Best TWAS P=3.71e-76 · Best GWAS P=3.8e-71 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | CCDC23 | 0.27 | 0.25 | enet | 33 | 0.29 | 5.7e-35 | 4.93 | 5.4 | 6.6e-08 | -0.06 | 0.01 | 0.98 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | TESK2 | 0.06 | 0.02 | bslmm | 327 | 0.04 | 2.3e-05 | -17.75 | -16.4 | 1.5e-60 | 0.89 | 0.05 | 0.95 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | ZSWIM5 | 0.07 | 0.01 | bslmm | 383 | 0.04 | 1.6e-05 | -5.07 | -10.1 | 6.3e-24 | 0.69 | 0.07 | 0.91 | FALSE |
4 | GTEx | Adipose Subcutaneous | MAST2 | 0.09 | 0.09 | lasso | 4 | 0.08 | 2.6e-07 | 9.33 | 9.2 | 2.3e-20 | -0.06 | 1.00 | 0.00 | FALSE |
5 | GTEx | Adipose Subcutaneous | PRDX1 | 0.08 | 0.06 | enet | 5 | 0.10 | 2.9e-08 | -12.60 | 17.0 | 7.5e-65 | -0.80 | 0.11 | 0.89 | FALSE |
6 | GTEx | Adipose Subcutaneous | MMACHC | 0.09 | 0.03 | lasso | 4 | 0.06 | 1.4e-05 | 4.05 | -11.5 | 1.2e-30 | 0.60 | 0.19 | 0.64 | FALSE |
7 | GTEx | Adipose Subcutaneous | MUTYH | 0.04 | 0.00 | enet | 23 | 0.00 | 8.5e-01 | -11.04 | 10.2 | 1.4e-24 | -0.42 | 0.17 | 0.06 | FALSE |
8 | GTEx | Adipose Subcutaneous | CCDC17 | 0.07 | 0.03 | enet | 11 | 0.05 | 3.1e-05 | -11.04 | 8.3 | 6.8e-17 | -0.34 | 0.81 | 0.01 | FALSE |
9 | GTEx | Adipose Subcutaneous | GPBP1L1 | 0.05 | 0.05 | lasso | 4 | 0.05 | 8.7e-05 | 9.22 | 11.2 | 3.4e-29 | -0.23 | 0.84 | 0.03 | TRUE |
10 | GTEx | Adipose Subcutaneous | ZSWIM5 | 0.13 | 0.07 | enet | 10 | 0.10 | 3.5e-08 | -5.23 | -8.9 | 6.8e-19 | 0.63 | 0.96 | 0.04 | FALSE |
11 | GTEx | Adipose Subcutaneous | RP11-767N6.2 | 0.03 | 0.03 | enet | 6 | 0.04 | 3.0e-04 | -6.75 | -11.5 | 1.6e-30 | 0.39 | 0.32 | 0.14 | FALSE |
12 | GTEx | Adipose Visceral Omentum | PIK3R3 | 0.07 | 0.02 | lasso | 3 | 0.04 | 4.6e-03 | -11.36 | -11.6 | 5.2e-31 | 0.39 | 0.32 | 0.39 | FALSE |
13 | GTEx | Adipose Visceral Omentum | GPBP1L1 | 0.10 | 0.04 | lasso | 6 | 0.06 | 3.4e-04 | 9.29 | 11.9 | 1.2e-32 | -0.27 | 0.96 | 0.00 | FALSE |
14 | GTEx | Adipose Visceral Omentum | ZSWIM5 | 0.13 | 0.09 | lasso | 6 | 0.07 | 2.8e-04 | -5.23 | -7.8 | 9.2e-15 | 0.58 | 0.27 | 0.70 | FALSE |
15 | GTEx | Artery Aorta | MAST2 | 0.26 | 0.32 | lasso | 16 | 0.31 | 2.0e-17 | 9.29 | 9.3 | 1.5e-20 | -0.10 | 1.00 | 0.00 | FALSE |
16 | GTEx | Artery Aorta | PRDX1 | 0.12 | 0.09 | enet | 14 | 0.07 | 1.2e-04 | -12.60 | 14.0 | 8.5e-45 | -0.60 | 0.05 | 0.81 | FALSE |
17 | GTEx | Artery Aorta | ZSWIM5 | 0.13 | 0.05 | lasso | 4 | 0.06 | 2.7e-04 | -5.23 | -7.7 | 1.0e-14 | 0.55 | 0.37 | 0.10 | FALSE |
18 | GTEx | Artery Coronary | MAST2 | 0.09 | 0.09 | lasso | 4 | 0.08 | 1.3e-03 | 9.32 | 7.8 | 9.5e-15 | -0.06 | 0.52 | 0.04 | FALSE |
19 | GTEx | Artery Tibial | EIF2B3 | 0.05 | 0.05 | lasso | 3 | 0.04 | 4.3e-04 | -2.82 | -6.6 | 5.5e-11 | 0.24 | 0.22 | 0.03 | FALSE |
20 | GTEx | Artery Tibial | MAST2 | 0.29 | 0.30 | lasso | 2 | 0.30 | 1.8e-23 | 9.34 | 9.3 | 9.4e-21 | -0.10 | 1.00 | 0.00 | FALSE |
21 | GTEx | Artery Tibial | PRDX1 | 0.20 | 0.16 | lasso | 7 | 0.20 | 1.9e-15 | -12.60 | 14.0 | 1.2e-44 | -0.68 | 0.74 | 0.26 | FALSE |
22 | GTEx | Artery Tibial | GPBP1L1 | 0.04 | 0.04 | enet | 7 | 0.03 | 2.2e-03 | -9.05 | 10.9 | 1.8e-27 | -0.24 | 0.79 | 0.01 | FALSE |
23 | GTEx | Artery Tibial | CCDC23 | 0.30 | 0.17 | lasso | 6 | 0.19 | 3.9e-15 | 4.91 | 5.2 | 1.8e-07 | -0.05 | 0.01 | 0.98 | FALSE |
24 | GTEx | Artery Tibial | RP11-767N6.2 | 0.04 | 0.02 | enet | 5 | 0.04 | 6.9e-04 | -17.16 | -17.7 | 5.8e-70 | 0.80 | 0.14 | 0.76 | FALSE |
25 | GTEx | Brain Caudate basal ganglia | MUTYH | 0.19 | 0.05 | enet | 21 | 0.14 | 1.1e-04 | 11.89 | 15.9 | 7.6e-57 | -0.69 | 0.03 | 0.77 | FALSE |
26 | GTEx | Brain Cerebellar Hemisphere | CCDC23 | 0.34 | 0.26 | lasso | 4 | 0.22 | 2.6e-06 | 4.91 | 5.5 | 4.0e-08 | -0.04 | 0.01 | 0.95 | FALSE |
27 | GTEx | Brain Cerebellum | AKR1A1 | 0.18 | 0.02 | lasso | 1 | 0.00 | 3.3e-01 | -17.43 | -17.4 | 5.2e-68 | 0.90 | 0.03 | 0.69 | FALSE |
28 | GTEx | Breast Mammary Tissue | GPBP1L1 | 0.06 | 0.02 | lasso | 5 | 0.00 | 2.4e-01 | -11.47 | 12.0 | 6.3e-33 | -0.37 | 0.28 | 0.03 | FALSE |
29 | GTEx | Breast Mammary Tissue | CCDC23 | 0.17 | 0.15 | lasso | 7 | 0.14 | 2.0e-07 | 4.86 | 5.5 | 3.0e-08 | -0.07 | 0.02 | 0.97 | TRUE |
30 | GTEx | Breast Mammary Tissue (Female) | LURAP1 | 0.08 | -0.01 | enet | 27 | -0.01 | 5.9e-01 | 0.30 | -7.2 | 5.3e-13 | 0.28 | 0.04 | 0.24 | FALSE |
31 | GTEx | Cells Transformed fibroblasts | MAST2 | 0.25 | 0.33 | enet | 16 | 0.30 | 1.0e-22 | 9.34 | 8.9 | 4.3e-19 | -0.06 | 1.00 | 0.00 | FALSE |
32 | GTEx | Cells Transformed fibroblasts | PRDX1 | 0.19 | 0.15 | lasso | 3 | 0.15 | 2.6e-11 | -12.60 | 13.8 | 1.8e-43 | -0.66 | 0.73 | 0.27 | FALSE |
33 | GTEx | Cells Transformed fibroblasts | MMACHC | 0.09 | 0.04 | lasso | 3 | 0.08 | 1.5e-06 | -17.16 | -13.7 | 7.8e-43 | 0.81 | 0.03 | 0.96 | FALSE |
34 | GTEx | Cells Transformed fibroblasts | MUTYH | 0.20 | 0.10 | enet | 22 | 0.11 | 8.3e-09 | -11.67 | 13.5 | 1.0e-41 | -0.43 | 0.99 | 0.01 | FALSE |
35 | GTEx | Cells Transformed fibroblasts | GPBP1L1 | 0.05 | 0.02 | enet | 21 | 0.02 | 1.1e-02 | 9.29 | 7.9 | 2.1e-15 | -0.03 | 0.53 | 0.02 | TRUE |
36 | GTEx | Cells Transformed fibroblasts | IPP | 0.04 | 0.08 | lasso | 1 | 0.08 | 2.3e-06 | -12.00 | 12.0 | 3.6e-33 | -0.42 | 0.92 | 0.01 | FALSE |
37 | GTEx | Colon Sigmoid | MAST2 | 0.18 | 0.10 | lasso | 4 | 0.13 | 2.5e-05 | 9.34 | 9.7 | 2.4e-22 | -0.15 | 0.92 | 0.00 | FALSE |
38 | GTEx | Colon Transverse | MAST2 | 0.18 | 0.09 | lasso | 7 | 0.07 | 4.5e-04 | 7.50 | 6.6 | 4.1e-11 | -0.05 | 0.77 | 0.02 | FALSE |
39 | GTEx | Colon Transverse | GPBP1L1 | 0.06 | 0.01 | lasso | 6 | 0.01 | 8.3e-02 | -11.69 | 14.4 | 5.1e-47 | -0.47 | 0.30 | 0.23 | FALSE |
40 | GTEx | Esophagus Mucosa | GPBP1L1 | 0.04 | 0.02 | lasso | 3 | 0.02 | 1.5e-02 | -11.83 | 12.3 | 9.5e-35 | -0.38 | 0.23 | 0.04 | FALSE |
41 | GTEx | Esophagus Muscularis | MAST2 | 0.17 | 0.13 | enet | 30 | 0.11 | 3.8e-07 | 9.23 | 9.1 | 1.2e-19 | -0.16 | 1.00 | 0.00 | FALSE |
42 | GTEx | Esophagus Muscularis | ATP6V0B | 0.48 | 0.00 | enet | 20 | 0.03 | 4.3e-03 | 0.51 | 5.9 | 3.6e-09 | -0.01 | 0.01 | 0.88 | TRUE |
43 | GTEx | Esophagus Muscularis | UROD | 0.20 | 0.19 | enet | 14 | 0.22 | 2.0e-13 | -4.50 | 6.0 | 2.1e-09 | -0.27 | 1.00 | 0.00 | FALSE |
44 | GTEx | Esophagus Muscularis | MUTYH | 0.08 | 0.04 | enet | 9 | 0.04 | 1.5e-03 | -11.04 | 12.8 | 1.2e-37 | -0.52 | 0.30 | 0.36 | FALSE |
45 | GTEx | Esophagus Muscularis | CCDC17 | 0.04 | 0.04 | lasso | 6 | 0.01 | 9.1e-02 | -12.00 | 12.4 | 2.5e-35 | -0.45 | 0.28 | 0.45 | FALSE |
46 | GTEx | Heart Atrial Appendage | MMACHC | 0.10 | 0.06 | enet | 11 | 0.10 | 3.3e-05 | -11.47 | -17.8 | 1.4e-70 | 0.81 | 0.04 | 0.93 | FALSE |
47 | GTEx | Heart Atrial Appendage | ZSWIM5 | 0.11 | 0.10 | lasso | 3 | 0.09 | 1.1e-04 | -17.16 | -15.7 | 2.7e-55 | 0.86 | 0.09 | 0.71 | FALSE |
48 | GTEx | Heart Left Ventricle | MAST2 | 0.21 | 0.08 | lasso | 7 | 0.10 | 5.5e-06 | 9.48 | 6.0 | 2.1e-09 | -0.01 | 0.97 | 0.00 | FALSE |
49 | GTEx | Lung | MAST2 | 0.06 | 0.06 | lasso | 5 | 0.05 | 1.7e-04 | 9.34 | 9.2 | 2.4e-20 | -0.07 | 0.97 | 0.00 | FALSE |
50 | GTEx | Lung | PRDX1 | 0.07 | 0.06 | enet | 16 | 0.05 | 5.3e-05 | -17.16 | 15.4 | 9.1e-54 | -0.88 | 0.08 | 0.90 | FALSE |
51 | GTEx | Lung | GPBP1L1 | 0.04 | 0.02 | enet | 14 | 0.02 | 5.8e-03 | -11.81 | 12.1 | 1.9e-33 | -0.32 | 0.61 | 0.02 | FALSE |
52 | GTEx | Lung | RP11-767N6.2 | 0.04 | 0.02 | enet | 7 | 0.03 | 3.1e-03 | -11.75 | -10.0 | 2.4e-23 | 0.45 | 0.51 | 0.08 | FALSE |
53 | GTEx | Muscle Skeletal | UROD | 0.05 | 0.01 | enet | 14 | 0.02 | 3.4e-03 | -4.50 | 5.8 | 6.5e-09 | -0.25 | 0.18 | 0.06 | TRUE |
54 | GTEx | Muscle Skeletal | GPBP1L1 | 0.03 | 0.02 | enet | 19 | 0.03 | 7.2e-04 | -11.72 | 17.1 | 9.5e-66 | -0.71 | 0.41 | 0.32 | FALSE |
55 | GTEx | Muscle Skeletal | IPP | 0.15 | 0.01 | enet | 7 | 0.04 | 6.4e-05 | -5.67 | 13.0 | 2.3e-38 | -0.67 | 0.14 | 0.70 | FALSE |
56 | GTEx | Muscle Skeletal | RP11-767N6.7 | 0.06 | 0.06 | lasso | 3 | 0.04 | 6.6e-05 | 9.48 | 10.9 | 1.8e-27 | -0.25 | 0.76 | 0.05 | FALSE |
57 | GTEx | Nerve Tibial | TESK2 | 0.07 | 0.00 | lasso | 13 | 0.00 | 3.5e-01 | -11.04 | -9.4 | 6.8e-21 | 0.30 | 0.36 | 0.03 | TRUE |
58 | GTEx | Nerve Tibial | MAST2 | 0.08 | 0.05 | lasso | 4 | 0.06 | 5.6e-05 | 9.34 | 6.0 | 1.6e-09 | 0.04 | 0.74 | 0.03 | FALSE |
59 | GTEx | Nerve Tibial | CCDC23 | 0.17 | 0.08 | lasso | 8 | 0.09 | 1.0e-06 | 4.93 | 5.2 | 1.9e-07 | -0.03 | 0.01 | 0.98 | FALSE |
60 | GTEx | Nerve Tibial | IPP | 0.07 | 0.04 | enet | 12 | 0.05 | 1.9e-04 | 9.15 | 9.7 | 4.5e-22 | -0.28 | 0.67 | 0.02 | FALSE |
61 | GTEx | Skin Not Sun Exposed Suprapubic | CCDC17 | 0.10 | 0.13 | lasso | 6 | 0.13 | 9.6e-08 | -11.69 | 12.6 | 2.4e-36 | -0.42 | 1.00 | 0.00 | FALSE |
62 | GTEx | Skin Not Sun Exposed Suprapubic | GPBP1L1 | 0.09 | 0.02 | enet | 11 | 0.02 | 3.5e-02 | -11.98 | 16.0 | 2.1e-57 | -0.68 | 0.36 | 0.56 | FALSE |
63 | GTEx | Skin Sun Exposed Lower leg | TESK2 | 0.07 | 0.01 | enet | 26 | 0.04 | 3.0e-04 | -11.67 | -13.0 | 1.6e-38 | 0.58 | 0.06 | 0.71 | FALSE |
64 | GTEx | Skin Sun Exposed Lower leg | GPBP1L1 | 0.03 | 0.00 | lasso | 5 | 0.00 | 4.8e-01 | 2.43 | 6.5 | 6.2e-11 | -0.10 | 0.16 | 0.03 | FALSE |
65 | GTEx | Skin Sun Exposed Lower leg | RP11-767N6.2 | 0.05 | 0.01 | enet | 13 | 0.02 | 1.6e-02 | -11.75 | -12.9 | 4.4e-38 | 0.49 | 0.51 | 0.27 | FALSE |
66 | GTEx | Small Intestine Terminal Ileum | CCDC163P | 0.63 | 0.40 | enet | 35 | 0.42 | 1.7e-10 | 2.96 | 5.2 | 1.6e-07 | -0.32 | 0.93 | 0.02 | FALSE |
67 | GTEx | Stomach | MUTYH | 0.08 | 0.02 | lasso | 4 | 0.02 | 4.1e-02 | -11.04 | 15.7 | 1.2e-55 | -0.72 | 0.08 | 0.51 | FALSE |
68 | GTEx | Stomach | RP11-767N6.7 | 0.08 | 0.03 | enet | 16 | 0.05 | 1.3e-03 | 9.40 | 10.5 | 7.6e-26 | -0.19 | 0.38 | 0.04 | FALSE |
69 | GTEx | Testis | TESK2 | 0.15 | 0.01 | lasso | 3 | 0.04 | 8.4e-03 | -17.16 | -17.3 | 3.9e-67 | 0.87 | 0.05 | 0.91 | FALSE |
70 | GTEx | Testis | PRDX1 | 0.22 | 0.00 | enet | 19 | 0.05 | 2.2e-03 | 11.89 | -15.9 | 1.2e-56 | 0.50 | 0.08 | 0.40 | FALSE |
71 | GTEx | Testis | PIK3R3 | 0.08 | 0.05 | enet | 7 | 0.06 | 1.5e-03 | -11.69 | 11.8 | 4.9e-32 | -0.42 | 0.51 | 0.11 | FALSE |
72 | GTEx | Testis | GPBP1L1 | 0.07 | 0.06 | enet | 7 | 0.03 | 1.7e-02 | 9.15 | 11.2 | 4.6e-29 | -0.27 | 0.38 | 0.10 | FALSE |
73 | GTEx | Testis | CCDC23 | 0.29 | 0.24 | lasso | 4 | 0.23 | 1.1e-10 | 4.77 | 5.2 | 1.6e-07 | -0.03 | 0.02 | 0.97 | FALSE |
74 | GTEx | Testis | IPP | 0.05 | 0.06 | enet | 8 | 0.03 | 1.4e-02 | -11.89 | -14.8 | 1.7e-49 | 0.60 | 0.18 | 0.47 | FALSE |
75 | GTEx | Testis | RP11-767N6.2 | 0.05 | 0.00 | enet | 14 | 0.01 | 1.1e-01 | -11.89 | -14.6 | 2.9e-48 | 0.61 | 0.18 | 0.32 | FALSE |
76 | GTEx | Thyroid | MAST2 | 0.06 | 0.05 | lasso | 4 | 0.04 | 4.9e-04 | -11.39 | 11.8 | 4.4e-32 | -0.34 | 0.81 | 0.01 | FALSE |
77 | GTEx | Thyroid | PRDX1 | 0.23 | 0.26 | lasso | 7 | 0.28 | 6.1e-22 | -17.83 | 16.5 | 2.7e-61 | -0.95 | 0.00 | 1.00 | FALSE |
78 | GTEx | Thyroid | CCDC17 | 0.05 | 0.08 | lasso | 2 | 0.08 | 1.1e-06 | -10.12 | 10.0 | 2.0e-23 | -0.24 | 0.70 | 0.05 | FALSE |
79 | GTEx | Thyroid | GPBP1L1 | 0.05 | 0.06 | enet | 6 | 0.07 | 7.9e-06 | -9.05 | 11.4 | 5.7e-30 | -0.28 | 0.95 | 0.01 | FALSE |
80 | GTEx | Thyroid | ZSWIM5 | 0.12 | 0.08 | enet | 13 | 0.07 | 5.9e-06 | -6.76 | -6.9 | 4.7e-12 | 0.61 | 0.52 | 0.26 | FALSE |
81 | GTEx | Thyroid | IPP | 0.08 | 0.07 | lasso | 3 | 0.08 | 7.1e-07 | 9.23 | 9.3 | 1.4e-20 | -0.12 | 0.99 | 0.00 | FALSE |
82 | GTEx | Uterus | MAST2 | 0.30 | 0.28 | lasso | 2 | 0.18 | 2.0e-04 | 9.34 | 9.3 | 9.6e-21 | -0.09 | 0.68 | 0.02 | FALSE |
83 | GTEx | Uterus | UROD | 0.19 | -0.01 | enet | 15 | 0.00 | 3.3e-01 | -0.49 | 8.2 | 3.1e-16 | -0.39 | 0.07 | 0.18 | FALSE |
84 | GTEx | Whole Blood | TESK2 | 0.14 | 0.05 | enet | 23 | 0.11 | 5.6e-10 | 11.87 | -16.1 | 5.5e-58 | 0.79 | 0.05 | 0.95 | FALSE |
85 | GTEx | Whole Blood | MAST2 | 0.03 | 0.02 | lasso | 3 | 0.02 | 2.9e-03 | -11.80 | 11.0 | 4.4e-28 | -0.38 | 0.43 | 0.12 | FALSE |
86 | GTEx | Whole Blood | RP1-18D14.7 | 0.15 | 0.13 | enet | 17 | 0.13 | 7.7e-12 | 7.57 | -5.9 | 3.3e-09 | 0.08 | 0.01 | 0.99 | FALSE |
87 | METSIM | Adipose | CCDC17 | 0.03 | 0.02 | blup | 287 | 0.01 | 5.6e-03 | 9.22 | 5.9 | 3.3e-09 | -0.02 | 0.42 | 0.02 | FALSE |
88 | METSIM | Adipose | EIF2B3 | 0.04 | 0.00 | bslmm | 366 | 0.01 | 2.2e-03 | -2.82 | -8.9 | 7.1e-19 | 0.31 | 0.28 | 0.13 | FALSE |
89 | METSIM | Adipose | MAST2 | 0.06 | 0.06 | lasso | 6 | 0.05 | 1.3e-08 | 9.34 | 10.1 | 3.5e-24 | -0.14 | 1.00 | 0.00 | FALSE |
90 | METSIM | Adipose | MUTYH | 0.07 | 0.04 | blup | 286 | 0.05 | 1.8e-07 | -11.04 | 14.3 | 3.0e-46 | -0.68 | 0.96 | 0.04 | FALSE |
91 | METSIM | Adipose | POMGNT1 | 0.03 | 0.00 | bslmm | 356 | 0.01 | 4.0e-03 | -1.94 | -5.8 | 5.7e-09 | 0.20 | 0.57 | 0.22 | FALSE |
92 | NTR | Blood | PIK3R3 | 0.01 | 0.02 | lasso | 2 | 0.02 | 4.5e-06 | 9.27 | 9.6 | 1.1e-21 | -0.12 | 0.98 | 0.00 | FALSE |
93 | ROSMAP | Brain Pre-frontal Cortex | TESK2 | 0.16 | 0.20 | enet | 16 | 0.20 | 3.9e-25 | -17.13 | -18.0 | 3.2e-72 | 0.94 | 0.24 | 0.76 | FALSE |
94 | ROSMAP | Brain Pre-frontal Cortex | MMACHC | 0.04 | 0.01 | blup | 274 | 0.02 | 1.4e-03 | 11.88 | -17.0 | 1.6e-64 | 0.57 | 0.35 | 0.51 | FALSE |
95 | ROSMAP | Brain Pre-frontal Cortex | MUTYH | 0.04 | 0.04 | blup | 282 | 0.03 | 3.7e-05 | -11.04 | -10.5 | 7.0e-26 | 0.54 | 0.85 | 0.07 | FALSE |
96 | ROSMAP | Brain Pre-frontal Cortex | CMPK1 | 0.10 | 0.07 | enet | 16 | 0.07 | 6.7e-09 | 5.47 | -5.3 | 9.8e-08 | 0.00 | 0.98 | 0.02 | FALSE |
97 | ROSMAP | Brain Pre-frontal Cortex | IPP | 0.08 | 0.15 | lasso | 9 | 0.14 | 5.0e-18 | -12.12 | 11.8 | 3.9e-32 | -0.43 | 1.00 | 0.00 | FALSE |
98 | ROSMAP | Brain Pre-frontal Cortex | RPS15AP10 | 0.03 | 0.05 | blup | 283 | 0.04 | 8.0e-06 | -11.47 | -13.7 | 5.5e-43 | 0.58 | 0.99 | 0.00 | FALSE |
99 | YFS | Blood | CCDC17 | 0.04 | 0.02 | lasso | 8 | 0.02 | 6.8e-08 | -11.87 | 12.1 | 1.3e-33 | -0.37 | 1.00 | 0.00 | FALSE |
100 | YFS | Blood | IPP | 0.10 | 0.11 | lasso | 15 | 0.12 | 4.6e-36 | -11.88 | 12.2 | 2.5e-34 | -0.42 | 1.00 | 0.00 | FALSE |
101 | YFS | Blood | PRDX1 | 0.16 | 0.06 | lasso | 6 | 0.11 | 4.8e-35 | 3.40 | 10.0 | 2.2e-23 | -0.60 | 1.00 | 0.00 | FALSE |
102 | YFS | Blood | TAL1 | 0.03 | 0.02 | bslmm | 402 | 0.02 | 2.6e-06 | 7.57 | -7.7 | 1.1e-14 | 0.07 | 0.01 | 0.99 | TRUE |
103 | YFS | Blood | TMEM69 | 0.02 | 0.01 | bslmm | 294 | 0.01 | 2.1e-04 | 6.15 | 11.7 | 1.8e-31 | -0.39 | 0.41 | 0.05 | FALSE |
104 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | MUTYH | 0.11 | 0.03 | blup | 36 | 0.04 | 1.8e-04 | -17.13 | 11.3 | 1.4e-29 | -0.69 | 0.02 | 0.75 | FALSE |
105 | The Cancer Genome Atlas | Breast Invasive Carcinoma | GPBP1L1 | 0.01 | 0.02 | lasso | 2 | 0.02 | 1.2e-04 | -11.82 | 11.8 | 3.2e-32 | -0.43 | 0.04 | 0.92 | FALSE |
106 | The Cancer Genome Atlas | Breast Invasive Carcinoma | MMACHC | 0.01 | 0.00 | blup | 41 | 0.01 | 5.4e-03 | 11.54 | -7.0 | 2.4e-12 | 0.22 | 0.05 | 0.02 | FALSE |
107 | The Cancer Genome Atlas | Breast Invasive Carcinoma | MUTYH | 0.20 | 0.05 | blup | 36 | 0.10 | 3.0e-19 | 2.14 | 6.6 | 3.9e-11 | -0.32 | 0.93 | 0.07 | FALSE |
108 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | GPBP1L1 | 0.05 | 0.05 | blup | 51 | 0.06 | 1.0e-03 | -12.12 | 11.3 | 1.2e-29 | -0.44 | 0.02 | 0.86 | FALSE |
109 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | TIE1 | 0.24 | 0.02 | enet | 15 | 0.11 | 5.7e-06 | 2.62 | 5.9 | 3.4e-09 | 0.03 | 0.01 | 0.42 | TRUE |
110 | The Cancer Genome Atlas | Colon Adenocarcinoma | MUTYH | 0.17 | 0.02 | enet | 12 | 0.11 | 1.1e-06 | -17.18 | 13.1 | 5.4e-39 | -0.58 | 0.01 | 0.59 | FALSE |
111 | The Cancer Genome Atlas | Colon Adenocarcinoma | TESK2 | 0.17 | 0.02 | enet | 17 | 0.04 | 1.6e-03 | -17.83 | -11.6 | 5.6e-31 | 0.78 | 0.01 | 0.96 | FALSE |
112 | The Cancer Genome Atlas | Esophageal Carcinoma | MUTYH | 0.16 | 0.02 | blup | 36 | 0.08 | 2.0e-03 | -17.57 | 15.1 | 1.7e-51 | -0.82 | 0.01 | 0.74 | FALSE |
113 | The Cancer Genome Atlas | Glioblastoma Multiforme | MUTYH | 0.16 | 0.10 | blup | 36 | 0.09 | 8.1e-04 | -17.16 | 16.8 | 1.7e-63 | -0.86 | 0.01 | 0.91 | FALSE |
114 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | MUTYH | 0.14 | 0.00 | blup | 36 | 0.04 | 3.4e-05 | -17.13 | 14.7 | 3.5e-49 | -0.65 | 0.02 | 0.88 | FALSE |
115 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CCDC23 | 0.11 | 0.08 | blup | 45 | 0.11 | 4.5e-12 | 4.91 | 5.5 | 4.2e-08 | -0.05 | 0.01 | 0.98 | FALSE |
116 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | GPBP1L1 | 0.03 | 0.04 | lasso | 1 | 0.03 | 8.0e-05 | -12.00 | 12.0 | 3.6e-33 | -0.42 | 0.03 | 0.94 | FALSE |
117 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | HECTD3 | 0.02 | 0.02 | blup | 35 | 0.02 | 1.8e-03 | -4.98 | 5.5 | 4.9e-08 | -0.24 | 0.05 | 0.19 | FALSE |
118 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MUTYH | 0.24 | 0.03 | enet | 14 | 0.15 | 3.2e-16 | 2.14 | 9.1 | 6.1e-20 | -0.53 | 0.03 | 0.97 | FALSE |
119 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | TESK2 | 0.02 | 0.01 | blup | 82 | 0.02 | 2.0e-03 | -17.16 | 13.0 | 1.6e-38 | -0.79 | 0.05 | 0.75 | FALSE |
120 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | UROD | 0.06 | 0.08 | blup | 34 | 0.09 | 1.7e-10 | -4.97 | 7.8 | 4.7e-15 | -0.31 | 0.83 | 0.17 | TRUE |
121 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | GPBP1L1 | 0.07 | 0.10 | lasso | 3 | 0.09 | 6.3e-06 | -11.82 | 11.8 | 3.0e-32 | -0.43 | 0.03 | 0.97 | FALSE |
122 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | MMACHC | 0.10 | 0.11 | lasso | 2 | 0.11 | 6.6e-07 | -11.54 | -12.1 | 7.3e-34 | 0.57 | 0.59 | 0.33 | FALSE |
123 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | MUTYH | 0.30 | 0.06 | blup | 36 | 0.12 | 1.8e-07 | -17.16 | 11.7 | 7.3e-32 | -0.62 | 0.02 | 0.98 | FALSE |
124 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | POMGNT1 | 0.09 | 0.02 | blup | 35 | 0.04 | 1.5e-03 | -7.34 | -8.1 | 4.5e-16 | 0.23 | 0.02 | 0.21 | FALSE |
125 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | UROD | 0.13 | 0.02 | blup | 34 | 0.04 | 2.5e-03 | -10.16 | 6.2 | 6.2e-10 | -0.15 | 0.00 | 0.97 | FALSE |
126 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CCDC23 | 0.23 | 0.14 | lasso | 6 | 0.15 | 3.7e-17 | 4.82 | 5.2 | 2.4e-07 | -0.04 | 0.01 | 0.98 | FALSE |
127 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MMACHC | 0.06 | 0.02 | enet | 9 | 0.05 | 2.7e-06 | 3.35 | -11.2 | 6.2e-29 | 0.72 | 0.58 | 0.39 | FALSE |
128 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MUTYH | 0.37 | 0.13 | enet | 19 | 0.23 | 6.8e-26 | 2.14 | 10.3 | 5.7e-25 | -0.49 | 1.00 | 0.00 | FALSE |
129 | The Cancer Genome Atlas | Brain Lower Grade Glioma | TESK2 | 0.05 | 0.02 | blup | 82 | 0.04 | 3.4e-05 | -17.16 | -17.4 | 8.4e-68 | 0.88 | 0.02 | 0.98 | FALSE |
130 | The Cancer Genome Atlas | Lung Adenocarcinoma | MMACHC | 0.04 | 0.03 | blup | 41 | 0.03 | 3.0e-04 | 11.97 | -11.1 | 1.2e-28 | 0.37 | 0.14 | 0.07 | FALSE |
131 | The Cancer Genome Atlas | Lung Adenocarcinoma | MUTYH | 0.16 | 0.03 | enet | 12 | 0.06 | 3.0e-07 | -3.22 | 7.1 | 9.3e-13 | -0.20 | 0.36 | 0.07 | FALSE |
132 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | MUTYH | 0.17 | 0.01 | blup | 36 | 0.06 | 3.1e-07 | 2.14 | 5.6 | 2.4e-08 | -0.21 | 0.02 | 0.22 | FALSE |
133 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | MMACHC | 0.07 | 0.02 | blup | 41 | 0.03 | 4.2e-03 | 11.89 | -5.3 | 1.4e-07 | 0.10 | 0.17 | 0.03 | FALSE |
134 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | RPS15AP10 | 0.04 | 0.02 | enet | 18 | 0.02 | 1.4e-02 | -11.87 | -11.0 | 5.0e-28 | 0.40 | 0.02 | 0.89 | FALSE |
135 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | CCDC23 | 0.09 | 0.06 | lasso | 3 | 0.08 | 4.1e-04 | 4.93 | 5.5 | 4.8e-08 | -0.04 | 0.01 | 0.84 | FALSE |
136 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | MUTYH | 0.12 | 0.00 | blup | 36 | 0.04 | 1.2e-02 | -17.36 | 14.5 | 6.4e-48 | -0.76 | 0.01 | 0.43 | FALSE |
137 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | MMACHC | 0.16 | 0.12 | blup | 41 | 0.12 | 2.1e-05 | -17.74 | -18.5 | 3.7e-76 | 0.95 | 0.01 | 0.99 | TRUE |
138 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GPBP1L1 | 0.04 | 0.04 | blup | 50 | 0.04 | 2.9e-05 | -11.83 | 12.3 | 9.5e-35 | -0.39 | 0.04 | 0.95 | FALSE |
139 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MMACHC | 0.07 | 0.05 | enet | 12 | 0.09 | 3.1e-09 | 11.88 | -7.5 | 4.8e-14 | 0.25 | 1.00 | 0.00 | FALSE |
140 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MUTYH | 0.37 | 0.09 | enet | 17 | 0.21 | 3.3e-21 | 2.14 | 9.9 | 5.1e-23 | -0.46 | 0.68 | 0.32 | FALSE |
141 | The Cancer Genome Atlas | Prostate Adenocarcinoma | POMGNT1 | 0.03 | 0.02 | blup | 35 | 0.02 | 3.7e-03 | -7.34 | -5.2 | 2.5e-07 | 0.24 | 0.02 | 0.12 | FALSE |
142 | The Cancer Genome Atlas | Soft Tissue Sarcoma | MUTYH | 0.15 | 0.04 | lasso | 3 | 0.09 | 5.3e-06 | -17.13 | 18.4 | 1.2e-75 | -0.79 | 0.02 | 0.98 | FALSE |
143 | The Cancer Genome Atlas | Stomach Adenocarcinoma | CCDC163P | 0.10 | 0.12 | blup | 36 | 0.12 | 7.5e-09 | 3.26 | 6.6 | 4.0e-11 | -0.54 | 1.00 | 0.00 | FALSE |
144 | The Cancer Genome Atlas | Stomach Adenocarcinoma | IPP | 0.04 | 0.04 | blup | 47 | 0.04 | 1.4e-03 | -11.47 | 12.3 | 6.0e-35 | -0.37 | 0.02 | 0.81 | FALSE |
145 | The Cancer Genome Atlas | Stomach Adenocarcinoma | TMEM69 | 0.10 | 0.05 | lasso | 2 | 0.04 | 5.9e-04 | 9.48 | 9.5 | 2.6e-21 | -0.14 | 0.22 | 0.15 | FALSE |
146 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | CCDC163P | 0.09 | 0.03 | blup | 36 | 0.06 | 3.4e-03 | 3.26 | 7.4 | 1.2e-13 | -0.55 | 0.05 | 0.19 | FALSE |
147 | The Cancer Genome Atlas | Thyroid Carcinoma | CCDC23 | 0.08 | 0.09 | lasso | 3 | 0.10 | 1.2e-09 | 4.77 | 5.4 | 6.6e-08 | -0.03 | 0.01 | 0.98 | FALSE |
148 | The Cancer Genome Atlas | Thyroid Carcinoma | GPBP1L1 | 0.11 | 0.06 | lasso | 3 | 0.06 | 1.6e-06 | -11.83 | 12.2 | 4.7e-34 | -0.39 | 0.03 | 0.97 | FALSE |
149 | The Cancer Genome Atlas | Thyroid Carcinoma | LOC400752 | 0.08 | 0.00 | blup | 30 | 0.01 | 4.7e-02 | 6.58 | -7.6 | 3.9e-14 | 0.18 | 0.00 | 0.03 | FALSE |
150 | The Cancer Genome Atlas | Thyroid Carcinoma | MAST2 | 0.04 | 0.01 | blup | 97 | 0.02 | 1.8e-03 | -11.35 | 8.3 | 7.3e-17 | -0.39 | 0.06 | 0.53 | FALSE |
151 | The Cancer Genome Atlas | Thyroid Carcinoma | MMACHC | 0.09 | 0.05 | blup | 41 | 0.06 | 2.5e-06 | 11.99 | -13.3 | 2.1e-40 | 0.55 | 0.96 | 0.02 | FALSE |
152 | The Cancer Genome Atlas | Thyroid Carcinoma | MUTYH | 0.53 | 0.08 | enet | 14 | 0.28 | 3.8e-27 | -17.58 | 11.7 | 1.3e-31 | -0.60 | 0.01 | 0.99 | FALSE |
153 | The Cancer Genome Atlas | Thyroid Carcinoma | PIK3R3 | 0.05 | 0.01 | blup | 64 | 0.04 | 4.4e-05 | -6.86 | 8.6 | 8.1e-18 | -0.24 | 0.29 | 0.08 | FALSE |
154 | The Cancer Genome Atlas | Thyroid Carcinoma | PRDX1 | 0.18 | 0.20 | lasso | 6 | 0.28 | 7.9e-27 | -17.79 | 12.7 | 8.8e-37 | -0.84 | 0.01 | 0.99 | FALSE |
155 | The Cancer Genome Atlas | Thyroid Carcinoma | TESK2 | 0.02 | 0.01 | blup | 82 | 0.01 | 1.9e-02 | -17.18 | -17.8 | 1.4e-70 | 0.93 | 0.06 | 0.70 | FALSE |