 0.00 | 0.99 | FALSE |
129 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | CDK2AP1 | 0.07 | 0.06 | enet | 7 | 0.06 | 7.0e-05 | 8.05 | -8.7 | 5.0e-18 | -0.03 | 0.00 | 0.98 | FALSE |
130 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | CDK2AP1 | 0.12 | 0.14 | blup | 34 | 0.15 | 7.2e-07 | 6.75 | -8.1 | 3.8e-16 | -0.03 | 0.01 | 0.99 | FALSE |
131 | The Cancer Genome Atlas | Prostate Adenocarcinoma | CDK2AP1 | 0.06 | 0.07 | lasso | 2 | 0.06 | 1.7e-06 | 8.05 | -8.0 | 1.0e-15 | -0.03 | 0.00 | 1.00 | FALSE |
132 | The Cancer Genome Atlas | Prostate Adenocarcinoma | LRRC43 | 0.04 | 0.00 | blup | 58 | 0.01 | 6.9e-02 | 6.70 | -7.4 | 1.2e-13 | 0.02 | 0.02 | 0.19 | TRUE |
133 | The Cancer Genome Atlas | Prostate Adenocarcinoma | VPS33A | 0.04 | 0.05 | lasso | 1 | 0.04 | 3.0e-05 | 6.43 | -6.4 | 1.3e-10 | 0.03 | 0.14 | 0.86 | FALSE |
134 | The Cancer Genome Atlas | Rectum Adenocarcinoma | MLXIP | 0.18 | 0.14 | lasso | 4 | 0.13 | 5.1e-04 | 7.41 | 7.6 | 2.3e-14 | 0.05 | 0.02 | 0.89 | TRUE |
135 | The Cancer Genome Atlas | Soft Tissue Sarcoma | CCDC92 | 0.05 | 0.03 | blup | 52 | 0.03 | 5.8e-03 | -3.83 | -5.7 | 1.3e-08 | -0.12 | 0.08 | 0.32 | FALSE |
136 | The Cancer Genome Atlas | Stomach Adenocarcinoma | CDK2AP1 | 0.09 | 0.10 | lasso | 2 | 0.10 | 1.8e-07 | 8.05 | -7.9 | 1.9e-15 | -0.04 | 0.00 | 1.00 | FALSE |
137 | The Cancer Genome Atlas | Stomach Adenocarcinoma | MLXIP | 0.06 | 0.02 | blup | 68 | 0.04 | 1.2e-03 | 7.92 | 6.8 | 7.5e-12 | 0.08 | 0.02 | 0.88 | FALSE |
138 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | CDK2AP1 | 0.13 | 0.10 | blup | 34 | 0.11 | 8.2e-05 | 6.58 | -7.0 | 1.9e-12 | -0.04 | 0.02 | 0.95 | FALSE |
139 | The Cancer Genome Atlas | Thyroid Carcinoma | CDK2AP1 | 0.08 | 0.10 | lasso | 2 | 0.10 | 1.3e-09 | 8.05 | -8.1 | 7.1e-16 | -0.04 | 0.00 | 1.00 | FALSE |
140 | The Cancer Genome Atlas | Thyroid Carcinoma | MPHOSPH9 | 0.27 | 0.09 | lasso | 4 | 0.09 | 9.8e-09 | 7.11 | 7.1 | 1.6e-12 | 0.01 | 0.56 | 0.44 | FALSE |
141 | The Cancer Genome Atlas | Thyroid Carcinoma | PITPNM2 | 0.04 | 0.03 | enet | 5 | 0.05 | 8.1e-06 | 6.57 | 7.6 | 3.4e-14 | 0.08 | 0.03 | 0.97 | FALSE |
142 | The Cancer Genome Atlas | Thyroid Carcinoma | SBNO1 | 0.03 | 0.01 | blup | 59 | 0.02 | 9.4e-03 | 7.47 | -7.7 | 1.3e-14 | -0.01 | 0.01 | 0.66 | FALSE |
143 | The Cancer Genome Atlas | Thyroid Carcinoma | VPS33A | 0.06 | 0.00 | enet | 8 | 0.03 | 9.6e-04 | 5.43 | -6.5 | 6.4e-11 | 0.02 | 0.46 | 0.48 | TRUE |