Best TWAS P=1.39e-33 · Best GWAS P=5.92e-31 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | DTX2P1-UPK3BP1-PMS2P11 | 0.18 | 0.09 | enet | 21 | 0.12 | 6.1e-15 | 8.7 | 10.3 | 7.9e-25 | -0.10 | 0.00 | 1.00 | TRUE |
2 | CommonMind | Brain Pre-frontal Cortex | PMS2P5 | 0.29 | 0.05 | enet | 20 | 0.14 | 7.3e-17 | 6.6 | -5.5 | 3.1e-08 | 0.20 | 0.14 | 0.86 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | POM121C | 0.08 | 0.05 | lasso | 2 | 0.04 | 1.1e-05 | -11.6 | -11.3 | 9.3e-30 | 0.99 | 0.00 | 1.00 | FALSE |
4 | CommonMind | Brain Pre-frontal Cortex | RSBN1L | 0.09 | 0.09 | enet | 9 | 0.09 | 2.0e-11 | -5.2 | -5.1 | 3.0e-07 | 0.04 | 0.95 | 0.05 | FALSE |
5 | CommonMind | Brain Pre-frontal Cortex | STAG3L1 | 0.23 | 0.14 | enet | 13 | 0.17 | 1.0e-19 | -11.6 | -11.0 | 4.9e-28 | 0.91 | 0.00 | 1.00 | FALSE |
6 | CommonMind | Brain Pre-frontal Cortex | STAG3L2 | 0.33 | 0.09 | enet | 3 | 0.18 | 7.3e-21 | 3.4 | -6.3 | 3.0e-10 | 0.19 | 0.84 | 0.16 | FALSE |
7 | GTEx | Adipose Subcutaneous | PMS2P3 | 0.15 | 0.12 | lasso | 3 | 0.10 | 9.8e-09 | -10.7 | -11.0 | 6.3e-28 | 0.96 | 0.00 | 1.00 | FALSE |
8 | GTEx | Adipose Subcutaneous | TMEM60 | 0.08 | 0.05 | lasso | 4 | 0.05 | 7.3e-05 | -5.1 | -5.2 | 2.5e-07 | 0.01 | 0.88 | 0.06 | FALSE |
9 | GTEx | Adipose Subcutaneous | POM121C | 0.20 | 0.11 | enet | 18 | 0.12 | 1.2e-09 | -11.6 | -9.6 | 6.4e-22 | 0.80 | 0.00 | 1.00 | FALSE |
10 | GTEx | Adipose Subcutaneous | STAG3L2 | 0.16 | 0.03 | enet | 11 | 0.09 | 1.0e-07 | 6.6 | -6.9 | 6.9e-12 | 0.22 | 0.12 | 0.86 | FALSE |
11 | GTEx | Adipose Subcutaneous | TRIM73 | 0.20 | 0.12 | enet | 26 | 0.12 | 2.0e-10 | -11.6 | -9.8 | 1.0e-22 | 0.82 | 0.00 | 1.00 | FALSE |
12 | GTEx | Adipose Subcutaneous | AC004166.6 | 0.09 | 0.08 | lasso | 2 | 0.07 | 3.9e-06 | 4.8 | 5.2 | 2.3e-07 | -0.05 | 0.28 | 0.62 | FALSE |
13 | GTEx | Adipose Subcutaneous | STAG3L1 | 0.30 | 0.24 | enet | 24 | 0.27 | 2.4e-22 | -11.6 | -11.4 | 2.6e-30 | 0.92 | 0.00 | 1.00 | FALSE |
14 | GTEx | Adipose Subcutaneous | RP11-467H10.2 | 0.12 | 0.00 | lasso | 6 | 0.01 | 2.1e-02 | 2.1 | 5.5 | 4.7e-08 | -0.04 | 0.13 | 0.04 | FALSE |
15 | GTEx | Adipose Visceral Omentum | POM121C | 0.16 | 0.10 | lasso | 5 | 0.12 | 7.2e-07 | 6.9 | -8.8 | 1.5e-18 | 0.80 | 0.02 | 0.98 | FALSE |
16 | GTEx | Adipose Visceral Omentum | TRIM73 | 0.17 | 0.19 | lasso | 3 | 0.22 | 1.4e-11 | -10.7 | -9.5 | 3.1e-21 | 0.92 | 0.00 | 1.00 | FALSE |
17 | GTEx | Adipose Visceral Omentum | STAG3L1 | 0.20 | 0.19 | lasso | 3 | 0.17 | 2.3e-09 | -11.6 | -11.5 | 2.2e-30 | 1.00 | 0.00 | 1.00 | FALSE |
18 | GTEx | Adrenal Gland | STAG3L2 | 0.14 | 0.07 | enet | 3 | 0.11 | 1.2e-04 | 6.4 | -6.8 | 7.8e-12 | 0.13 | 0.03 | 0.69 | FALSE |
19 | GTEx | Artery Aorta | PMS2P5 | 0.33 | 0.10 | lasso | 6 | 0.17 | 1.3e-09 | 6.6 | -6.5 | 8.2e-11 | 0.17 | 0.12 | 0.87 | FALSE |
20 | GTEx | Artery Aorta | STAG3L2 | 0.18 | 0.18 | lasso | 6 | 0.16 | 3.0e-09 | 6.6 | -6.7 | 3.0e-11 | 0.13 | 0.12 | 0.87 | FALSE |
21 | GTEx | Artery Aorta | GSAP | 0.19 | 0.07 | lasso | 2 | 0.04 | 2.8e-03 | 6.3 | -7.1 | 1.7e-12 | -0.01 | 0.26 | 0.03 | TRUE |
22 | GTEx | Artery Aorta | STAG3L1 | 0.18 | 0.03 | lasso | 4 | 0.08 | 3.9e-05 | -11.6 | -11.3 | 8.8e-30 | 1.00 | 0.00 | 1.00 | FALSE |
23 | GTEx | Artery Coronary | PMS2P5 | 0.15 | -0.01 | enet | 13 | 0.08 | 1.4e-03 | 6.6 | -7.4 | 1.7e-13 | 0.20 | 0.01 | 0.72 | FALSE |
24 | GTEx | Artery Coronary | STAG3L2 | 0.16 | 0.10 | lasso | 3 | 0.11 | 1.5e-04 | 6.6 | -6.7 | 3.0e-11 | 0.11 | 0.03 | 0.84 | FALSE |
25 | GTEx | Artery Coronary | STAG3L1 | 0.28 | 0.13 | lasso | 4 | 0.17 | 1.8e-06 | -10.7 | -10.9 | 1.8e-27 | 0.86 | 0.01 | 0.99 | FALSE |
26 | GTEx | Artery Tibial | PMS2P5 | 0.21 | 0.08 | lasso | 5 | 0.07 | 1.9e-06 | 6.6 | -7.2 | 6.5e-13 | 0.17 | 0.06 | 0.88 | FALSE |
27 | GTEx | Artery Tibial | TMEM60 | 0.07 | 0.05 | enet | 12 | 0.02 | 6.6e-03 | -5.4 | -5.4 | 5.3e-08 | 0.04 | 0.41 | 0.08 | FALSE |
28 | GTEx | Artery Tibial | POM121C | 0.12 | 0.10 | lasso | 1 | 0.10 | 6.8e-08 | -11.6 | -11.6 | 5.9e-31 | 1.00 | 0.00 | 1.00 | FALSE |
29 | GTEx | Artery Tibial | STAG3L2 | 0.26 | 0.12 | lasso | 4 | 0.12 | 1.7e-09 | 6.6 | -6.5 | 1.1e-10 | 0.18 | 0.13 | 0.87 | FALSE |
30 | GTEx | Artery Tibial | TRIM73 | 0.10 | 0.00 | lasso | 7 | 0.02 | 5.5e-03 | -11.6 | -8.0 | 1.6e-15 | 0.82 | 0.00 | 0.96 | FALSE |
31 | GTEx | Artery Tibial | GSAP | 0.16 | 0.05 | lasso | 5 | 0.12 | 5.2e-10 | 6.3 | -5.5 | 3.0e-08 | -0.06 | 0.94 | 0.00 | TRUE |
32 | GTEx | Artery Tibial | STAG3L1 | 0.25 | 0.19 | lasso | 4 | 0.19 | 8.3e-15 | -11.6 | -11.6 | 4.3e-31 | 1.00 | 0.00 | 1.00 | FALSE |
33 | GTEx | Artery Tibial | FAM185BP | 0.11 | 0.02 | enet | 22 | 0.02 | 1.1e-02 | 7.8 | 8.4 | 5.9e-17 | -0.04 | 0.06 | 0.42 | FALSE |
34 | GTEx | Brain Cerebellar Hemisphere | POM121C | 0.33 | 0.32 | lasso | 3 | 0.30 | 1.4e-08 | -11.6 | -11.4 | 2.9e-30 | 1.00 | 0.00 | 1.00 | FALSE |
35 | GTEx | Brain Cerebellar Hemisphere | TRIM73 | 0.35 | 0.28 | enet | 25 | 0.25 | 3.6e-07 | -11.6 | -9.0 | 2.4e-19 | 0.84 | 0.00 | 1.00 | TRUE |
36 | GTEx | Brain Cerebellum | PMS2P5 | 0.62 | 0.08 | lasso | 6 | 0.22 | 3.3e-07 | 6.6 | -7.0 | 2.3e-12 | 0.13 | 0.04 | 0.68 | TRUE |
37 | GTEx | Brain Cerebellum | POM121C | 0.30 | 0.15 | lasso | 8 | 0.08 | 2.4e-03 | -11.6 | -10.0 | 1.9e-23 | 0.90 | 0.00 | 0.97 | FALSE |
38 | GTEx | Brain Cerebellum | TRIM73 | 0.24 | 0.06 | enet | 12 | 0.14 | 8.2e-05 | -10.7 | -8.1 | 6.9e-16 | 0.83 | 0.00 | 0.98 | FALSE |
39 | GTEx | Brain Cerebellum | GSAP | 0.38 | 0.30 | lasso | 4 | 0.31 | 6.4e-10 | 6.1 | -6.4 | 1.3e-10 | -0.03 | 0.92 | 0.00 | TRUE |
40 | GTEx | Brain Cerebellum | RSBN1L | 0.14 | 0.12 | lasso | 2 | 0.13 | 1.3e-04 | 5.0 | 5.1 | 2.8e-07 | 0.00 | 0.47 | 0.06 | FALSE |
41 | GTEx | Brain Frontal Cortex BA9 | PMS2P5 | 0.53 | 0.18 | lasso | 7 | 0.28 | 4.0e-08 | 4.8 | -5.4 | 5.5e-08 | 0.05 | 0.04 | 0.45 | FALSE |
42 | GTEx | Brain Frontal Cortex BA9 | POM121C | 0.43 | 0.16 | enet | 24 | 0.17 | 3.4e-05 | -11.6 | -7.8 | 5.9e-15 | 0.81 | 0.00 | 0.98 | FALSE |
43 | GTEx | Brain Frontal Cortex BA9 | STAG3L2 | 0.28 | 0.07 | lasso | 4 | 0.11 | 9.7e-04 | 4.8 | -6.4 | 1.8e-10 | 0.11 | 0.03 | 0.53 | FALSE |
44 | GTEx | Brain Frontal Cortex BA9 | GSAP | 0.38 | 0.22 | lasso | 6 | 0.21 | 3.0e-06 | 6.2 | -7.2 | 4.2e-13 | -0.01 | 0.14 | 0.20 | FALSE |
45 | GTEx | Brain Hippocampus | PMS2P5 | 0.37 | 0.03 | enet | 12 | 0.05 | 2.9e-02 | 6.3 | -7.5 | 7.4e-14 | 0.13 | 0.01 | 0.48 | FALSE |
46 | GTEx | Brain Nucleus accumbens basal ganglia | PMS2P5 | 0.27 | 0.00 | enet | 20 | 0.03 | 6.6e-02 | 6.6 | -7.2 | 4.5e-13 | 0.18 | 0.02 | 0.32 | FALSE |
47 | GTEx | Brain Nucleus accumbens basal ganglia | POM121C | 0.33 | 0.27 | enet | 11 | 0.25 | 2.7e-07 | 6.9 | -7.4 | 1.1e-13 | 0.59 | 0.04 | 0.86 | FALSE |
48 | GTEx | Brain Nucleus accumbens basal ganglia | TRIM73 | 0.34 | 0.16 | enet | 11 | 0.29 | 1.5e-08 | 6.9 | -9.2 | 4.8e-20 | 0.82 | 0.00 | 1.00 | FALSE |
49 | GTEx | Brain Nucleus accumbens basal ganglia | STAG3L1 | 0.29 | 0.09 | enet | 13 | 0.18 | 1.9e-05 | -11.6 | -9.1 | 8.7e-20 | 0.79 | 0.00 | 0.97 | FALSE |
50 | GTEx | Brain Putamen basal ganglia | PMS2P3 | 0.37 | 0.13 | lasso | 6 | 0.18 | 6.0e-05 | -10.7 | -9.4 | 4.5e-21 | 0.73 | 0.01 | 0.85 | FALSE |
51 | GTEx | Brain Putamen basal ganglia | GSAP | 0.48 | 0.20 | lasso | 12 | 0.15 | 2.2e-04 | 6.3 | -5.3 | 1.1e-07 | -0.03 | 0.15 | 0.09 | FALSE |
52 | GTEx | Breast Mammary Tissue | PMS2P3 | 0.19 | 0.14 | lasso | 4 | 0.19 | 3.5e-10 | -10.7 | -10.4 | 2.4e-25 | 0.88 | 0.00 | 1.00 | FALSE |
53 | GTEx | Breast Mammary Tissue | STAG3L2 | 0.14 | 0.08 | lasso | 2 | 0.11 | 4.0e-06 | 6.6 | -6.6 | 3.9e-11 | 0.10 | 0.11 | 0.84 | FALSE |
54 | GTEx | Breast Mammary Tissue | STAG3L1 | 0.16 | 0.15 | lasso | 2 | 0.14 | 8.7e-08 | -11.6 | -11.7 | 8.4e-32 | 0.98 | 0.00 | 1.00 | FALSE |
55 | GTEx | Breast Mammary Tissue (Female) | PMS2P3 | 0.31 | 0.05 | enet | 8 | 0.10 | 6.2e-04 | -10.7 | -8.2 | 1.6e-16 | 0.69 | 0.02 | 0.79 | FALSE |
56 | GTEx | Breast Mammary Tissue (Female) | POM121C | 0.17 | -0.01 | lasso | 3 | 0.02 | 6.3e-02 | -11.6 | -10.5 | 1.4e-25 | 0.90 | 0.01 | 0.63 | FALSE |
57 | GTEx | Breast Mammary Tissue (Female) | STAG3L2 | 0.29 | 0.21 | lasso | 3 | 0.21 | 6.7e-07 | 4.7 | -5.1 | 2.8e-07 | 0.03 | 0.12 | 0.62 | FALSE |
58 | GTEx | Breast Mammary Tissue (Female) | STAG3L1 | 0.04 | 0.12 | lasso | 1 | 0.04 | 2.9e-02 | -11.6 | -11.6 | 5.9e-31 | 1.00 | 0.00 | 0.96 | FALSE |
59 | GTEx | Cells EBV-transformed lymphocytes | PMS2P5 | 0.16 | 0.06 | lasso | 3 | 0.04 | 1.7e-02 | 4.8 | -6.5 | 1.0e-10 | 0.11 | 0.01 | 0.78 | FALSE |
60 | GTEx | Cells EBV-transformed lymphocytes | STAG3L1 | 0.43 | 0.21 | enet | 21 | 0.23 | 3.8e-08 | -11.6 | -11.6 | 5.8e-31 | 0.86 | 0.00 | 1.00 | FALSE |
61 | GTEx | Cells Transformed fibroblasts | PMS2P5 | 0.31 | 0.16 | lasso | 5 | 0.18 | 2.1e-13 | 6.6 | -7.2 | 7.5e-13 | 0.15 | 0.12 | 0.88 | FALSE |
62 | GTEx | Cells Transformed fibroblasts | PMS2P3 | 0.23 | 0.15 | lasso | 6 | 0.15 | 1.4e-11 | -10.7 | -10.9 | 1.7e-27 | 0.94 | 0.00 | 1.00 | FALSE |
63 | GTEx | Cells Transformed fibroblasts | TMEM60 | 0.25 | 0.20 | lasso | 4 | 0.20 | 1.5e-14 | -5.4 | -5.4 | 7.0e-08 | 0.02 | 0.89 | 0.11 | FALSE |
64 | GTEx | Cells Transformed fibroblasts | POM121C | 0.15 | 0.06 | lasso | 5 | 0.07 | 1.2e-05 | -11.6 | -11.5 | 1.2e-30 | 0.99 | 0.00 | 1.00 | FALSE |
65 | GTEx | Cells Transformed fibroblasts | STAG3L2 | 0.18 | 0.16 | lasso | 5 | 0.16 | 7.5e-12 | 6.6 | -6.8 | 1.5e-11 | 0.13 | 0.12 | 0.88 | FALSE |
66 | GTEx | Cells Transformed fibroblasts | STAG3L1 | 0.22 | 0.17 | lasso | 4 | 0.18 | 2.6e-13 | -11.6 | -11.8 | 2.8e-32 | 0.96 | 0.00 | 1.00 | FALSE |
67 | GTEx | Colon Sigmoid | STAG3L1 | 0.30 | 0.18 | lasso | 4 | 0.18 | 8.5e-07 | -11.6 | -11.5 | 1.5e-30 | 0.97 | 0.00 | 1.00 | FALSE |
68 | GTEx | Colon Transverse | STAG3L1 | 0.22 | 0.18 | lasso | 1 | 0.16 | 4.0e-08 | -11.6 | -11.6 | 5.9e-31 | 1.00 | 0.00 | 1.00 | FALSE |
69 | GTEx | Esophagus Gastroesophageal Junction | PMS2P5 | 0.23 | 0.19 | lasso | 2 | 0.18 | 5.4e-07 | 4.8 | -5.5 | 2.9e-08 | 0.09 | 0.03 | 0.93 | FALSE |
70 | GTEx | Esophagus Gastroesophageal Junction | STAG3L1 | 0.36 | 0.16 | lasso | 5 | 0.16 | 1.7e-06 | -11.6 | -11.1 | 1.1e-28 | 0.93 | 0.00 | 1.00 | FALSE |
71 | GTEx | Esophagus Gastroesophageal Junction | RSBN1L-AS1 | 0.38 | 0.41 | lasso | 12 | 0.44 | 1.2e-17 | -5.5 | -5.4 | 7.8e-08 | 0.02 | 1.00 | 0.00 | FALSE |
72 | GTEx | Esophagus Mucosa | PMS2P5 | 0.14 | 0.03 | lasso | 4 | 0.04 | 1.7e-03 | 4.8 | -6.7 | 1.9e-11 | 0.14 | 0.03 | 0.68 | TRUE |
73 | GTEx | Esophagus Mucosa | PMS2P3 | 0.14 | 0.15 | lasso | 2 | 0.14 | 9.7e-10 | -11.6 | -11.7 | 1.9e-31 | 1.00 | 0.00 | 1.00 | FALSE |
74 | GTEx | Esophagus Mucosa | TMEM60 | 0.06 | 0.04 | lasso | 2 | 0.04 | 1.0e-03 | -5.4 | -5.3 | 9.8e-08 | 0.02 | 0.77 | 0.08 | FALSE |
75 | GTEx | Esophagus Mucosa | POM121C | 0.13 | 0.10 | lasso | 1 | 0.07 | 1.0e-05 | -11.6 | -11.6 | 5.9e-31 | 1.00 | 0.00 | 1.00 | FALSE |
76 | GTEx | Esophagus Mucosa | STAG3L2 | 0.23 | 0.16 | lasso | 3 | 0.16 | 1.0e-10 | 6.6 | -7.0 | 2.9e-12 | 0.13 | 0.13 | 0.87 | FALSE |
77 | GTEx | Esophagus Mucosa | STAG3L1 | 0.19 | 0.19 | lasso | 1 | 0.18 | 2.4e-12 | -11.6 | -11.6 | 5.9e-31 | 1.00 | 0.00 | 1.00 | FALSE |
78 | GTEx | Esophagus Muscularis | PMS2P3 | 0.19 | 0.01 | enet | 42 | 0.06 | 2.1e-04 | 2.3 | -5.6 | 1.8e-08 | 0.27 | 0.03 | 0.40 | FALSE |
79 | GTEx | Esophagus Muscularis | STAG3L2 | 0.23 | 0.09 | enet | 33 | 0.15 | 1.9e-09 | 6.6 | -7.3 | 3.9e-13 | 0.26 | 0.02 | 0.98 | FALSE |
80 | GTEx | Esophagus Muscularis | TRIM73 | 0.12 | 0.07 | lasso | 2 | 0.05 | 3.5e-04 | -10.7 | -10.6 | 2.3e-26 | 0.96 | 0.00 | 0.98 | FALSE |
81 | GTEx | Esophagus Muscularis | STAG3L1 | 0.30 | 0.15 | lasso | 4 | 0.16 | 4.3e-10 | -11.6 | -10.6 | 2.9e-26 | 0.94 | 0.00 | 1.00 | FALSE |
82 | GTEx | Heart Atrial Appendage | PMS2P5 | 0.12 | 0.03 | lasso | 5 | 0.07 | 3.8e-04 | 4.8 | -5.5 | 4.4e-08 | 0.02 | 0.02 | 0.23 | FALSE |
83 | GTEx | Heart Atrial Appendage | STAG3L1 | 0.14 | 0.04 | enet | 12 | 0.04 | 5.0e-03 | -10.7 | -9.8 | 1.3e-22 | 0.76 | 0.00 | 0.95 | TRUE |
84 | GTEx | Heart Left Ventricle | POM121C | 0.13 | 0.12 | lasso | 1 | 0.09 | 2.2e-05 | -11.6 | -11.6 | 5.9e-31 | 1.00 | 0.00 | 1.00 | FALSE |
85 | GTEx | Heart Left Ventricle | STAG3L2 | 0.20 | 0.12 | lasso | 3 | 0.09 | 1.9e-05 | 6.6 | -7.0 | 2.4e-12 | 0.15 | 0.08 | 0.82 | FALSE |
86 | GTEx | Heart Left Ventricle | GSAP | 0.21 | 0.02 | lasso | 5 | 0.03 | 9.3e-03 | 3.4 | -5.9 | 4.1e-09 | 0.05 | 0.12 | 0.04 | FALSE |
87 | GTEx | Liver | GSAP | 0.38 | 0.29 | lasso | 4 | 0.20 | 2.7e-06 | 5.1 | 5.2 | 2.0e-07 | -0.07 | 0.60 | 0.02 | FALSE |
88 | GTEx | Lung | POM121C | 0.13 | 0.10 | lasso | 3 | 0.10 | 7.8e-08 | -11.6 | -11.7 | 1.1e-31 | 0.98 | 0.00 | 1.00 | FALSE |
89 | GTEx | Lung | STAG3L2 | 0.13 | 0.11 | enet | 11 | 0.09 | 1.4e-07 | 6.6 | -6.8 | 1.0e-11 | 0.15 | 0.11 | 0.88 | FALSE |
90 | GTEx | Lung | TRIM73 | 0.14 | 0.03 | enet | 8 | 0.06 | 2.9e-05 | -10.7 | -8.6 | 9.7e-18 | 0.79 | 0.00 | 0.99 | FALSE |
91 | GTEx | Lung | STAG3L1 | 0.28 | 0.12 | enet | 35 | 0.16 | 3.3e-12 | -11.6 | -9.4 | 4.0e-21 | 0.79 | 0.00 | 1.00 | FALSE |
92 | GTEx | Muscle Skeletal | PMS2P5 | 0.34 | 0.04 | enet | 22 | 0.14 | 1.6e-13 | 6.6 | -5.5 | 4.1e-08 | 0.13 | 0.18 | 0.78 | FALSE |
93 | GTEx | Muscle Skeletal | PMS2P3 | 0.07 | 0.07 | lasso | 2 | 0.06 | 3.8e-06 | -11.6 | -11.6 | 4.3e-31 | 1.00 | 0.00 | 1.00 | FALSE |
94 | GTEx | Muscle Skeletal | TMEM60 | 0.11 | 0.12 | lasso | 4 | 0.12 | 4.6e-12 | -5.4 | 5.5 | 3.0e-08 | -0.03 | 0.89 | 0.11 | FALSE |
95 | GTEx | Muscle Skeletal | STAG3L2 | 0.17 | 0.12 | lasso | 4 | 0.12 | 9.0e-12 | 6.6 | -6.9 | 5.5e-12 | 0.16 | 0.13 | 0.87 | FALSE |
96 | GTEx | Muscle Skeletal | TRIM73 | 0.08 | 0.05 | enet | 11 | 0.06 | 3.4e-06 | -11.6 | -11.1 | 1.4e-28 | 0.88 | 0.00 | 1.00 | FALSE |
97 | GTEx | Muscle Skeletal | GSAP | 0.20 | 0.12 | lasso | 2 | 0.12 | 1.8e-11 | 6.2 | -6.2 | 5.6e-10 | -0.01 | 1.00 | 0.00 | FALSE |
98 | GTEx | Muscle Skeletal | STAG3L1 | 0.16 | 0.10 | enet | 24 | 0.10 | 3.7e-10 | -11.6 | -9.8 | 1.8e-22 | 0.85 | 0.00 | 1.00 | FALSE |
99 | GTEx | Nerve Tibial | PMS2P5 | 0.16 | 0.04 | enet | 34 | 0.08 | 3.5e-06 | 6.6 | -7.8 | 9.3e-15 | 0.22 | 0.02 | 0.97 | TRUE |
100 | GTEx | Nerve Tibial | PMS2P3 | 0.29 | 0.13 | enet | 4 | 0.18 | 1.1e-12 | -10.7 | -10.3 | 6.8e-25 | 0.87 | 0.03 | 0.97 | FALSE |
101 | GTEx | Nerve Tibial | CCDC146 | 0.28 | 0.00 | lasso | 6 | 0.02 | 1.5e-02 | 3.5 | -5.8 | 6.5e-09 | 0.03 | 0.09 | 0.04 | FALSE |
102 | GTEx | Nerve Tibial | TMEM60 | 0.14 | 0.14 | lasso | 8 | 0.12 | 1.1e-08 | -5.4 | -5.5 | 5.2e-08 | 0.02 | 0.93 | 0.07 | FALSE |
103 | GTEx | Nerve Tibial | POM121C | 0.22 | 0.14 | lasso | 5 | 0.14 | 6.9e-10 | -11.6 | -11.2 | 2.3e-29 | 0.97 | 0.00 | 1.00 | FALSE |
104 | GTEx | Nerve Tibial | STAG3L2 | 0.36 | 0.09 | enet | 13 | 0.24 | 9.5e-17 | 6.6 | -7.7 | 9.6e-15 | 0.25 | 0.06 | 0.94 | FALSE |
105 | GTEx | Nerve Tibial | TRIM73 | 0.19 | 0.20 | enet | 6 | 0.20 | 6.3e-14 | -11.6 | -10.4 | 2.3e-25 | 0.96 | 0.00 | 1.00 | FALSE |
106 | GTEx | Nerve Tibial | GTF2IRD2 | 0.08 | 0.09 | lasso | 2 | 0.08 | 5.4e-06 | 6.6 | 6.7 | 2.6e-11 | -0.11 | 0.13 | 0.82 | FALSE |
107 | GTEx | Nerve Tibial | STAG3L1 | 0.37 | 0.21 | enet | 34 | 0.22 | 1.2e-15 | -11.6 | -8.7 | 3.9e-18 | 0.83 | 0.00 | 1.00 | FALSE |
108 | GTEx | Ovary | RHBDD2 | 0.55 | 0.00 | enet | 24 | 0.07 | 7.6e-03 | -10.7 | 8.0 | 1.2e-15 | -0.56 | 0.03 | 0.29 | FALSE |
109 | GTEx | Ovary | CLIP2 | 0.24 | -0.01 | enet | 35 | 0.00 | 3.7e-01 | 2.1 | 5.8 | 7.6e-09 | 0.01 | 0.04 | 0.10 | FALSE |
110 | GTEx | Ovary | GSAP | 0.27 | -0.01 | lasso | 7 | 0.02 | 1.3e-01 | 6.2 | -6.3 | 2.3e-10 | -0.01 | 0.05 | 0.13 | FALSE |
111 | GTEx | Pituitary | TMEM60 | 0.19 | 0.06 | lasso | 6 | 0.04 | 2.8e-02 | 5.0 | -5.4 | 7.8e-08 | 0.02 | 0.36 | 0.06 | FALSE |
112 | GTEx | Skin Not Sun Exposed Suprapubic | MLXIPL | 0.11 | 0.11 | lasso | 3 | 0.06 | 2.7e-04 | 5.0 | 5.2 | 1.8e-07 | -0.01 | 0.01 | 0.97 | TRUE |
113 | GTEx | Skin Not Sun Exposed Suprapubic | PMS2P3 | 0.26 | 0.19 | lasso | 3 | 0.17 | 1.3e-09 | -11.6 | -11.4 | 5.7e-30 | 0.99 | 0.00 | 1.00 | FALSE |
114 | GTEx | Skin Not Sun Exposed Suprapubic | TMEM60 | 0.14 | 0.08 | lasso | 4 | 0.03 | 1.4e-02 | -5.4 | -5.2 | 2.3e-07 | 0.01 | 0.55 | 0.07 | FALSE |
115 | GTEx | Skin Not Sun Exposed Suprapubic | STAG3L1 | 0.13 | 0.19 | lasso | 1 | 0.18 | 2.6e-10 | -11.6 | -11.6 | 5.9e-31 | 1.00 | 0.00 | 1.00 | FALSE |
116 | GTEx | Skin Sun Exposed Lower leg | MLXIPL | 0.12 | 0.09 | lasso | 4 | 0.06 | 6.1e-06 | 5.1 | 5.2 | 2.0e-07 | 0.01 | 0.00 | 0.99 | FALSE |
117 | GTEx | Skin Sun Exposed Lower leg | PMS2P3 | 0.38 | 0.30 | lasso | 3 | 0.29 | 1.9e-24 | -11.6 | -11.7 | 1.6e-31 | 1.00 | 0.00 | 1.00 | FALSE |
118 | GTEx | Skin Sun Exposed Lower leg | TMEM60 | 0.10 | 0.10 | lasso | 3 | 0.09 | 1.4e-07 | -5.4 | -5.4 | 8.1e-08 | 0.03 | 0.89 | 0.11 | FALSE |
119 | GTEx | Skin Sun Exposed Lower leg | POM121C | 0.11 | 0.04 | enet | 21 | 0.08 | 6.1e-07 | 4.4 | -5.5 | 5.2e-08 | 0.65 | 0.01 | 0.94 | FALSE |
120 | GTEx | Skin Sun Exposed Lower leg | STAG3L2 | 0.15 | 0.05 | enet | 8 | 0.08 | 2.8e-07 | 6.6 | -7.5 | 7.1e-14 | 0.24 | 0.10 | 0.77 | FALSE |
121 | GTEx | Skin Sun Exposed Lower leg | TRIM73 | 0.13 | 0.08 | enet | 10 | 0.14 | 1.6e-11 | -10.7 | -8.6 | 8.3e-18 | 0.85 | 0.01 | 0.99 | FALSE |
122 | GTEx | Skin Sun Exposed Lower leg | DTX2P1 | 0.16 | 0.03 | enet | 22 | 0.05 | 4.8e-05 | 9.7 | 6.5 | 8.6e-11 | -0.02 | 0.00 | 0.99 | FALSE |
123 | GTEx | Skin Sun Exposed Lower leg | STAG3L1 | 0.27 | 0.15 | lasso | 5 | 0.15 | 1.3e-12 | -11.6 | -11.7 | 9.4e-32 | 0.98 | 0.00 | 1.00 | FALSE |
124 | GTEx | Stomach | PMS2P3 | 0.16 | 0.07 | lasso | 5 | 0.09 | 3.7e-05 | -10.7 | -11.1 | 1.8e-28 | 0.91 | 0.00 | 0.99 | FALSE |
125 | GTEx | Stomach | TRIM73 | 0.23 | 0.09 | lasso | 5 | 0.09 | 3.2e-05 | -11.6 | -11.0 | 5.8e-28 | 0.96 | 0.00 | 0.99 | FALSE |
126 | GTEx | Stomach | STAG3L1 | 0.35 | 0.20 | lasso | 5 | 0.18 | 4.2e-09 | -10.7 | -10.9 | 1.3e-27 | 0.86 | 0.01 | 0.99 | FALSE |
127 | GTEx | Testis | STAG3L2 | 0.26 | 0.13 | lasso | 4 | 0.22 | 4.0e-10 | 4.7 | -6.4 | 1.8e-10 | 0.07 | 0.24 | 0.75 | FALSE |
128 | GTEx | Testis | TRIM73 | 0.20 | 0.21 | lasso | 2 | 0.19 | 6.2e-09 | -11.6 | -11.5 | 1.9e-30 | 1.00 | 0.00 | 1.00 | FALSE |
129 | GTEx | Testis | STAG3L1 | 0.24 | 0.24 | enet | 14 | 0.27 | 1.4e-12 | -11.6 | -11.1 | 2.2e-28 | 0.88 | 0.00 | 1.00 | FALSE |
130 | GTEx | Testis | NSUN5P1 | 0.17 | 0.02 | enet | 10 | 0.05 | 4.2e-03 | 3.4 | -6.3 | 2.2e-10 | 0.69 | 0.01 | 0.76 | FALSE |
131 | GTEx | Thyroid | POM121C | 0.14 | 0.08 | lasso | 3 | 0.07 | 3.4e-06 | -11.6 | -11.1 | 1.8e-28 | 0.96 | 0.00 | 1.00 | FALSE |
132 | GTEx | Thyroid | STAG3L2 | 0.26 | 0.13 | enet | 20 | 0.16 | 1.4e-12 | 6.6 | -6.5 | 8.5e-11 | 0.24 | 0.13 | 0.87 | FALSE |
133 | GTEx | Thyroid | GTF2IRD2B | 0.03 | 0.04 | lasso | 1 | 0.03 | 1.9e-03 | 7.0 | 7.0 | 2.4e-12 | -0.17 | 0.01 | 0.88 | FALSE |
134 | GTEx | Thyroid | TRIM73 | 0.21 | 0.17 | lasso | 4 | 0.18 | 1.6e-13 | -11.6 | -10.5 | 9.0e-26 | 0.97 | 0.00 | 1.00 | FALSE |
135 | GTEx | Thyroid | GSAP | 0.19 | 0.08 | lasso | 3 | 0.07 | 3.3e-06 | 6.3 | -6.3 | 2.7e-10 | -0.03 | 0.90 | 0.00 | FALSE |
136 | GTEx | Thyroid | GTF2IRD2 | 0.08 | 0.07 | lasso | 1 | 0.04 | 2.4e-04 | 6.6 | 6.6 | 5.1e-11 | -0.12 | 0.08 | 0.51 | FALSE |
137 | GTEx | Thyroid | AC007000.12 | 0.13 | 0.08 | enet | 24 | 0.07 | 2.6e-06 | -4.6 | -5.3 | 1.4e-07 | 0.03 | 0.66 | 0.02 | FALSE |
138 | GTEx | Thyroid | STAG3L1 | 0.36 | 0.24 | enet | 17 | 0.27 | 8.0e-21 | -11.6 | -10.8 | 4.4e-27 | 0.92 | 0.00 | 1.00 | FALSE |
139 | GTEx | Whole Blood | TMEM60 | 0.05 | 0.04 | enet | 7 | 0.03 | 5.4e-04 | -5.2 | -5.2 | 2.4e-07 | 0.03 | 0.91 | 0.06 | FALSE |
140 | GTEx | Whole Blood | STAG3L1 | 0.08 | 0.06 | lasso | 3 | 0.07 | 2.8e-07 | -11.6 | -11.6 | 2.7e-31 | 1.00 | 0.00 | 1.00 | FALSE |
141 | METSIM | Adipose | NCF1 | 0.05 | 0.03 | blup | 130 | 0.04 | 3.9e-07 | 6.7 | 8.1 | 7.6e-16 | -0.22 | 0.03 | 0.97 | FALSE |
142 | METSIM | Adipose | POM121C | 0.11 | 0.08 | lasso | 1 | 0.08 | 1.6e-11 | -11.6 | -11.6 | 5.9e-31 | 1.00 | 0.00 | 1.00 | FALSE |
143 | METSIM | Adipose | TMEM60 | 0.10 | 0.07 | enet | 9 | 0.08 | 2.1e-12 | 5.4 | -5.5 | 4.5e-08 | 0.00 | 0.80 | 0.20 | FALSE |
144 | METSIM | Adipose | TRIM73 | 0.11 | 0.11 | lasso | 5 | 0.12 | 8.6e-18 | -10.7 | -10.4 | 3.2e-25 | 0.95 | 0.01 | 0.99 | FALSE |
145 | ROSMAP | Brain Pre-frontal Cortex | PMS2P3 | 0.05 | 0.04 | lasso | 1 | 0.03 | 4.6e-05 | -11.6 | -11.6 | 5.9e-31 | 1.00 | 0.00 | 1.00 | FALSE |
146 | ROSMAP | Brain Pre-frontal Cortex | POM121C | 0.36 | 0.26 | lasso | 7 | 0.27 | 2.8e-34 | -11.6 | -11.6 | 5.3e-31 | 0.99 | 0.00 | 1.00 | FALSE |
147 | ROSMAP | Brain Pre-frontal Cortex | PMS2P2 | 0.17 | 0.08 | enet | 8 | 0.08 | 6.0e-10 | -11.6 | -11.0 | 2.3e-28 | 0.90 | 0.00 | 1.00 | FALSE |
148 | ROSMAP | Brain Pre-frontal Cortex | WBSCR16 | 0.04 | 0.03 | lasso | 2 | 0.03 | 4.8e-05 | 6.4 | 6.2 | 6.6e-10 | -0.14 | 0.00 | 0.99 | FALSE |
149 | ROSMAP | Brain Pre-frontal Cortex | GSAP | 0.36 | 0.27 | lasso | 7 | 0.28 | 1.5e-35 | 6.2 | -6.2 | 4.1e-10 | -0.04 | 1.00 | 0.00 | FALSE |
150 | ROSMAP | Brain Pre-frontal Cortex | RSBN1L | 0.09 | 0.07 | enet | 42 | 0.08 | 9.9e-11 | -4.7 | -7.3 | 3.0e-13 | 0.04 | 0.96 | 0.04 | TRUE |
151 | ROSMAP | Brain Pre-frontal Cortex | STAG3L1 | 0.46 | 0.32 | lasso | 4 | 0.32 | 2.2e-42 | -11.6 | -11.6 | 4.6e-31 | 1.00 | 0.00 | 1.00 | FALSE |
152 | ROSMAP | Brain Pre-frontal Cortex | GTF2IP1 | 0.09 | 0.06 | lasso | 3 | 0.05 | 1.7e-07 | -11.6 | -11.6 | 6.5e-31 | 1.00 | 0.00 | 1.00 | FALSE |
153 | The Cancer Genome Atlas | Breast Invasive Carcinoma | POM121C | 0.04 | 0.04 | lasso | 2 | 0.03 | 1.2e-07 | -11.6 | -11.5 | 1.3e-30 | 1.00 | 0.00 | 1.00 | FALSE |
154 | The Cancer Genome Atlas | Breast Invasive Carcinoma | TMEM60 | 0.02 | 0.02 | lasso | 1 | 0.02 | 2.3e-05 | 5.6 | -5.6 | 2.7e-08 | 0.02 | 0.01 | 0.99 | FALSE |
155 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | POM121C | 0.16 | 0.12 | lasso | 2 | 0.11 | 4.8e-06 | -11.6 | -11.9 | 9.4e-33 | 0.99 | 0.00 | 1.00 | FALSE |
156 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | PMS2L11 | 0.05 | 0.02 | enet | 3 | 0.06 | 2.5e-07 | -1.0 | 7.2 | 4.7e-13 | -0.01 | 0.01 | 0.97 | FALSE |
157 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | POM121C | 0.03 | 0.02 | lasso | 2 | 0.02 | 4.8e-03 | -11.6 | -12.0 | 3.8e-33 | 0.97 | 0.00 | 0.86 | FALSE |
158 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PMS2L11 | 0.06 | 0.07 | blup | 6 | 0.08 | 4.3e-09 | -2.5 | 7.1 | 1.4e-12 | -0.04 | 0.46 | 0.53 | FALSE |
159 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | PMS2L11 | 0.05 | 0.01 | blup | 6 | 0.03 | 1.1e-02 | -2.5 | 7.6 | 2.9e-14 | -0.03 | 0.00 | 0.67 | FALSE |
160 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PION | 0.08 | 0.05 | lasso | 3 | 0.05 | 8.5e-07 | 6.3 | -5.9 | 2.9e-09 | 0.01 | 0.00 | 1.00 | TRUE |
161 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PMS2L11 | 0.02 | 0.01 | blup | 6 | 0.02 | 9.7e-04 | -2.5 | 7.5 | 9.5e-14 | -0.03 | 0.00 | 0.70 | FALSE |
162 | The Cancer Genome Atlas | Brain Lower Grade Glioma | RSBN1L | 0.02 | 0.02 | blup | 58 | 0.02 | 3.4e-03 | -5.4 | 5.5 | 3.0e-08 | -0.03 | 0.02 | 0.83 | FALSE |
163 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | TMEM60 | 0.02 | 0.03 | blup | 29 | 0.02 | 6.8e-03 | 5.6 | -5.4 | 5.6e-08 | 0.03 | 0.01 | 0.87 | FALSE |
164 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | POM121C | 0.07 | 0.02 | enet | 3 | 0.04 | 5.8e-03 | -11.6 | -8.5 | 1.6e-17 | 0.85 | 0.00 | 0.67 | TRUE |
165 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PION | 0.13 | 0.07 | enet | 9 | 0.08 | 3.4e-09 | 6.3 | -5.7 | 1.3e-08 | -0.01 | 0.00 | 1.00 | FALSE |
166 | The Cancer Genome Atlas | Prostate Adenocarcinoma | POM121C | 0.08 | 0.05 | lasso | 2 | 0.05 | 6.0e-06 | -11.6 | -11.2 | 3.9e-29 | 1.00 | 0.00 | 1.00 | FALSE |
167 | The Cancer Genome Atlas | Thyroid Carcinoma | POM121C | 0.08 | 0.07 | lasso | 3 | 0.07 | 3.6e-07 | -11.6 | -11.4 | 2.5e-30 | 0.99 | 0.00 | 1.00 | FALSE |
168 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | PMS2L3 | 0.23 | 0.14 | lasso | 2 | 0.14 | 1.3e-04 | -11.6 | -12.1 | 1.4e-33 | 0.98 | 0.00 | 0.92 | TRUE |