Best TWAS P=5.24e-59 · Best GWAS P=9.37e-61 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | C2orf16 | 0.03 | 0.00 | lasso | 5 | 0.02 | 3.3e-03 | -5.57 | 7.6 | 3.3e-14 | 0.41 | 0.11 | 0.36 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | GTF3C2 | 0.06 | 0.09 | lasso | 8 | 0.08 | 7.2e-10 | -10.62 | 12.6 | 3.2e-36 | 0.72 | 0.28 | 0.72 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | IFT172 | 0.06 | 0.09 | enet | 16 | 0.09 | 3.9e-11 | -9.92 | -12.3 | 1.4e-34 | -0.75 | 0.48 | 0.52 | FALSE |
4 | CommonMind | Brain Pre-frontal Cortex | PPM1G | 0.03 | 0.01 | bslmm | 305 | 0.00 | 8.7e-02 | -10.24 | -10.2 | 1.2e-24 | -0.50 | 0.60 | 0.06 | FALSE |
5 | GTEx | Adipose Subcutaneous | NRBP1 | 0.07 | 0.04 | lasso | 5 | 0.05 | 6.9e-05 | -9.96 | 9.2 | 3.7e-20 | 0.53 | 0.72 | 0.23 | FALSE |
6 | GTEx | Adipose Subcutaneous | PPM1G | 0.04 | 0.05 | lasso | 2 | 0.04 | 4.9e-04 | -10.11 | 9.9 | 3.6e-23 | 0.59 | 0.59 | 0.04 | FALSE |
7 | GTEx | Adipose Subcutaneous | ATRAID | 0.08 | 0.11 | lasso | 1 | 0.09 | 1.0e-07 | -6.84 | -6.8 | 7.9e-12 | -0.38 | 1.00 | 0.00 | FALSE |
8 | GTEx | Adipose Subcutaneous | AC074117.10 | 0.06 | 0.04 | lasso | 5 | 0.02 | 4.8e-03 | -11.60 | 11.5 | 1.2e-30 | 0.65 | 0.45 | 0.27 | FALSE |
9 | GTEx | Adipose Visceral Omentum | NRBP1 | 0.05 | 0.05 | lasso | 4 | 0.04 | 2.5e-03 | -10.11 | 10.3 | 5.3e-25 | 0.61 | 0.34 | 0.07 | FALSE |
10 | GTEx | Adipose Visceral Omentum | PPM1G | 0.06 | 0.01 | lasso | 5 | 0.01 | 1.1e-01 | -10.11 | 11.0 | 5.8e-28 | 0.64 | 0.11 | 0.28 | FALSE |
11 | GTEx | Adipose Visceral Omentum | ATRAID | 0.12 | 0.08 | lasso | 2 | 0.04 | 2.3e-03 | -7.49 | -7.6 | 3.1e-14 | -0.36 | 0.16 | 0.08 | FALSE |
12 | GTEx | Adipose Visceral Omentum | KRTCAP3 | 0.10 | 0.07 | lasso | 4 | 0.06 | 5.2e-04 | -10.62 | -10.6 | 2.7e-26 | -0.61 | 0.68 | 0.10 | FALSE |
13 | GTEx | Adipose Visceral Omentum | AC074117.10 | 0.14 | 0.09 | lasso | 3 | 0.08 | 5.0e-05 | -10.45 | 10.6 | 4.8e-26 | 0.60 | 0.85 | 0.08 | FALSE |
14 | GTEx | Adrenal Gland | KRTCAP3 | 0.11 | 0.16 | lasso | 4 | 0.15 | 4.9e-06 | -10.23 | -10.1 | 5.5e-24 | -0.60 | 0.54 | 0.38 | FALSE |
15 | GTEx | Artery Aorta | NRBP1 | 0.06 | 0.07 | enet | 8 | 0.06 | 2.6e-04 | -11.45 | 9.0 | 1.9e-19 | 0.51 | 0.50 | 0.05 | TRUE |
16 | GTEx | Artery Aorta | ATRAID | 0.31 | 0.15 | lasso | 13 | 0.11 | 9.2e-07 | -7.41 | -7.6 | 3.9e-14 | -0.37 | 0.99 | 0.00 | FALSE |
17 | GTEx | Artery Aorta | AC074117.10 | 0.06 | 0.04 | lasso | 3 | 0.03 | 6.8e-03 | -10.45 | 10.4 | 1.7e-25 | 0.58 | 0.24 | 0.14 | FALSE |
18 | GTEx | Artery Aorta | RP11-373D23.3 | 0.23 | 0.12 | enet | 12 | 0.06 | 2.5e-04 | -6.41 | 6.0 | 1.5e-09 | 0.06 | 0.07 | 0.90 | TRUE |
19 | GTEx | Artery Coronary | NRBP1 | 0.09 | 0.01 | enet | 14 | 0.03 | 4.4e-02 | -5.49 | 8.3 | 1.2e-16 | 0.46 | 0.18 | 0.27 | FALSE |
20 | GTEx | Artery Coronary | AC074117.10 | 0.13 | 0.17 | enet | 9 | 0.12 | 5.4e-05 | -6.91 | 7.4 | 1.3e-13 | 0.47 | 0.11 | 0.72 | FALSE |
21 | GTEx | Artery Tibial | NRBP1 | 0.07 | 0.03 | lasso | 11 | 0.05 | 1.3e-04 | -10.09 | 9.1 | 6.2e-20 | 0.50 | 0.54 | 0.19 | FALSE |
22 | GTEx | Artery Tibial | SNX17 | 0.11 | 0.07 | enet | 31 | 0.04 | 3.3e-04 | -10.09 | 7.3 | 2.5e-13 | 0.38 | 0.96 | 0.01 | FALSE |
23 | GTEx | Artery Tibial | PPM1G | 0.06 | 0.02 | lasso | 4 | 0.03 | 2.3e-03 | -10.56 | 11.6 | 5.4e-31 | 0.66 | 0.29 | 0.12 | FALSE |
24 | GTEx | Artery Tibial | ATRAID | 0.19 | 0.13 | lasso | 5 | 0.12 | 2.3e-09 | -6.84 | -7.0 | 3.1e-12 | -0.38 | 1.00 | 0.00 | FALSE |
25 | GTEx | Artery Tibial | AC074117.10 | 0.13 | 0.14 | lasso | 5 | 0.13 | 1.1e-10 | -10.45 | 11.1 | 1.3e-28 | 0.62 | 0.99 | 0.00 | FALSE |
26 | GTEx | Brain Cerebellum | ATRAID | 0.23 | 0.19 | lasso | 9 | 0.14 | 4.9e-05 | -5.43 | -5.6 | 2.6e-08 | -0.28 | 0.23 | 0.20 | FALSE |
27 | GTEx | Brain Cerebellum | AC074117.10 | 0.13 | 0.08 | enet | 6 | 0.07 | 4.4e-03 | -10.66 | -10.7 | 1.7e-26 | -0.60 | 0.09 | 0.48 | FALSE |
28 | GTEx | Brain Cortex | KRTCAP3 | 0.19 | 0.10 | lasso | 2 | 0.12 | 3.7e-04 | -9.38 | -9.2 | 3.4e-20 | -0.54 | 0.24 | 0.35 | FALSE |
29 | GTEx | Brain Nucleus accumbens basal ganglia | OST4 | 0.23 | 0.06 | lasso | 4 | 0.08 | 3.1e-03 | -5.44 | -6.2 | 8.0e-10 | -0.34 | 0.06 | 0.12 | FALSE |
30 | GTEx | Breast Mammary Tissue (Female) | FNDC4 | 0.05 | 0.01 | lasso | 1 | 0.00 | 3.3e-01 | -7.49 | 7.5 | 6.8e-14 | 0.36 | 0.04 | 0.06 | FALSE |
31 | GTEx | Breast Mammary Tissue (Female) | ABHD1 | 0.17 | 0.01 | enet | 28 | 0.07 | 5.3e-03 | -1.15 | -8.0 | 1.8e-15 | -0.52 | 0.02 | 0.76 | FALSE |
32 | GTEx | Cells EBV-transformed lymphocytes | NRBP1 | 0.11 | 0.13 | enet | 13 | 0.15 | 1.2e-05 | -10.23 | 10.8 | 4.5e-27 | 0.62 | 0.57 | 0.10 | FALSE |
33 | GTEx | Cells Transformed fibroblasts | NRBP1 | 0.09 | 0.08 | lasso | 3 | 0.08 | 7.8e-07 | -10.45 | 10.7 | 1.3e-26 | 0.61 | 0.95 | 0.04 | FALSE |
34 | GTEx | Cells Transformed fibroblasts | PPM1G | 0.06 | 0.00 | lasso | 4 | 0.01 | 3.2e-02 | -10.01 | 5.9 | 3.4e-09 | 0.33 | 0.26 | 0.04 | FALSE |
35 | GTEx | Cells Transformed fibroblasts | IFT172 | 0.04 | 0.04 | lasso | 2 | 0.02 | 8.1e-03 | -9.63 | -9.8 | 7.4e-23 | -0.60 | 0.20 | 0.25 | FALSE |
36 | GTEx | Cells Transformed fibroblasts | CGREF1 | 0.10 | 0.11 | lasso | 8 | 0.12 | 6.4e-09 | 5.14 | 5.2 | 2.4e-07 | 0.00 | 1.00 | 0.00 | FALSE |
37 | GTEx | Cells Transformed fibroblasts | ATRAID | 0.26 | 0.18 | enet | 17 | 0.19 | 5.5e-14 | -5.41 | -6.3 | 2.2e-10 | -0.31 | 1.00 | 0.00 | FALSE |
38 | GTEx | Cells Transformed fibroblasts | AC074117.10 | 0.21 | 0.19 | enet | 23 | 0.18 | 1.6e-13 | -11.60 | 11.8 | 4.2e-32 | 0.66 | 0.87 | 0.13 | FALSE |
39 | GTEx | Colon Sigmoid | AC074117.10 | 0.13 | 0.18 | lasso | 3 | 0.14 | 1.1e-05 | -10.45 | 10.6 | 3.6e-26 | 0.60 | 0.85 | 0.08 | FALSE |
40 | GTEx | Colon Transverse | NRBP1 | 0.08 | 0.03 | enet | 14 | 0.00 | 2.0e-01 | -11.45 | 10.5 | 7.7e-26 | 0.59 | 0.16 | 0.14 | FALSE |
41 | GTEx | Colon Transverse | KHK | 0.14 | 0.07 | enet | 20 | 0.11 | 8.1e-06 | 4.58 | 5.3 | 8.9e-08 | 0.03 | 0.94 | 0.00 | FALSE |
42 | GTEx | Colon Transverse | AC074117.10 | 0.13 | 0.13 | enet | 16 | 0.14 | 2.3e-07 | -10.62 | 9.8 | 1.5e-22 | 0.51 | 0.94 | 0.04 | FALSE |
43 | GTEx | Esophagus Gastroesophageal Junction | NRBP1 | 0.11 | 0.01 | enet | 23 | 0.02 | 7.7e-02 | -7.92 | 11.8 | 6.6e-32 | 0.53 | 0.12 | 0.24 | FALSE |
44 | GTEx | Esophagus Gastroesophageal Junction | AC074117.10 | 0.12 | 0.13 | enet | 9 | 0.09 | 4.9e-04 | -10.43 | 11.2 | 2.6e-29 | 0.64 | 0.43 | 0.30 | FALSE |
45 | GTEx | Esophagus Gastroesophageal Junction | RP11-373D23.3 | 0.17 | 0.01 | enet | 15 | 0.04 | 1.2e-02 | -6.20 | 6.5 | 8.5e-11 | 0.28 | 0.06 | 0.34 | FALSE |
46 | GTEx | Esophagus Mucosa | NRBP1 | 0.13 | 0.06 | enet | 13 | 0.06 | 4.1e-05 | -11.60 | 8.8 | 1.4e-18 | 0.50 | 0.68 | 0.23 | FALSE |
47 | GTEx | Esophagus Mucosa | ATRAID | 0.28 | 0.17 | lasso | 5 | 0.16 | 4.3e-11 | -5.43 | -5.2 | 2.1e-07 | -0.27 | 1.00 | 0.00 | FALSE |
48 | GTEx | Esophagus Mucosa | AC074117.10 | 0.12 | 0.14 | lasso | 8 | 0.14 | 2.1e-09 | -11.60 | 12.6 | 1.9e-36 | 0.74 | 0.94 | 0.06 | FALSE |
49 | GTEx | Esophagus Muscularis | NRBP1 | 0.07 | 0.04 | lasso | 6 | 0.04 | 1.3e-03 | -11.60 | 14.5 | 7.0e-48 | 0.82 | 0.01 | 0.97 | FALSE |
50 | GTEx | Esophagus Muscularis | PPM1G | 0.06 | 0.10 | lasso | 2 | 0.07 | 3.7e-05 | -10.21 | 10.0 | 2.2e-23 | 0.57 | 0.34 | 0.57 | FALSE |
51 | GTEx | Esophagus Muscularis | ATRAID | 0.14 | 0.08 | lasso | 2 | 0.05 | 6.7e-04 | -5.41 | -6.6 | 5.2e-11 | -0.34 | 0.96 | 0.00 | FALSE |
52 | GTEx | Esophagus Muscularis | AC074117.10 | 0.17 | 0.14 | enet | 5 | 0.09 | 6.6e-06 | -11.60 | 11.4 | 3.5e-30 | 0.65 | 0.73 | 0.26 | FALSE |
53 | GTEx | Heart Atrial Appendage | KHK | 0.12 | 0.08 | lasso | 2 | 0.10 | 2.8e-05 | 5.14 | 5.2 | 2.3e-07 | 0.03 | 0.52 | 0.02 | FALSE |
54 | GTEx | Heart Left Ventricle | ATRAID | 0.29 | 0.11 | lasso | 5 | 0.17 | 3.6e-09 | -7.49 | -6.0 | 2.3e-09 | -0.33 | 0.98 | 0.00 | FALSE |
55 | GTEx | Lung | NRBP1 | 0.05 | 0.05 | enet | 9 | 0.05 | 1.7e-04 | -10.56 | 11.0 | 4.8e-28 | 0.61 | 0.75 | 0.16 | FALSE |
56 | GTEx | Lung | AC074117.10 | 0.07 | 0.06 | lasso | 6 | 0.05 | 6.6e-05 | -10.56 | 10.9 | 1.6e-27 | 0.63 | 0.75 | 0.25 | FALSE |
57 | GTEx | Lung | RP11-373D23.3 | 0.08 | 0.00 | enet | 21 | 0.02 | 2.3e-02 | -5.55 | 7.2 | 4.3e-13 | 0.23 | 0.08 | 0.66 | FALSE |
58 | GTEx | Muscle Skeletal | SNX17 | 0.18 | 0.24 | lasso | 6 | 0.26 | 6.2e-26 | -10.29 | 10.5 | 8.1e-26 | 0.61 | 1.00 | 0.00 | FALSE |
59 | GTEx | Muscle Skeletal | KRTCAP3 | 0.08 | 0.06 | lasso | 4 | 0.04 | 3.1e-05 | -10.21 | -10.2 | 1.3e-24 | -0.59 | 1.00 | 0.00 | FALSE |
60 | GTEx | Muscle Skeletal | GPN1 | 0.06 | 0.02 | enet | 9 | 0.02 | 2.9e-03 | 5.52 | 8.4 | 6.5e-17 | 0.43 | 0.29 | 0.07 | FALSE |
61 | GTEx | Nerve Tibial | NRBP1 | 0.06 | 0.00 | enet | 9 | 0.02 | 2.0e-02 | -11.60 | 11.2 | 4.6e-29 | 0.61 | 0.28 | 0.61 | FALSE |
62 | GTEx | Nerve Tibial | SNX17 | 0.04 | 0.01 | enet | 20 | 0.00 | 4.0e-01 | -10.43 | 8.1 | 4.4e-16 | 0.37 | 0.09 | 0.07 | TRUE |
63 | GTEx | Nerve Tibial | PPM1G | 0.09 | 0.06 | lasso | 4 | 0.05 | 1.2e-04 | -10.18 | 10.1 | 6.5e-24 | 0.57 | 0.41 | 0.40 | FALSE |
64 | GTEx | Nerve Tibial | KHK | 0.24 | 0.19 | lasso | 7 | 0.20 | 2.2e-14 | 4.52 | 6.2 | 4.3e-10 | 0.04 | 1.00 | 0.00 | FALSE |
65 | GTEx | Nerve Tibial | SLC5A6 | 0.16 | 0.16 | lasso | 8 | 0.16 | 4.3e-11 | -6.84 | 7.0 | 3.1e-12 | 0.38 | 1.00 | 0.00 | FALSE |
66 | GTEx | Nerve Tibial | ATRAID | 0.12 | 0.05 | lasso | 4 | 0.04 | 1.0e-03 | -5.41 | -5.6 | 1.8e-08 | -0.30 | 0.57 | 0.22 | FALSE |
67 | GTEx | Nerve Tibial | AC074117.10 | 0.04 | 0.05 | lasso | 2 | 0.04 | 7.7e-04 | -9.74 | 9.1 | 9.7e-20 | 0.50 | 0.16 | 0.50 | FALSE |
68 | GTEx | Ovary | AC074117.10 | 0.16 | 0.04 | enet | 9 | 0.05 | 2.0e-02 | -10.11 | 12.9 | 2.6e-38 | 0.77 | 0.04 | 0.80 | FALSE |
69 | GTEx | Pancreas | CAD | 0.22 | 0.23 | lasso | 4 | 0.21 | 2.4e-09 | -5.46 | -5.3 | 1.4e-07 | -0.27 | 1.00 | 0.00 | FALSE |
70 | GTEx | Pituitary | AC074117.10 | 0.23 | 0.23 | lasso | 8 | 0.29 | 5.6e-08 | -10.18 | 11.6 | 6.6e-31 | 0.66 | 0.34 | 0.57 | FALSE |
71 | GTEx | Prostate | AC074117.10 | 0.14 | 0.01 | lasso | 5 | 0.02 | 8.8e-02 | -11.60 | 10.7 | 8.1e-27 | 0.61 | 0.06 | 0.59 | FALSE |
72 | GTEx | Skin Not Sun Exposed Suprapubic | NRBP1 | 0.19 | 0.15 | lasso | 7 | 0.16 | 6.0e-09 | -10.56 | 10.1 | 5.8e-24 | 0.58 | 1.00 | 0.00 | FALSE |
73 | GTEx | Skin Not Sun Exposed Suprapubic | ATRAID | 0.17 | 0.03 | lasso | 2 | 0.02 | 2.5e-02 | -5.43 | -6.6 | 4.5e-11 | -0.34 | 0.17 | 0.05 | FALSE |
74 | GTEx | Skin Sun Exposed Lower leg | NRBP1 | 0.10 | 0.08 | lasso | 6 | 0.08 | 3.6e-07 | -10.43 | 10.5 | 1.3e-25 | 0.58 | 1.00 | 0.00 | FALSE |
75 | GTEx | Skin Sun Exposed Lower leg | CGREF1 | 0.07 | 0.00 | lasso | 7 | 0.01 | 7.1e-02 | 3.88 | 7.0 | 2.6e-12 | 0.18 | 0.21 | 0.03 | TRUE |
76 | GTEx | Skin Sun Exposed Lower leg | ATRAID | 0.14 | 0.07 | enet | 15 | 0.09 | 1.3e-07 | -5.43 | -5.8 | 5.2e-09 | -0.39 | 0.96 | 0.04 | FALSE |
77 | GTEx | Skin Sun Exposed Lower leg | SLC4A1AP | 0.04 | 0.01 | lasso | 3 | 0.02 | 1.7e-02 | -10.24 | -10.3 | 4.7e-25 | -0.60 | 0.21 | 0.11 | FALSE |
78 | GTEx | Spleen | FNDC4 | 0.41 | 0.27 | lasso | 7 | 0.24 | 1.0e-06 | 5.62 | -6.3 | 3.6e-10 | -0.33 | 0.95 | 0.01 | FALSE |
79 | GTEx | Spleen | KRTCAP3 | 0.38 | 0.01 | enet | 25 | 0.12 | 5.4e-04 | -4.45 | -5.4 | 5.7e-08 | -0.37 | 0.10 | 0.39 | FALSE |
80 | GTEx | Stomach | ATRAID | 0.13 | 0.10 | lasso | 4 | 0.09 | 3.5e-05 | -6.84 | -6.8 | 7.6e-12 | -0.38 | 0.76 | 0.02 | FALSE |
81 | GTEx | Stomach | AC074117.10 | 0.06 | 0.01 | lasso | 7 | 0.01 | 7.8e-02 | -11.60 | -5.3 | 1.2e-07 | -0.36 | 0.20 | 0.08 | TRUE |
82 | GTEx | Testis | NRBP1 | 0.16 | 0.09 | lasso | 3 | 0.06 | 1.8e-03 | -11.60 | 13.5 | 1.8e-41 | 0.80 | 0.03 | 0.96 | FALSE |
83 | GTEx | Testis | AC074117.10 | 0.14 | 0.08 | lasso | 6 | 0.12 | 4.5e-06 | -10.36 | 14.0 | 1.3e-44 | 0.85 | 0.05 | 0.94 | TRUE |
84 | GTEx | Testis | RP11-195B17.1 | 0.13 | 0.00 | lasso | 4 | 0.02 | 4.5e-02 | -10.56 | 10.2 | 2.2e-24 | 0.58 | 0.04 | 0.15 | FALSE |
85 | GTEx | Thyroid | NRBP1 | 0.08 | 0.07 | enet | 29 | 0.04 | 3.7e-04 | -9.38 | 7.5 | 6.8e-14 | 0.38 | 0.81 | 0.02 | FALSE |
86 | GTEx | Thyroid | FNDC4 | 0.24 | 0.10 | enet | 23 | 0.16 | 2.2e-12 | -4.82 | -9.9 | 4.2e-23 | -0.69 | 0.67 | 0.33 | FALSE |
87 | GTEx | Thyroid | PPM1G | 0.06 | 0.06 | lasso | 3 | 0.06 | 2.2e-05 | -10.11 | 10.3 | 8.8e-25 | 0.60 | 0.92 | 0.01 | FALSE |
88 | GTEx | Thyroid | ATRAID | 0.14 | 0.12 | lasso | 6 | 0.10 | 6.1e-08 | -7.49 | -7.6 | 2.5e-14 | -0.36 | 1.00 | 0.00 | FALSE |
89 | GTEx | Thyroid | AC074117.10 | 0.17 | 0.14 | lasso | 4 | 0.15 | 2.7e-11 | -10.43 | 10.7 | 9.5e-27 | 0.61 | 1.00 | 0.00 | FALSE |
90 | GTEx | Thyroid | AC109828.1 | 0.12 | 0.02 | enet | 24 | 0.04 | 4.3e-04 | -9.74 | 8.9 | 3.6e-19 | 0.52 | 0.48 | 0.21 | FALSE |
91 | GTEx | Thyroid | RP11-373D23.3 | 0.16 | 0.07 | enet | 19 | 0.04 | 2.6e-04 | -6.24 | 6.0 | 2.4e-09 | 0.15 | 0.10 | 0.83 | FALSE |
92 | GTEx | Vagina | AC074117.10 | 0.14 | 0.04 | enet | 13 | 0.06 | 1.4e-02 | -9.38 | 12.2 | 3.7e-34 | 0.72 | 0.08 | 0.57 | FALSE |
93 | GTEx | Whole Blood | NRBP1 | 0.06 | 0.00 | enet | 11 | 0.00 | 2.3e-01 | -5.43 | 6.0 | 1.6e-09 | 0.25 | 0.07 | 0.07 | TRUE |
94 | GTEx | Whole Blood | KRTCAP3 | 0.12 | 0.05 | enet | 10 | 0.05 | 9.9e-06 | -9.96 | -9.9 | 4.6e-23 | -0.63 | 0.97 | 0.01 | FALSE |
95 | METSIM | Adipose | ATRAID | 0.11 | 0.09 | bslmm | 297 | 0.10 | 1.4e-14 | -6.84 | -9.5 | 3.2e-21 | -0.47 | 1.00 | 0.00 | FALSE |
96 | METSIM | Adipose | BRE | 0.03 | 0.00 | blup | 534 | 0.00 | 1.3e-01 | 0.96 | 5.8 | 7.1e-09 | 0.30 | 0.10 | 0.05 | FALSE |
97 | METSIM | Adipose | KRTCAP3 | 0.05 | 0.01 | blup | 288 | 0.03 | 1.6e-05 | -9.96 | -10.7 | 1.0e-26 | -0.52 | 0.96 | 0.03 | FALSE |
98 | METSIM | Adipose | NRBP1 | 0.06 | 0.09 | lasso | 3 | 0.08 | 1.6e-12 | -11.60 | 11.7 | 1.3e-31 | 0.67 | 1.00 | 0.00 | FALSE |
99 | METSIM | Adipose | PREB | 0.04 | 0.01 | bslmm | 302 | 0.02 | 5.6e-04 | -4.27 | -6.7 | 2.7e-11 | -0.36 | 0.07 | 0.30 | FALSE |
100 | METSIM | Adipose | SLC5A6 | 0.03 | 0.02 | bslmm | 298 | 0.01 | 3.9e-03 | -7.49 | 7.8 | 6.8e-15 | 0.43 | 0.25 | 0.04 | FALSE |
101 | NTR | Blood | C2orf28 | 0.02 | 0.01 | bslmm | 301 | 0.01 | 1.9e-04 | -5.41 | -7.1 | 1.2e-12 | -0.29 | 0.11 | 0.02 | FALSE |
102 | NTR | Blood | CGREF1 | 0.01 | 0.00 | blup | 307 | 0.01 | 5.7e-03 | -2.79 | -7.7 | 1.8e-14 | -0.49 | 0.20 | 0.07 | FALSE |
103 | ROSMAP | Brain Pre-frontal Cortex | SNX17 | 0.27 | 0.35 | lasso | 10 | 0.34 | 7.9e-46 | -10.08 | -10.1 | 3.9e-24 | -0.60 | 1.00 | 0.00 | FALSE |
104 | ROSMAP | Brain Pre-frontal Cortex | PPM1G | 0.02 | 0.02 | lasso | 2 | 0.01 | 5.2e-03 | 5.75 | 5.8 | 9.0e-09 | 0.33 | 0.55 | 0.03 | FALSE |
105 | ROSMAP | Brain Pre-frontal Cortex | IFT172 | 0.07 | 0.02 | blup | 287 | 0.03 | 5.8e-05 | -10.45 | -12.2 | 3.5e-34 | -0.63 | 0.43 | 0.49 | FALSE |
106 | ROSMAP | Brain Pre-frontal Cortex | ATRAID | 0.05 | 0.03 | enet | 9 | 0.04 | 2.3e-05 | -3.43 | -5.3 | 1.1e-07 | -0.23 | 0.86 | 0.06 | FALSE |
107 | ROSMAP | Brain Pre-frontal Cortex | KRTCAP3 | 0.06 | 0.05 | blup | 279 | 0.05 | 3.1e-07 | -10.11 | -10.0 | 1.9e-23 | -0.58 | 0.99 | 0.00 | FALSE |
108 | ROSMAP | Brain Pre-frontal Cortex | ZNF513 | 0.04 | 0.05 | blup | 280 | 0.05 | 1.3e-06 | -10.23 | 9.0 | 2.1e-19 | 0.47 | 1.00 | 0.00 | FALSE |
109 | ROSMAP | Brain Pre-frontal Cortex | FTH1P3 | 0.04 | 0.01 | bslmm | 280 | 0.02 | 2.8e-03 | -11.60 | 11.5 | 9.5e-31 | 0.65 | 0.04 | 0.70 | FALSE |
110 | ROSMAP | Brain Pre-frontal Cortex | SLC35F6 | 0.05 | 0.04 | enet | 11 | 0.04 | 8.0e-06 | 3.94 | -5.3 | 1.1e-07 | -0.07 | 0.97 | 0.00 | FALSE |
111 | YFS | Blood | EIF2B4 | 0.01 | 0.00 | enet | 9 | 0.00 | 8.5e-02 | -6.84 | -8.2 | 3.1e-16 | -0.52 | 0.04 | 0.03 | FALSE |
112 | YFS | Blood | KRTCAP3 | 0.12 | 0.18 | bslmm | 286 | 0.18 | 1.0e-55 | -10.01 | -9.9 | 4.1e-23 | -0.59 | 1.00 | 0.00 | FALSE |
113 | YFS | Blood | NRBP1 | 0.01 | 0.01 | lasso | 6 | 0.01 | 9.1e-06 | -10.36 | 10.5 | 1.3e-25 | 0.61 | 0.99 | 0.00 | FALSE |
114 | YFS | Blood | SLC5A6 | 0.21 | 0.14 | blup | 296 | 0.14 | 4.1e-45 | -7.41 | 6.2 | 4.0e-10 | 0.36 | 1.00 | 0.00 | FALSE |
115 | YFS | Blood | SNX17 | 0.05 | 0.03 | blup | 288 | 0.04 | 1.0e-11 | -10.45 | 8.9 | 4.8e-19 | 0.48 | 1.00 | 0.00 | FALSE |
116 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | C2orf16 | 0.05 | 0.03 | lasso | 2 | 0.03 | 2.2e-03 | 5.60 | 5.6 | 2.1e-08 | 0.29 | 0.06 | 0.03 | FALSE |
117 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | C2orf28 | 0.03 | 0.03 | blup | 47 | 0.02 | 7.7e-03 | -7.43 | -7.6 | 3.7e-14 | -0.36 | 0.01 | 0.64 | FALSE |
118 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | NRBP1 | 0.05 | 0.06 | lasso | 2 | 0.05 | 6.0e-05 | -10.14 | 10.1 | 3.5e-24 | 0.60 | 0.27 | 0.68 | FALSE |
119 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | PPM1G | 0.03 | 0.02 | blup | 31 | 0.02 | 8.8e-03 | -10.66 | 11.4 | 5.4e-30 | 0.66 | 0.02 | 0.75 | FALSE |
120 | The Cancer Genome Atlas | Breast Invasive Carcinoma | C2orf28 | 0.08 | 0.03 | lasso | 3 | 0.05 | 2.4e-11 | -7.43 | -7.3 | 2.6e-13 | -0.33 | 0.04 | 0.96 | FALSE |
121 | The Cancer Genome Atlas | Breast Invasive Carcinoma | EIF2B4 | 0.08 | 0.01 | lasso | 2 | 0.01 | 1.0e-02 | -3.84 | -6.5 | 7.0e-11 | -0.35 | 0.02 | 0.42 | FALSE |
122 | The Cancer Genome Atlas | Breast Invasive Carcinoma | GPN1 | 0.06 | 0.02 | lasso | 6 | 0.02 | 7.2e-05 | 10.77 | 9.8 | 1.4e-22 | 0.54 | 0.01 | 0.96 | FALSE |
123 | The Cancer Genome Atlas | Breast Invasive Carcinoma | KRTCAP3 | 0.01 | 0.00 | blup | 27 | 0.00 | 8.7e-02 | -9.38 | -9.4 | 7.9e-21 | -0.56 | 0.03 | 0.52 | FALSE |
124 | The Cancer Genome Atlas | Breast Invasive Carcinoma | NRBP1 | 0.03 | 0.03 | blup | 29 | 0.03 | 1.2e-06 | -9.74 | 9.6 | 1.4e-21 | 0.57 | 0.28 | 0.72 | FALSE |
125 | The Cancer Genome Atlas | Breast Invasive Carcinoma | PREB | 0.04 | 0.02 | enet | 9 | 0.03 | 4.1e-06 | 2.03 | -5.2 | 2.4e-07 | -0.15 | 0.45 | 0.07 | FALSE |
126 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SNX17 | 0.08 | 0.01 | blup | 25 | 0.02 | 6.6e-05 | -3.84 | -9.4 | 7.2e-21 | -0.55 | 0.00 | 0.92 | FALSE |
127 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | C2orf28 | 0.24 | 0.00 | lasso | 8 | 0.00 | 2.1e-01 | -4.45 | -6.8 | 1.2e-11 | -0.29 | 0.01 | 0.55 | FALSE |
128 | The Cancer Genome Atlas | Colon Adenocarcinoma | C2orf28 | 0.07 | 0.09 | lasso | 1 | 0.08 | 1.6e-05 | -7.42 | -7.4 | 1.1e-13 | -0.36 | 0.02 | 0.97 | FALSE |
129 | The Cancer Genome Atlas | Colon Adenocarcinoma | NRBP1 | 0.03 | 0.04 | lasso | 1 | 0.03 | 5.2e-03 | -10.24 | 10.2 | 1.3e-24 | 0.59 | 0.02 | 0.64 | FALSE |
130 | The Cancer Genome Atlas | Esophageal Carcinoma | C2orf28 | 0.30 | 0.04 | enet | 26 | 0.11 | 3.0e-04 | -7.92 | -7.1 | 1.7e-12 | -0.31 | 0.01 | 0.82 | FALSE |
131 | The Cancer Genome Atlas | Glioblastoma Multiforme | C2orf28 | 0.14 | 0.02 | lasso | 4 | 0.05 | 1.2e-02 | -5.42 | -6.2 | 6.9e-10 | -0.35 | 0.02 | 0.64 | FALSE |
132 | The Cancer Genome Atlas | Glioblastoma Multiforme | NRBP1 | 0.15 | 0.10 | lasso | 2 | 0.10 | 5.8e-04 | -11.60 | 11.6 | 4.4e-31 | 0.67 | 0.00 | 0.80 | FALSE |
133 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | C2orf28 | 0.02 | 0.01 | blup | 47 | 0.01 | 8.5e-03 | -5.41 | -6.4 | 1.8e-10 | -0.32 | 0.02 | 0.76 | FALSE |
134 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | IFT172 | 0.02 | 0.01 | blup | 43 | 0.02 | 2.7e-03 | -9.74 | 10.1 | 4.8e-24 | 0.60 | 0.10 | 0.10 | FALSE |
135 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | KHK | 0.07 | 0.05 | enet | 8 | 0.06 | 2.0e-07 | 4.76 | 5.3 | 1.2e-07 | 0.10 | 0.02 | 0.97 | FALSE |
136 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | SLC4A1AP | 0.02 | 0.03 | lasso | 2 | 0.03 | 3.7e-04 | 5.71 | -8.7 | 5.0e-18 | -0.47 | 0.01 | 0.83 | FALSE |
137 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CGREF1 | 0.05 | 0.03 | blup | 37 | 0.03 | 4.3e-04 | 4.84 | 5.7 | 9.5e-09 | 0.02 | 0.04 | 0.92 | FALSE |
138 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | KRTCAP3 | 0.02 | 0.01 | blup | 28 | 0.01 | 2.9e-02 | -10.01 | -9.7 | 4.5e-22 | -0.57 | 0.03 | 0.63 | FALSE |
139 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MAPRE3 | 0.02 | 0.02 | enet | 4 | 0.02 | 1.5e-03 | 5.42 | 5.3 | 1.0e-07 | 0.00 | 0.01 | 0.96 | FALSE |
140 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | NRBP1 | 0.06 | 0.07 | lasso | 2 | 0.07 | 1.1e-08 | -9.96 | 10.0 | 2.4e-23 | 0.60 | 0.25 | 0.75 | FALSE |
141 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SNX17 | 0.02 | 0.01 | blup | 26 | 0.01 | 2.1e-02 | -10.12 | -10.6 | 2.3e-26 | -0.62 | 0.03 | 0.81 | FALSE |
142 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SUPT7L | 0.05 | 0.02 | blup | 28 | 0.04 | 5.2e-05 | -4.77 | -7.2 | 5.7e-13 | -0.40 | 0.19 | 0.14 | FALSE |
143 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | C2orf28 | 0.05 | 0.00 | lasso | 1 | 0.01 | 4.8e-02 | -7.79 | -7.8 | 6.7e-15 | -0.38 | 0.01 | 0.69 | FALSE |
144 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | CCDC121 | 0.09 | 0.03 | enet | 8 | 0.02 | 1.9e-02 | 5.72 | 7.3 | 3.6e-13 | 0.36 | 0.03 | 0.60 | FALSE |
145 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | FNDC4 | 0.13 | 0.06 | lasso | 2 | 0.05 | 1.1e-03 | 16.44 | -16.2 | 5.2e-59 | -0.99 | 0.00 | 0.96 | TRUE |
146 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | SLC5A6 | 0.07 | 0.05 | lasso | 3 | 0.03 | 5.6e-03 | -5.41 | 5.4 | 5.3e-08 | 0.29 | 0.09 | 0.62 | FALSE |
147 | The Cancer Genome Atlas | Brain Lower Grade Glioma | GPN1 | 0.03 | 0.04 | enet | 2 | 0.04 | 1.1e-05 | 5.71 | 5.7 | 1.1e-08 | 0.33 | 0.44 | 0.16 | TRUE |
148 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PPM1G | 0.03 | 0.03 | blup | 32 | 0.02 | 9.3e-04 | -10.12 | 9.4 | 3.8e-21 | 0.56 | 0.30 | 0.22 | FALSE |
149 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | C2orf28 | 0.07 | 0.04 | blup | 47 | 0.04 | 4.1e-03 | -7.42 | -7.7 | 1.9e-14 | -0.36 | 0.01 | 0.86 | FALSE |
150 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | CAD | 0.07 | 0.05 | blup | 54 | 0.03 | 1.1e-02 | -7.92 | -8.1 | 4.6e-16 | -0.38 | 0.05 | 0.41 | FALSE |
151 | The Cancer Genome Atlas | Lung Adenocarcinoma | C2orf28 | 0.03 | 0.02 | enet | 7 | 0.02 | 5.8e-04 | -5.41 | -5.8 | 8.6e-09 | -0.27 | 0.02 | 0.63 | FALSE |
152 | The Cancer Genome Atlas | Lung Adenocarcinoma | NRBP1 | 0.03 | 0.05 | blup | 30 | 0.05 | 3.7e-06 | -9.96 | 9.9 | 5.9e-23 | 0.59 | 0.18 | 0.81 | FALSE |
153 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | C2orf28 | 0.02 | 0.01 | blup | 39 | 0.02 | 6.0e-03 | -7.44 | -7.1 | 1.5e-12 | -0.32 | 0.01 | 0.56 | FALSE |
154 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | IFT172 | 0.02 | 0.01 | blup | 44 | 0.01 | 1.4e-02 | -9.38 | 7.4 | 1.8e-13 | 0.43 | 0.06 | 0.05 | FALSE |
155 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | UCN | 0.11 | 0.01 | enet | 12 | 0.02 | 9.1e-03 | -1.38 | 5.8 | 8.6e-09 | 0.23 | 0.02 | 0.04 | FALSE |
156 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | C2orf28 | 0.07 | 0.03 | lasso | 3 | 0.06 | 2.8e-03 | -5.46 | -5.6 | 2.1e-08 | -0.29 | 0.02 | 0.48 | FALSE |
157 | The Cancer Genome Atlas | Prostate Adenocarcinoma | C2orf28 | 0.16 | 0.11 | lasso | 7 | 0.15 | 2.5e-15 | -7.43 | -5.9 | 3.7e-09 | -0.27 | 0.05 | 0.95 | FALSE |
158 | The Cancer Genome Atlas | Prostate Adenocarcinoma | CENPA | 0.04 | 0.00 | enet | 4 | 0.00 | 1.0e-01 | -5.26 | -5.5 | 3.9e-08 | -0.09 | 0.00 | 0.42 | FALSE |
159 | The Cancer Genome Atlas | Prostate Adenocarcinoma | KHK | 0.13 | 0.21 | blup | 37 | 0.23 | 1.4e-23 | 4.83 | 5.8 | 8.6e-09 | 0.05 | 0.04 | 0.96 | FALSE |
160 | The Cancer Genome Atlas | Prostate Adenocarcinoma | NRBP1 | 0.03 | 0.03 | blup | 30 | 0.03 | 2.2e-04 | -9.38 | 10.8 | 2.7e-27 | 0.64 | 0.03 | 0.96 | FALSE |
161 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PPM1G | 0.03 | 0.02 | blup | 32 | 0.02 | 2.4e-03 | -10.56 | 10.5 | 1.0e-25 | 0.61 | 0.02 | 0.89 | FALSE |
162 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | SLC4A1AP | 0.17 | 0.05 | blup | 26 | 0.08 | 4.4e-03 | 10.77 | -8.4 | 3.2e-17 | -0.47 | 0.01 | 0.72 | FALSE |
163 | The Cancer Genome Atlas | Stomach Adenocarcinoma | C2orf28 | 0.06 | 0.05 | lasso | 2 | 0.05 | 8.9e-05 | -7.79 | -7.2 | 5.2e-13 | -0.36 | 0.01 | 0.98 | FALSE |
164 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | C2orf28 | 0.10 | 0.00 | blup | 47 | 0.02 | 4.8e-02 | -7.49 | -7.1 | 1.2e-12 | -0.32 | 0.01 | 0.46 | FALSE |
165 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | CAD | 0.13 | 0.08 | lasso | 2 | 0.07 | 1.8e-03 | -4.45 | -5.5 | 3.8e-08 | -0.22 | 0.02 | 0.07 | TRUE |
166 | The Cancer Genome Atlas | Thyroid Carcinoma | C2orf28 | 0.10 | 0.08 | enet | 17 | 0.07 | 1.9e-07 | -7.42 | -6.9 | 5.8e-12 | -0.34 | 0.04 | 0.96 | FALSE |
167 | The Cancer Genome Atlas | Thyroid Carcinoma | FNDC4 | 0.24 | 0.09 | enet | 9 | 0.17 | 1.9e-16 | -5.24 | -10.6 | 2.1e-26 | -0.70 | 0.41 | 0.59 | FALSE |
168 | The Cancer Genome Atlas | Thyroid Carcinoma | GCKR | 0.18 | 0.08 | enet | 5 | 0.13 | 1.7e-12 | -4.82 | -9.6 | 8.0e-22 | -0.64 | 0.91 | 0.09 | TRUE |
169 | The Cancer Genome Atlas | Thyroid Carcinoma | IFT172 | 0.08 | 0.01 | blup | 43 | 0.02 | 6.1e-03 | -6.51 | -7.8 | 5.6e-15 | -0.54 | 0.02 | 0.27 | FALSE |
170 | The Cancer Genome Atlas | Thyroid Carcinoma | KRTCAP3 | 0.04 | 0.04 | lasso | 1 | 0.03 | 3.4e-04 | -9.38 | -9.4 | 6.5e-21 | -0.55 | 0.10 | 0.20 | FALSE |
171 | The Cancer Genome Atlas | Thyroid Carcinoma | NRBP1 | 0.03 | 0.01 | blup | 30 | 0.02 | 5.3e-03 | -11.60 | 10.7 | 1.7e-26 | 0.62 | 0.01 | 0.96 | FALSE |
172 | The Cancer Genome Atlas | Thyroid Carcinoma | SLC5A6 | 0.10 | 0.08 | enet | 6 | 0.10 | 1.1e-09 | -5.41 | 5.1 | 2.8e-07 | 0.26 | 0.85 | 0.14 | FALSE |
173 | The Cancer Genome Atlas | Thyroid Carcinoma | ZNF513 | 0.09 | 0.02 | blup | 25 | 0.03 | 4.0e-04 | -5.44 | 6.9 | 4.5e-12 | 0.37 | 0.04 | 0.25 | FALSE |