Best TWAS P=6.38e-51 · Best GWAS P=5.46e-43 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | CD276 | 0.05 | 0.04 | blup | 369 | 0.03 | 3.0e-04 | -0.15 | 6.5 | 6.7e-11 | 0.15 | 0.45 | 0.11 | TRUE |
2 | CommonMind | Brain Pre-frontal Cortex | MAN2C1 | 0.13 | 0.17 | lasso | 5 | 0.18 | 2.5e-21 | 9.29 | 8.7 | 2.8e-18 | 0.02 | 0.05 | 0.95 | FALSE |
3 | GTEx | Adipose Subcutaneous | PSTPIP1 | 0.07 | 0.05 | lasso | 3 | 0.03 | 1.0e-03 | -6.54 | -6.0 | 1.8e-09 | 0.01 | 0.68 | 0.07 | FALSE |
4 | GTEx | Adipose Subcutaneous | NEIL1 | 0.05 | 0.03 | lasso | 5 | 0.02 | 1.6e-02 | 9.29 | 10.0 | 2.0e-23 | 0.04 | 0.04 | 0.96 | FALSE |
5 | GTEx | Adipose Subcutaneous | MAN2C1 | 0.36 | 0.54 | enet | 18 | 0.54 | 2.7e-52 | 9.38 | 9.0 | 2.0e-19 | 0.03 | 0.02 | 0.98 | FALSE |
6 | GTEx | Adipose Visceral Omentum | NEIL1 | 0.09 | 0.03 | lasso | 3 | 0.05 | 2.0e-03 | 9.61 | 8.8 | 9.6e-19 | 0.01 | 0.03 | 0.93 | FALSE |
7 | GTEx | Adipose Visceral Omentum | MAN2C1 | 0.46 | 0.52 | lasso | 5 | 0.52 | 1.8e-31 | 9.38 | 9.5 | 2.9e-21 | 0.03 | 0.02 | 0.98 | FALSE |
8 | GTEx | Adipose Visceral Omentum | SNUPN | 0.14 | 0.12 | enet | 7 | 0.11 | 2.0e-06 | -3.75 | 6.3 | 3.5e-10 | 0.04 | 0.66 | 0.28 | FALSE |
9 | GTEx | Adipose Visceral Omentum | CTD-2323K18.1 | 0.14 | 0.13 | lasso | 5 | 0.10 | 4.1e-06 | -3.31 | 5.1 | 2.8e-07 | 0.03 | 0.90 | 0.08 | FALSE |
10 | GTEx | Adipose Visceral Omentum | RP11-797A18.4 | 0.06 | 0.05 | lasso | 3 | 0.06 | 4.1e-04 | 6.26 | -5.9 | 3.3e-09 | 0.00 | 0.33 | 0.05 | TRUE |
11 | GTEx | Adrenal Gland | MAN2C1 | 0.20 | 0.24 | lasso | 6 | 0.21 | 4.3e-08 | 9.63 | 9.6 | 9.6e-22 | 0.04 | 0.02 | 0.98 | FALSE |
12 | GTEx | Adrenal Gland | SNUPN | 0.17 | 0.05 | enet | 17 | 0.11 | 1.3e-04 | -2.87 | 7.8 | 6.8e-15 | 0.08 | 0.05 | 0.35 | TRUE |
13 | GTEx | Artery Aorta | NEIL1 | 0.11 | 0.07 | lasso | 3 | 0.08 | 2.3e-05 | -5.42 | 8.0 | 1.6e-15 | 0.03 | 0.10 | 0.88 | TRUE |
14 | GTEx | Artery Aorta | MAN2C1 | 0.48 | 0.60 | lasso | 5 | 0.59 | 7.1e-40 | 9.72 | 9.7 | 4.4e-22 | 0.04 | 0.01 | 0.99 | FALSE |
15 | GTEx | Artery Aorta | RP11-817O13.6 | 0.07 | 0.04 | enet | 6 | 0.05 | 6.1e-04 | 9.72 | 7.8 | 4.3e-15 | 0.03 | 0.02 | 0.94 | FALSE |
16 | GTEx | Artery Coronary | MAN2C1 | 0.54 | 0.39 | lasso | 7 | 0.35 | 1.7e-12 | 9.72 | 9.5 | 2.1e-21 | 0.04 | 0.01 | 0.99 | FALSE |
17 | GTEx | Artery Tibial | TSPAN3 | 0.14 | 0.07 | lasso | 5 | 0.10 | 1.6e-08 | 6.39 | -7.7 | 1.8e-14 | 0.00 | 0.98 | 0.02 | FALSE |
18 | GTEx | Artery Tibial | MAN2C1 | 0.33 | 0.45 | lasso | 4 | 0.44 | 9.2e-38 | 9.72 | 9.6 | 6.2e-22 | 0.03 | 0.02 | 0.98 | FALSE |
19 | GTEx | Artery Tibial | LINGO1 | 0.08 | 0.04 | lasso | 5 | 0.03 | 2.7e-03 | -5.04 | -5.8 | 7.2e-09 | 0.01 | 0.10 | 0.65 | TRUE |
20 | GTEx | Artery Tibial | LOXL1-AS1 | 0.12 | 0.11 | enet | 19 | 0.12 | 2.4e-09 | -12.78 | 8.1 | 5.6e-16 | -0.08 | 0.98 | 0.01 | TRUE |
21 | GTEx | Brain Caudate basal ganglia | MAN2C1 | 0.23 | 0.24 | enet | 20 | 0.22 | 7.9e-07 | 9.72 | 9.4 | 8.2e-21 | 0.05 | 0.02 | 0.98 | FALSE |
22 | GTEx | Brain Cerebellar Hemisphere | MAN2C1 | 0.23 | 0.15 | lasso | 5 | 0.15 | 1.2e-04 | 9.69 | 10.7 | 8.2e-27 | 0.07 | 0.02 | 0.89 | TRUE |
23 | GTEx | Brain Cortex | RP11-797A18.4 | 0.47 | 0.28 | enet | 14 | 0.34 | 3.3e-10 | 6.41 | -6.1 | 9.8e-10 | 0.00 | 0.75 | 0.21 | FALSE |
24 | GTEx | Brain Frontal Cortex BA9 | MAN2C1 | 0.27 | 0.25 | lasso | 3 | 0.21 | 2.8e-06 | 9.72 | 9.7 | 1.9e-22 | 0.04 | 0.02 | 0.98 | FALSE |
25 | GTEx | Brain Frontal Cortex BA9 | RP11-797A18.4 | 0.35 | 0.35 | lasso | 5 | 0.35 | 4.8e-10 | 6.42 | -5.9 | 4.0e-09 | 0.00 | 0.95 | 0.02 | FALSE |
26 | GTEx | Brain Hippocampus | MAN2C1 | 0.21 | 0.26 | lasso | 3 | 0.26 | 9.4e-07 | 9.38 | 9.6 | 7.5e-22 | 0.03 | 0.03 | 0.96 | FALSE |
27 | GTEx | Brain Hippocampus | PEAK1 | 0.23 | 0.05 | lasso | 6 | 0.02 | 9.9e-02 | -4.84 | 6.4 | 1.6e-10 | 0.00 | 0.13 | 0.09 | FALSE |
28 | GTEx | Brain Hypothalamus | RP11-797A18.4 | 0.21 | 0.18 | lasso | 7 | 0.22 | 7.6e-06 | 6.28 | -6.4 | 1.2e-10 | 0.02 | 0.38 | 0.23 | FALSE |
29 | GTEx | Brain Nucleus accumbens basal ganglia | MAN2C1 | 0.14 | 0.17 | lasso | 3 | 0.12 | 3.3e-04 | 9.23 | 9.3 | 1.2e-20 | 0.03 | 0.03 | 0.95 | FALSE |
30 | GTEx | Brain Nucleus accumbens basal ganglia | PEAK1 | 0.17 | 0.12 | lasso | 4 | 0.08 | 2.8e-03 | -6.63 | 6.7 | 1.9e-11 | -0.01 | 0.26 | 0.09 | FALSE |
31 | GTEx | Brain Nucleus accumbens basal ganglia | RP11-797A18.4 | 0.12 | 0.22 | lasso | 1 | 0.17 | 3.1e-05 | 6.26 | -6.3 | 3.9e-10 | 0.01 | 0.13 | 0.40 | FALSE |
32 | GTEx | Brain Putamen basal ganglia | RP11-797A18.4 | 0.27 | 0.06 | lasso | 5 | 0.06 | 1.7e-02 | 6.05 | -5.6 | 2.2e-08 | 0.01 | 0.03 | 0.38 | FALSE |
33 | GTEx | Breast Mammary Tissue | MAN2C1 | 0.42 | 0.54 | lasso | 5 | 0.52 | 4.6e-31 | 9.72 | 9.5 | 1.7e-21 | 0.04 | 0.01 | 0.99 | FALSE |
34 | GTEx | Breast Mammary Tissue (Male) | STOML1 | 0.21 | -0.01 | lasso | 4 | -0.01 | 5.4e-01 | 3.38 | 5.4 | 7.7e-08 | 0.33 | 0.04 | 0.14 | FALSE |
35 | GTEx | Breast Mammary Tissue (Male) | MAN2C1 | 0.37 | 0.38 | lasso | 3 | 0.34 | 9.7e-09 | 9.55 | 9.2 | 3.9e-20 | 0.03 | 0.03 | 0.97 | FALSE |
36 | GTEx | Breast Mammary Tissue (Male) | CTD-2323K18.1 | 0.36 | 0.24 | lasso | 5 | 0.19 | 3.4e-05 | -3.54 | 5.4 | 5.5e-08 | 0.01 | 0.12 | 0.36 | FALSE |
37 | GTEx | Breast Mammary Tissue (Female) | MAN2C1 | 0.39 | 0.41 | lasso | 6 | 0.45 | 7.6e-15 | 9.58 | 9.7 | 4.8e-22 | 0.03 | 0.02 | 0.98 | FALSE |
38 | GTEx | Breast Mammary Tissue (Female) | SNUPN | 0.11 | 0.12 | lasso | 5 | 0.10 | 7.7e-04 | -3.10 | 5.3 | 1.0e-07 | 0.04 | 0.06 | 0.27 | FALSE |
39 | GTEx | Cells EBV-transformed lymphocytes | PSTPIP1 | 0.13 | 0.04 | enet | 13 | 0.10 | 4.0e-04 | 6.42 | -8.6 | 1.2e-17 | 0.03 | 0.26 | 0.17 | TRUE |
40 | GTEx | Cells EBV-transformed lymphocytes | TSPAN3 | 0.26 | 0.14 | lasso | 6 | 0.12 | 8.2e-05 | -6.10 | -7.4 | 1.6e-13 | -0.02 | 0.17 | 0.11 | FALSE |
41 | GTEx | Cells EBV-transformed lymphocytes | MAN2C1 | 0.28 | 0.19 | enet | 22 | 0.26 | 4.6e-09 | 9.72 | 8.6 | 1.0e-17 | 0.04 | 0.02 | 0.98 | TRUE |
42 | GTEx | Cells EBV-transformed lymphocytes | SNUPN | 0.20 | 0.02 | enet | 16 | 0.08 | 1.4e-03 | 9.58 | 8.4 | 4.4e-17 | 0.05 | 0.03 | 0.90 | FALSE |
43 | GTEx | Cells EBV-transformed lymphocytes | CTD-2323K18.1 | 0.39 | 0.13 | enet | 28 | 0.26 | 3.3e-09 | -3.65 | 6.8 | 7.7e-12 | 0.04 | 0.33 | 0.43 | FALSE |
44 | GTEx | Cells Transformed fibroblasts | UBE2Q2 | 0.19 | 0.09 | enet | 16 | 0.10 | 4.2e-08 | 3.17 | -5.3 | 9.2e-08 | -0.05 | 0.71 | 0.02 | FALSE |
45 | GTEx | Cells Transformed fibroblasts | TSPAN3 | 0.17 | 0.16 | lasso | 3 | 0.17 | 1.7e-12 | 6.39 | -5.3 | 1.0e-07 | 0.03 | 0.98 | 0.02 | FALSE |
46 | GTEx | Cells Transformed fibroblasts | NEIL1 | 0.10 | 0.09 | lasso | 3 | 0.09 | 3.1e-07 | -5.10 | 6.1 | 8.9e-10 | 0.02 | 0.68 | 0.32 | FALSE |
47 | GTEx | Cells Transformed fibroblasts | MAN2C1 | 0.38 | 0.50 | lasso | 4 | 0.49 | 6.2e-42 | 9.72 | 9.6 | 1.1e-21 | 0.03 | 0.02 | 0.98 | FALSE |
48 | GTEx | Cells Transformed fibroblasts | PML | 0.14 | 0.02 | lasso | 4 | 0.02 | 1.9e-02 | -9.55 | 9.7 | 4.1e-22 | 0.43 | 0.26 | 0.14 | TRUE |
49 | GTEx | Cells Transformed fibroblasts | IMP3 | 0.05 | 0.06 | lasso | 2 | 0.05 | 1.3e-04 | 8.95 | -9.3 | 1.2e-20 | -0.05 | 0.04 | 0.91 | FALSE |
50 | GTEx | Cells Transformed fibroblasts | RP11-797A18.4 | 0.12 | 0.11 | lasso | 8 | 0.12 | 4.0e-09 | 6.27 | -6.2 | 6.3e-10 | 0.01 | 0.99 | 0.01 | FALSE |
51 | GTEx | Cells Transformed fibroblasts | LOXL1-AS1 | 0.28 | 0.09 | lasso | 6 | 0.17 | 1.7e-12 | 3.84 | 9.5 | 2.6e-21 | -0.15 | 0.92 | 0.08 | FALSE |
52 | GTEx | Colon Sigmoid | MAN2C1 | 0.36 | 0.46 | lasso | 3 | 0.45 | 1.9e-17 | 9.38 | 9.4 | 6.7e-21 | 0.03 | 0.02 | 0.98 | FALSE |
53 | GTEx | Colon Transverse | RCN2 | 0.20 | 0.04 | enet | 21 | 0.08 | 1.8e-04 | 5.89 | -5.7 | 9.0e-09 | 0.01 | 0.16 | 0.10 | FALSE |
54 | GTEx | Colon Transverse | MAN2C1 | 0.42 | 0.55 | lasso | 6 | 0.54 | 8.1e-30 | 9.63 | 9.6 | 5.6e-22 | 0.04 | 0.01 | 0.99 | FALSE |
55 | GTEx | Colon Transverse | SNUPN | 0.15 | 0.12 | lasso | 3 | 0.08 | 7.7e-05 | 9.72 | 9.7 | 2.1e-22 | 0.04 | 0.02 | 0.97 | FALSE |
56 | GTEx | Colon Transverse | CTD-2323K18.1 | 0.13 | 0.04 | lasso | 11 | 0.05 | 1.8e-03 | 9.72 | 8.8 | 1.3e-18 | 0.04 | 0.03 | 0.92 | FALSE |
57 | GTEx | Esophagus Gastroesophageal Junction | MAN2C1 | 0.37 | 0.49 | lasso | 2 | 0.49 | 7.3e-20 | 9.38 | 9.4 | 4.9e-21 | 0.03 | 0.04 | 0.96 | FALSE |
58 | GTEx | Esophagus Mucosa | MAN2C1 | 0.27 | 0.38 | lasso | 2 | 0.39 | 9.9e-28 | 9.72 | 9.6 | 9.4e-22 | 0.03 | 0.02 | 0.98 | FALSE |
59 | GTEx | Esophagus Mucosa | LOXL1-AS1 | 0.30 | 0.03 | enet | 37 | 0.05 | 2.0e-04 | 0.44 | 6.3 | 3.4e-10 | 0.01 | 0.18 | 0.06 | TRUE |
60 | GTEx | Esophagus Muscularis | NEIL1 | 0.08 | 0.08 | enet | 10 | 0.05 | 4.7e-04 | -4.94 | 6.1 | 1.3e-09 | 0.02 | 0.34 | 0.57 | FALSE |
61 | GTEx | Esophagus Muscularis | MAN2C1 | 0.55 | 0.60 | lasso | 3 | 0.62 | 3.6e-47 | 9.72 | 9.7 | 4.0e-22 | 0.03 | 0.01 | 0.99 | FALSE |
62 | GTEx | Esophagus Muscularis | RP11-797A18.4 | 0.07 | 0.09 | lasso | 3 | 0.09 | 6.3e-06 | 6.39 | -6.4 | 1.7e-10 | 0.02 | 0.78 | 0.02 | TRUE |
63 | GTEx | Heart Atrial Appendage | STOML1 | 0.20 | 0.09 | lasso | 6 | 0.18 | 1.0e-08 | 3.90 | 6.8 | 8.6e-12 | 0.24 | 0.56 | 0.20 | TRUE |
64 | GTEx | Heart Atrial Appendage | MAN2C1 | 0.30 | 0.28 | lasso | 5 | 0.29 | 1.8e-13 | 9.38 | 9.5 | 1.5e-21 | 0.03 | 0.02 | 0.98 | FALSE |
65 | GTEx | Heart Left Ventricle | MAN2C1 | 0.18 | 0.19 | lasso | 4 | 0.16 | 4.8e-09 | 9.72 | 9.6 | 6.5e-22 | 0.03 | 0.02 | 0.98 | FALSE |
66 | GTEx | Heart Left Ventricle | RP11-797A18.4 | 0.16 | 0.09 | enet | 12 | 0.08 | 3.3e-05 | 6.39 | -7.0 | 2.7e-12 | 0.01 | 0.80 | 0.05 | FALSE |
67 | GTEx | Liver | MAN2C1 | 0.37 | 0.24 | lasso | 5 | 0.21 | 1.6e-06 | 9.72 | 9.0 | 1.8e-19 | 0.03 | 0.02 | 0.97 | FALSE |
68 | GTEx | Lung | MAN2C1 | 0.33 | 0.51 | lasso | 3 | 0.50 | 2.1e-43 | 9.38 | 9.5 | 2.3e-21 | 0.03 | 0.05 | 0.95 | FALSE |
69 | GTEx | Lung | SNUPN | 0.14 | 0.06 | lasso | 2 | 0.07 | 2.7e-06 | 9.62 | 8.7 | 3.7e-18 | 0.04 | 0.03 | 0.96 | TRUE |
70 | GTEx | Muscle Skeletal | HMG20A | 0.04 | 0.00 | lasso | 4 | 0.01 | 7.2e-02 | 5.18 | -5.4 | 5.5e-08 | 0.01 | 0.09 | 0.26 | FALSE |
71 | GTEx | Muscle Skeletal | MAN2C1 | 0.05 | 0.01 | enet | 6 | 0.03 | 5.6e-04 | 9.62 | 8.7 | 3.9e-18 | 0.04 | 0.02 | 0.96 | FALSE |
72 | GTEx | Muscle Skeletal | RP11-797A18.4 | 0.14 | 0.14 | lasso | 6 | 0.18 | 6.6e-17 | 6.27 | -5.3 | 1.1e-07 | 0.00 | 0.99 | 0.01 | FALSE |
73 | GTEx | Nerve Tibial | ETFA | 0.11 | 0.03 | lasso | 2 | 0.02 | 1.2e-02 | 5.53 | -5.6 | 2.0e-08 | -0.11 | 0.09 | 0.05 | FALSE |
74 | GTEx | Nerve Tibial | TSPAN3 | 0.13 | 0.08 | lasso | 2 | 0.07 | 9.0e-06 | 6.39 | -6.5 | 7.8e-11 | 0.01 | 0.91 | 0.02 | FALSE |
75 | GTEx | Nerve Tibial | MAN2C1 | 0.37 | 0.52 | enet | 20 | 0.53 | 5.6e-44 | 9.72 | 9.7 | 3.8e-22 | 0.03 | 0.01 | 0.99 | FALSE |
76 | GTEx | Nerve Tibial | CYP11A1 | 0.06 | 0.00 | lasso | 2 | 0.00 | 5.9e-01 | -7.21 | -7.2 | 5.7e-13 | -0.03 | 0.65 | 0.01 | FALSE |
77 | GTEx | Nerve Tibial | IMP3 | 0.08 | 0.00 | enet | 14 | 0.00 | 5.5e-01 | -1.65 | -6.6 | 3.5e-11 | -0.08 | 0.04 | 0.22 | TRUE |
78 | GTEx | Nerve Tibial | CTD-2323K18.1 | 0.19 | 0.11 | lasso | 7 | 0.10 | 1.6e-07 | -3.75 | 5.9 | 2.7e-09 | 0.04 | 1.00 | 0.00 | FALSE |
79 | GTEx | Nerve Tibial | RP11-817O13.6 | 0.05 | 0.03 | lasso | 2 | 0.01 | 3.5e-02 | 9.29 | 8.9 | 4.6e-19 | 0.03 | 0.04 | 0.88 | FALSE |
80 | GTEx | Ovary | MAN2C1 | 0.45 | 0.54 | lasso | 2 | 0.56 | 2.7e-16 | 9.63 | 8.2 | 1.7e-16 | 0.02 | 0.02 | 0.98 | FALSE |
81 | GTEx | Ovary | PEAK1 | 0.21 | 0.02 | lasso | 6 | 0.04 | 4.0e-02 | -6.25 | 5.6 | 2.5e-08 | -0.02 | 0.19 | 0.05 | FALSE |
82 | GTEx | Pancreas | MAN2C1 | 0.39 | 0.41 | lasso | 1 | 0.39 | 1.0e-17 | 9.72 | 9.7 | 2.4e-22 | 0.04 | 0.01 | 0.99 | FALSE |
83 | GTEx | Pituitary | MAN2C1 | 0.31 | 0.37 | lasso | 5 | 0.34 | 2.1e-09 | 9.38 | 9.7 | 3.7e-22 | 0.03 | 0.02 | 0.98 | FALSE |
84 | GTEx | Prostate | MAN2C1 | 0.26 | 0.30 | lasso | 3 | 0.33 | 4.6e-09 | 9.38 | 9.5 | 2.7e-21 | 0.03 | 0.04 | 0.96 | FALSE |
85 | GTEx | Skin Not Sun Exposed Suprapubic | MAN2C1 | 0.39 | 0.44 | lasso | 4 | 0.44 | 1.2e-26 | 9.38 | 9.3 | 1.1e-20 | 0.03 | 0.02 | 0.98 | FALSE |
86 | GTEx | Skin Not Sun Exposed Suprapubic | SNUPN | 0.13 | 0.00 | enet | 9 | 0.06 | 2.6e-04 | -3.31 | 6.5 | 1.0e-10 | 0.03 | 0.04 | 0.67 | FALSE |
87 | GTEx | Skin Sun Exposed Lower leg | ISLR | 0.08 | 0.00 | enet | 14 | 0.03 | 2.8e-03 | 4.10 | 9.0 | 1.8e-19 | -0.02 | 0.14 | 0.08 | FALSE |
88 | GTEx | Skin Sun Exposed Lower leg | TSPAN3 | 0.11 | 0.03 | enet | 8 | 0.10 | 2.5e-08 | -6.10 | -6.4 | 1.4e-10 | 0.02 | 0.52 | 0.03 | FALSE |
89 | GTEx | Skin Sun Exposed Lower leg | MAN2C1 | 0.30 | 0.36 | enet | 17 | 0.38 | 1.6e-32 | 9.58 | 9.8 | 8.0e-23 | 0.05 | 0.02 | 0.98 | FALSE |
90 | GTEx | Skin Sun Exposed Lower leg | SCAMP2 | 0.41 | 0.03 | lasso | 8 | 0.12 | 2.1e-10 | 4.67 | -5.2 | 1.5e-07 | -0.06 | 0.54 | 0.19 | FALSE |
91 | GTEx | Skin Sun Exposed Lower leg | LOXL1-AS1 | 0.11 | 0.05 | enet | 11 | 0.10 | 7.3e-09 | 4.33 | 10.6 | 3.0e-26 | 0.07 | 0.89 | 0.01 | TRUE |
92 | GTEx | Spleen | MAN2C1 | 0.70 | 0.62 | lasso | 5 | 0.57 | 1.2e-17 | 9.72 | 9.4 | 5.4e-21 | 0.03 | 0.01 | 0.99 | FALSE |
93 | GTEx | Stomach | MAN2C1 | 0.36 | 0.45 | lasso | 3 | 0.46 | 2.0e-24 | 9.38 | 9.6 | 9.6e-22 | 0.03 | 0.01 | 0.99 | FALSE |
94 | GTEx | Testis | PSTPIP1 | 0.10 | 0.03 | lasso | 3 | 0.02 | 4.1e-02 | 6.41 | -6.4 | 1.2e-10 | 0.00 | 0.23 | 0.09 | FALSE |
95 | GTEx | Testis | MAN2C1 | 0.25 | 0.26 | lasso | 4 | 0.28 | 1.1e-12 | 9.72 | 9.4 | 3.6e-21 | 0.04 | 0.01 | 0.99 | TRUE |
96 | GTEx | Testis | LOXL1-AS1 | 0.36 | 0.15 | lasso | 10 | 0.13 | 2.4e-06 | -12.78 | -13.6 | 7.4e-42 | 0.04 | 0.53 | 0.04 | TRUE |
97 | GTEx | Thyroid | NEIL1 | 0.06 | 0.06 | lasso | 2 | 0.07 | 9.0e-06 | 9.47 | 9.5 | 3.4e-21 | 0.03 | 0.06 | 0.93 | FALSE |
98 | GTEx | Thyroid | MAN2C1 | 0.44 | 0.53 | lasso | 6 | 0.55 | 3.1e-49 | 9.38 | 9.1 | 6.6e-20 | 0.03 | 0.02 | 0.98 | FALSE |
99 | GTEx | Thyroid | SNUPN | 0.15 | 0.10 | lasso | 7 | 0.16 | 6.2e-12 | -3.54 | 7.8 | 6.6e-15 | 0.03 | 0.09 | 0.91 | FALSE |
100 | GTEx | Thyroid | SIN3A | 0.06 | 0.05 | enet | 16 | 0.04 | 9.7e-04 | 9.63 | 8.7 | 4.8e-18 | 0.02 | 0.03 | 0.96 | FALSE |
101 | GTEx | Thyroid | C15orf59 | 0.23 | 0.12 | lasso | 7 | 0.11 | 6.7e-09 | 6.86 | 7.3 | 3.3e-13 | 0.05 | 1.00 | 0.00 | FALSE |
102 | GTEx | Thyroid | RP11-817O13.6 | 0.05 | 0.05 | lasso | 1 | 0.03 | 1.3e-03 | 9.47 | 9.5 | 2.7e-21 | 0.03 | 0.05 | 0.88 | FALSE |
103 | GTEx | Thyroid | LOXL1-AS1 | 0.15 | 0.03 | enet | 40 | 0.03 | 2.6e-03 | -12.78 | 15.0 | 6.4e-51 | 0.34 | 0.08 | 0.48 | TRUE |
104 | GTEx | Uterus | MAN2C1 | 0.52 | 0.56 | lasso | 2 | 0.61 | 1.4e-15 | 9.38 | 9.1 | 9.7e-20 | 0.03 | 0.03 | 0.97 | FALSE |
105 | GTEx | Vagina | MAN2C1 | 0.31 | 0.30 | enet | 6 | 0.27 | 5.6e-07 | 9.63 | 9.4 | 7.2e-21 | 0.03 | 0.02 | 0.98 | FALSE |
106 | GTEx | Whole Blood | TSPAN3 | 0.05 | 0.04 | lasso | 2 | 0.03 | 1.8e-03 | -6.10 | -5.3 | 9.2e-08 | 0.01 | 0.16 | 0.03 | FALSE |
107 | GTEx | Whole Blood | MAN2C1 | 0.28 | 0.29 | lasso | 5 | 0.29 | 3.2e-27 | 9.38 | 9.6 | 1.2e-21 | 0.02 | 0.03 | 0.97 | FALSE |
108 | GTEx | Whole Blood | LOXL1-AS1 | 0.10 | 0.00 | enet | 33 | 0.00 | 5.8e-01 | 10.31 | 8.7 | 3.6e-18 | 0.06 | 0.05 | 0.05 | TRUE |
109 | METSIM | Adipose | MAN2C1 | 0.22 | 0.41 | lasso | 6 | 0.41 | 1.1e-66 | 9.37 | 9.3 | 1.0e-20 | 0.04 | 0.03 | 0.97 | FALSE |
110 | METSIM | Adipose | PSTPIP1 | 0.04 | 0.04 | lasso | 3 | 0.04 | 2.3e-06 | -6.48 | -7.4 | 1.1e-13 | 0.01 | 0.89 | 0.09 | FALSE |
111 | NTR | Blood | MAN2C1 | 0.02 | 0.03 | lasso | 2 | 0.03 | 1.5e-10 | 9.63 | 9.6 | 5.3e-22 | 0.02 | 0.03 | 0.97 | FALSE |
112 | YFS | Blood | IMP3 | 0.02 | 0.01 | enet | 9 | 0.02 | 5.9e-06 | 8.21 | -9.0 | 2.5e-19 | -0.04 | 0.08 | 0.91 | TRUE |
113 | YFS | Blood | SNUPN | 0.02 | 0.02 | bslmm | 207 | 0.02 | 1.5e-07 | 6.59 | 7.9 | 2.2e-15 | 0.04 | 0.02 | 0.98 | FALSE |
114 | YFS | Blood | STOML1 | 0.15 | 0.12 | bslmm | 388 | 0.17 | 2.8e-52 | 3.15 | 7.2 | 4.5e-13 | 0.30 | 1.00 | 0.00 | TRUE |
115 | YFS | Blood | TSPAN3 | 0.18 | 0.14 | bslmm | 256 | 0.18 | 5.9e-57 | -6.71 | -7.6 | 3.4e-14 | 0.02 | 0.87 | 0.13 | FALSE |
116 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | MAN2C1 | 0.06 | 0.02 | blup | 14 | 0.03 | 8.9e-04 | 9.29 | 7.9 | 2.0e-15 | 0.01 | 0.00 | 0.94 | FALSE |
117 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | TSPAN3 | 0.05 | 0.00 | enet | 7 | 0.02 | 9.7e-03 | 6.26 | -5.9 | 2.9e-09 | -0.01 | 0.04 | 0.08 | FALSE |
118 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ISLR2 | 0.02 | 0.02 | lasso | 2 | 0.01 | 5.4e-04 | -7.75 | -7.9 | 2.8e-15 | -0.05 | 0.14 | 0.54 | FALSE |
119 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ISLR | 0.02 | 0.02 | lasso | 2 | 0.01 | 6.2e-04 | -7.39 | 7.8 | 5.1e-15 | 0.04 | 0.02 | 0.91 | TRUE |
120 | The Cancer Genome Atlas | Breast Invasive Carcinoma | LOC283731 | 0.02 | 0.01 | blup | 15 | 0.01 | 1.9e-03 | -7.56 | -9.7 | 3.5e-22 | -0.16 | 0.01 | 0.64 | FALSE |
121 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SCAPER | 0.05 | 0.02 | lasso | 3 | 0.02 | 7.5e-05 | 7.12 | -7.4 | 1.0e-13 | -0.07 | 0.06 | 0.90 | FALSE |
122 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SNUPN | 0.04 | 0.02 | lasso | 3 | 0.03 | 3.3e-06 | -3.10 | 7.0 | 3.0e-12 | 0.03 | 0.04 | 0.94 | FALSE |
123 | The Cancer Genome Atlas | Breast Invasive Carcinoma | STRA6 | 0.02 | 0.02 | lasso | 2 | 0.02 | 4.5e-05 | -8.64 | 8.7 | 3.1e-18 | 0.12 | 0.01 | 0.93 | TRUE |
124 | The Cancer Genome Atlas | Breast Invasive Carcinoma | TSPAN3 | 0.03 | 0.01 | blup | 43 | 0.01 | 8.2e-03 | 6.23 | -8.0 | 1.3e-15 | 0.00 | 0.09 | 0.09 | FALSE |
125 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | MAN2C1 | 0.12 | 0.11 | blup | 14 | 0.12 | 1.4e-06 | 9.23 | 8.4 | 6.3e-17 | 0.02 | 0.00 | 1.00 | FALSE |
126 | The Cancer Genome Atlas | Colon Adenocarcinoma | RCN2 | 0.11 | 0.00 | blup | 39 | 0.01 | 4.6e-02 | 6.42 | -5.8 | 8.2e-09 | -0.04 | 0.01 | 0.08 | FALSE |
127 | The Cancer Genome Atlas | Colon Adenocarcinoma | SNUPN | 0.11 | 0.10 | lasso | 4 | 0.11 | 6.9e-07 | 9.63 | 9.3 | 1.0e-20 | 0.03 | 0.01 | 0.99 | FALSE |
128 | The Cancer Genome Atlas | Esophageal Carcinoma | SNUPN | 0.18 | 0.11 | lasso | 5 | 0.07 | 2.6e-03 | 9.63 | 9.4 | 4.3e-21 | 0.03 | 0.01 | 0.90 | FALSE |
129 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ETFA | 0.17 | 0.01 | enet | 16 | 0.05 | 3.9e-06 | 5.55 | -5.2 | 1.8e-07 | -0.05 | 0.01 | 0.93 | FALSE |
130 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | SCAPER | 0.11 | 0.01 | lasso | 3 | 0.01 | 2.2e-02 | 7.12 | -6.3 | 3.6e-10 | -0.06 | 0.05 | 0.38 | FALSE |
131 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | LOC283731 | 0.02 | 0.03 | lasso | 2 | 0.02 | 7.7e-04 | -7.56 | -7.6 | 3.9e-14 | -0.02 | 0.03 | 0.73 | FALSE |
132 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SNUPN | 0.05 | 0.03 | blup | 38 | 0.05 | 4.0e-06 | 9.55 | 8.0 | 1.5e-15 | 0.03 | 0.01 | 0.99 | FALSE |
133 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | STOML1 | 0.04 | 0.00 | blup | 62 | 0.01 | 3.0e-02 | 3.90 | 7.2 | 8.4e-13 | 0.15 | 0.05 | 0.04 | FALSE |
134 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | TSPAN3 | 0.05 | 0.01 | blup | 43 | 0.01 | 1.5e-02 | 6.27 | -7.4 | 1.3e-13 | 0.00 | 0.02 | 0.06 | FALSE |
135 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | MAN2C1 | 0.11 | 0.05 | lasso | 5 | 0.09 | 1.2e-05 | -3.29 | 7.4 | 1.4e-13 | 0.02 | 0.00 | 0.93 | FALSE |
136 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | SNUPN | 0.11 | 0.06 | blup | 38 | 0.06 | 3.9e-04 | 9.61 | 7.5 | 5.6e-14 | 0.01 | 0.01 | 0.95 | FALSE |
137 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MAN2C1 | 0.08 | 0.06 | blup | 14 | 0.09 | 2.0e-10 | 9.23 | 7.9 | 3.3e-15 | 0.02 | 0.00 | 1.00 | FALSE |
138 | The Cancer Genome Atlas | Brain Lower Grade Glioma | NEIL1 | 0.10 | 0.03 | enet | 4 | 0.07 | 2.0e-08 | 9.34 | 7.3 | 2.6e-13 | 0.03 | 0.00 | 1.00 | FALSE |
139 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PSTPIP1 | 0.07 | 0.02 | lasso | 3 | 0.02 | 8.9e-04 | -6.57 | -6.4 | 1.8e-10 | -0.03 | 0.28 | 0.11 | FALSE |
140 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | EDC3 | 0.17 | 0.08 | enet | 7 | 0.07 | 3.9e-04 | -7.21 | 7.8 | 5.0e-15 | 0.03 | 0.00 | 0.85 | TRUE |
141 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | SNUPN | 0.14 | 0.10 | lasso | 4 | 0.08 | 1.1e-04 | 9.61 | 9.6 | 6.4e-22 | 0.03 | 0.01 | 0.99 | FALSE |
142 | The Cancer Genome Atlas | Lung Adenocarcinoma | SNUPN | 0.03 | 0.03 | enet | 8 | 0.02 | 9.9e-04 | 9.58 | 9.2 | 2.3e-20 | 0.04 | 0.01 | 0.98 | FALSE |
143 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | SCAPER | 0.06 | 0.00 | enet | 5 | 0.00 | 3.4e-01 | 7.14 | -7.4 | 9.6e-14 | -0.08 | 0.02 | 0.25 | TRUE |
144 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | MAN2C1 | 0.08 | 0.02 | blup | 14 | 0.04 | 1.3e-02 | 9.23 | 8.8 | 1.1e-18 | 0.03 | 0.00 | 0.75 | FALSE |
145 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | RCN2 | 0.25 | 0.05 | lasso | 4 | 0.03 | 1.6e-02 | 7.33 | -7.6 | 3.6e-14 | -0.05 | 0.00 | 0.62 | FALSE |
146 | The Cancer Genome Atlas | Prostate Adenocarcinoma | ISLR2 | 0.06 | 0.07 | lasso | 2 | 0.06 | 3.9e-07 | -7.56 | -7.6 | 3.9e-14 | -0.02 | 0.97 | 0.03 | FALSE |
147 | The Cancer Genome Atlas | Prostate Adenocarcinoma | LOC283731 | 0.02 | 0.03 | lasso | 3 | 0.02 | 1.5e-03 | -7.57 | -7.6 | 3.3e-14 | -0.03 | 0.03 | 0.42 | FALSE |
148 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MAN2C1 | 0.07 | 0.04 | blup | 15 | 0.05 | 6.6e-06 | -3.29 | 7.3 | 3.6e-13 | 0.04 | 0.12 | 0.62 | FALSE |
149 | The Cancer Genome Atlas | Prostate Adenocarcinoma | NEIL1 | 0.05 | 0.05 | lasso | 3 | 0.05 | 9.0e-06 | 9.29 | 9.3 | 1.7e-20 | 0.02 | 0.00 | 1.00 | FALSE |
150 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SCAPER | 0.05 | 0.02 | blup | 151 | 0.02 | 2.3e-03 | 2.62 | -6.3 | 3.8e-10 | -0.09 | 0.08 | 0.38 | TRUE |
151 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SNUPN | 0.13 | 0.09 | blup | 38 | 0.12 | 6.0e-13 | -3.10 | 8.2 | 1.6e-16 | 0.05 | 0.42 | 0.58 | FALSE |
152 | The Cancer Genome Atlas | Rectum Adenocarcinoma | HMG20A | 0.22 | 0.18 | lasso | 2 | 0.12 | 1.1e-03 | -6.29 | 6.4 | 1.5e-10 | -0.03 | 0.01 | 0.69 | FALSE |
153 | The Cancer Genome Atlas | Rectum Adenocarcinoma | SCAPER | 0.37 | 0.00 | blup | 151 | 0.07 | 1.0e-02 | -2.37 | -5.7 | 1.0e-08 | -0.07 | 0.06 | 0.25 | TRUE |
154 | The Cancer Genome Atlas | Soft Tissue Sarcoma | NEIL1 | 0.05 | 0.03 | enet | 6 | 0.02 | 1.6e-02 | -5.01 | 6.0 | 1.6e-09 | 0.01 | 0.01 | 0.47 | FALSE |
155 | The Cancer Genome Atlas | Stomach Adenocarcinoma | SCAPER | 0.18 | 0.01 | blup | 151 | 0.02 | 2.2e-02 | 7.14 | -7.4 | 1.5e-13 | -0.05 | 0.02 | 0.92 | FALSE |
156 | The Cancer Genome Atlas | Stomach Adenocarcinoma | UBL7 | 0.06 | 0.00 | blup | 34 | 0.03 | 5.0e-03 | -3.05 | -6.1 | 1.1e-09 | 0.01 | 0.00 | 0.05 | FALSE |
157 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | GOLGA6C | 0.14 | 0.06 | lasso | 2 | 0.13 | 2.6e-05 | -3.48 | -7.0 | 3.4e-12 | -0.06 | 0.00 | 0.81 | FALSE |
158 | The Cancer Genome Atlas | Thyroid Carcinoma | ISLR2 | 0.04 | 0.05 | lasso | 2 | 0.04 | 6.5e-05 | -7.75 | -7.7 | 1.1e-14 | -0.03 | 0.22 | 0.62 | TRUE |
159 | The Cancer Genome Atlas | Thyroid Carcinoma | LOC283731 | 0.04 | 0.06 | lasso | 1 | 0.05 | 4.8e-06 | -7.57 | -7.6 | 3.8e-14 | -0.03 | 0.08 | 0.90 | FALSE |
160 | The Cancer Genome Atlas | Thyroid Carcinoma | MAN2C1 | 0.09 | 0.05 | blup | 13 | 0.06 | 3.1e-06 | -3.29 | 7.4 | 1.0e-13 | 0.04 | 0.10 | 0.73 | FALSE |
161 | The Cancer Genome Atlas | Thyroid Carcinoma | NEIL1 | 0.10 | 0.10 | blup | 14 | 0.12 | 4.7e-12 | -5.00 | 6.4 | 1.1e-10 | 0.01 | 0.43 | 0.57 | FALSE |
162 | The Cancer Genome Atlas | Thyroid Carcinoma | PSTPIP1 | 0.07 | 0.01 | enet | 8 | 0.03 | 4.8e-04 | 7.71 | 5.7 | 9.2e-09 | 0.03 | 0.00 | 0.82 | FALSE |
163 | The Cancer Genome Atlas | Thyroid Carcinoma | SNUPN | 0.19 | 0.12 | enet | 11 | 0.20 | 1.1e-19 | -3.10 | 7.9 | 3.5e-15 | 0.04 | 0.07 | 0.93 | FALSE |